HEADER REPLICATION 21-MAR-21 7M47 TITLE DNA POLYMERASE LAMBDA, TTP:AT MG2+ PRODUCT STATE TERNARY COMPLEX, 60 TITLE 2 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M47 1 REMARK REVDAT 1 06-JUL-22 7M47 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 59624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8390 - 4.5451 0.98 2901 145 0.1980 0.2207 REMARK 3 2 4.5451 - 3.6087 1.00 2789 152 0.1583 0.2094 REMARK 3 3 3.6087 - 3.1528 1.00 2762 135 0.1756 0.1901 REMARK 3 4 3.1528 - 2.8647 1.00 2749 142 0.1854 0.1999 REMARK 3 5 2.8647 - 2.6594 1.00 2743 141 0.1812 0.2123 REMARK 3 6 2.6594 - 2.5027 1.00 2730 146 0.1814 0.1897 REMARK 3 7 2.5027 - 2.3774 1.00 2720 135 0.1751 0.2119 REMARK 3 8 2.3774 - 2.2739 1.00 2707 146 0.1759 0.1916 REMARK 3 9 2.2739 - 2.1864 1.00 2713 138 0.1669 0.1932 REMARK 3 10 2.1864 - 2.1109 1.00 2724 136 0.1723 0.2064 REMARK 3 11 2.1109 - 2.0449 1.00 2681 145 0.1734 0.1993 REMARK 3 12 2.0449 - 1.9865 1.00 2705 139 0.1765 0.2270 REMARK 3 13 1.9865 - 1.9342 1.00 2691 139 0.1674 0.1948 REMARK 3 14 1.9342 - 1.8870 1.00 2697 138 0.1802 0.2358 REMARK 3 15 1.8870 - 1.8441 1.00 2708 139 0.1785 0.2138 REMARK 3 16 1.8441 - 1.8049 1.00 2671 138 0.1824 0.2016 REMARK 3 17 1.8049 - 1.7688 1.00 2715 140 0.1908 0.2188 REMARK 3 18 1.7688 - 1.7354 1.00 2642 137 0.1868 0.2149 REMARK 3 19 1.7354 - 1.7044 0.99 2683 139 0.2155 0.2699 REMARK 3 20 1.7044 - 1.6755 0.97 2592 134 0.2368 0.2427 REMARK 3 21 1.6755 - 1.6485 0.90 2373 124 0.2559 0.3047 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 251 THROUGH 330) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2876 -30.4370 23.8378 REMARK 3 T TENSOR REMARK 3 T11: 0.5432 T22: 0.6189 REMARK 3 T33: 0.5663 T12: 0.1472 REMARK 3 T13: -0.1385 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 0.6723 L22: 0.7983 REMARK 3 L33: 0.5457 L12: -0.1484 REMARK 3 L13: -0.2695 L23: -0.3334 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: -0.6560 S13: -0.0646 REMARK 3 S21: 0.5351 S22: 0.1113 S23: -0.6711 REMARK 3 S31: 0.3506 S32: 0.5482 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 331 THROUGH 534) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9112 -5.5448 9.1984 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.1777 REMARK 3 T33: 0.2119 T12: 0.0256 REMARK 3 T13: -0.0181 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.2888 L22: 1.1975 REMARK 3 L33: 1.3596 L12: 0.1770 REMARK 3 L13: -0.7609 L23: 0.1777 REMARK 3 S TENSOR REMARK 3 S11: 0.1019 S12: -0.1434 S13: 0.2982 REMARK 3 S21: 0.0788 S22: 0.0115 S23: -0.0135 REMARK 3 S31: -0.1699 S32: 0.0471 S33: 0.0302 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 535 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4143 -4.3858 31.0878 REMARK 3 T TENSOR REMARK 3 T11: 0.4183 T22: 0.6075 REMARK 3 T33: 0.2734 T12: -0.0205 REMARK 3 T13: 0.0086 T23: -0.1657 REMARK 3 L TENSOR REMARK 3 L11: 4.3843 L22: 1.5649 REMARK 3 L33: 0.9305 L12: -0.8795 REMARK 3 L13: 0.1541 L23: 0.5179 REMARK 3 S TENSOR REMARK 3 S11: 0.1964 S12: -0.8975 S13: -0.5155 REMARK 3 S21: 0.4292 S22: -0.0982 S23: 0.0648 REMARK 3 S31: -0.1082 S32: 0.6137 S33: 0.0895 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9842 -25.9366 26.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.4913 T22: 0.5800 REMARK 3 T33: 0.3634 T12: -0.0134 REMARK 3 T13: 0.0557 T23: 0.1912 REMARK 3 L TENSOR REMARK 3 L11: 0.2712 L22: 0.1138 REMARK 3 L33: 0.0566 L12: -0.0832 REMARK 3 L13: 0.0259 L23: -0.0709 REMARK 3 S TENSOR REMARK 3 S11: 0.2660 S12: -0.1536 S13: -0.0406 REMARK 3 S21: 0.1332 S22: 0.1568 S23: 0.4850 REMARK 3 S31: 0.0276 S32: -0.2576 S33: 0.0038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1301 -9.2100 12.3543 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.2244 REMARK 3 T33: 0.2738 T12: -0.0105 REMARK 3 T13: 0.0075 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.1511 L22: 0.2518 REMARK 3 L33: 0.0629 L12: 0.1563 REMARK 3 L13: -0.0082 L23: 0.0871 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.0826 S13: 0.1483 REMARK 3 S21: 0.0113 S22: 0.0288 S23: 0.1434 REMARK 3 S31: -0.1549 S32: -0.0322 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2821 -14.0611 9.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.2174 REMARK 3 T33: 0.2184 T12: 0.0150 REMARK 3 T13: -0.0017 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 0.0524 L22: 0.0405 REMARK 3 L33: 0.0527 L12: -0.0303 REMARK 3 L13: -0.0241 L23: 0.0647 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: -0.2674 S13: -0.0987 REMARK 3 S21: 0.0249 S22: -0.0632 S23: -0.0693 REMARK 3 S31: -0.1626 S32: -0.2099 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5102 -28.5086 29.4392 REMARK 3 T TENSOR REMARK 3 T11: 0.5144 T22: 0.4596 REMARK 3 T33: 0.2474 T12: -0.0047 REMARK 3 T13: 0.0572 T23: 0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.2204 L22: 0.7635 REMARK 3 L33: 1.1016 L12: 0.0034 REMARK 3 L13: 0.0090 L23: 0.9164 REMARK 3 S TENSOR REMARK 3 S11: 0.4378 S12: -0.4224 S13: -0.0729 REMARK 3 S21: 0.3290 S22: 0.2349 S23: -0.0125 REMARK 3 S31: 0.3633 S32: 0.1087 S33: 0.0773 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.648 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.02450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.02950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.23100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.02950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.02450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.23100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CD1 CD2 REMARK 470 ILE A 256 CG1 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CE NZ REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 273 CE NZ REMARK 470 ARG A 275 NH1 NH2 REMARK 470 PHE A 289 CE1 CE2 CZ REMARK 470 LYS A 291 CE NZ REMARK 470 VAL A 293 CG1 CG2 REMARK 470 GLN A 297 CB CG CD OE1 NE2 REMARK 470 LYS A 307 CD CE NZ REMARK 470 ARG A 308 CZ NH1 NH2 REMARK 470 ALA A 310 CB REMARK 470 ILE A 313 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 LEU A 317 CD1 CD2 REMARK 470 GLU A 318 OE1 OE2 REMARK 470 LEU A 322 CD1 CD2 REMARK 470 ARG A 323 CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 385 OE1 OE2 REMARK 470 LYS A 401 CD CE NZ REMARK 470 PHE A 406 CE1 CE2 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 SER A 439 OG REMARK 470 ARG A 441 CD NE CZ NH1 NH2 REMARK 470 SER A 445 OG REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 454 CD OE1 OE2 REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 LYS A 521 NZ REMARK 470 THR A 534 OG1 CG2 REMARK 470 ALA A 535 CB REMARK 470 VAL A 536 CG1 CG2 REMARK 470 VAL A 537 CG1 CG2 REMARK 470 THR A 540 CB OG1 CG2 REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS A 557 CD CE NZ REMARK 470 ARG A 568 NH1 NH2 REMARK 470 GLU A 569 CD OE1 OE2 REMARK 470 GLU A 572 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC P 1 O3' DC P 1 C3' -0.038 REMARK 500 DA P 2 O3' DA P 2 C3' -0.040 REMARK 500 DG D 1 P DG D 1 OP3 -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT T 7 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC T 9 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG T 11 OP1 - P - OP2 ANGL. DEV. = 9.2 DEGREES REMARK 500 DG T 11 O5' - P - OP2 ANGL. DEV. = -6.4 DEGREES REMARK 500 DT P 7 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -137.78 -109.18 REMARK 500 ARG A 438 -36.50 -136.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 86.0 REMARK 620 3 ILE A 305 O 92.1 85.8 REMARK 620 4 DC D 3 OP1 173.9 88.3 89.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 ILE A 341 O 97.7 REMARK 620 3 ALA A 344 O 86.9 85.8 REMARK 620 4 HOH A 822 O 90.6 101.4 172.6 REMARK 620 5 DA P 5 OP1 163.3 98.9 92.5 87.9 REMARK 620 6 HOH P 110 O 74.0 167.1 83.9 88.7 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD1 73.6 REMARK 620 3 ASP A 490 OD2 156.4 102.1 REMARK 620 4 HOH A 847 O 73.1 87.6 83.6 REMARK 620 5 HOH A 851 O 80.3 153.9 102.2 85.9 REMARK 620 6 DC P 6 O3' 117.5 106.4 86.1 164.2 84.5 REMARK 620 7 DT P 7 OP1 63.4 81.1 139.8 136.5 86.4 55.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 94.0 REMARK 620 3 PPV A 607 O21 165.9 89.7 REMARK 620 4 PPV A 607 O22 89.1 175.5 86.5 REMARK 620 5 HOH A 701 O 87.1 94.5 79.1 82.3 REMARK 620 6 DT P 7 OP1 93.6 96.5 99.5 86.6 168.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 859 O REMARK 620 2 HOH A 868 O 86.8 REMARK 620 3 HOH A 894 O 78.8 116.9 REMARK 620 N 1 2 DBREF 7M47 A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M47 T 1 11 PDB 7M47 7M47 1 11 DBREF 7M47 P 1 7 PDB 7M47 7M47 1 7 DBREF 7M47 D 1 4 PDB 7M47 7M47 1 4 SEQADV 7M47 LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M47 GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M47 A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M47 A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M47 A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M47 A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M47 A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M47 THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQADV 7M47 ALA A 543 UNP Q9UGP5 CYS 543 ENGINEERED MUTATION SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC DT SEQRES 1 D 4 DG DC DC DG HET SRT A 601 10 HET NA A 602 1 HET NA A 603 1 HET NA A 604 1 HET NA A 605 1 HET MG A 606 1 HET PPV A 607 9 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HETNAM SRT S,R MESO-TARTARIC ACID HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM PPV PYROPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 SRT C4 H6 O6 FORMUL 6 NA 4(NA 1+) FORMUL 10 MG MG 2+ FORMUL 11 PPV H4 O7 P2 FORMUL 12 EDO 4(C2 H6 O2) FORMUL 16 HOH *288(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 SER A 288 1 17 HELIX 3 AA3 SER A 295 ILE A 302 1 8 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLN A 453 1 11 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N TYR A 473 O ILE A 491 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N LEU A 461 O LEU A 474 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 LEU A 551 -1 O LEU A 551 N LEU A 532 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O GLY A 546 N VAL A 537 LINK O CYS A 300 NA NA A 604 1555 1555 2.63 LINK O ILE A 302 NA NA A 604 1555 1555 2.57 LINK O ILE A 305 NA NA A 604 1555 1555 2.72 LINK O SER A 339 NA NA A 603 1555 1555 2.36 LINK O ILE A 341 NA NA A 603 1555 1555 2.47 LINK O ALA A 344 NA NA A 603 1555 1555 2.34 LINK OD1 ASP A 427 NA NA A 602 1555 1555 3.08 LINK OD1 ASP A 427 MG MG A 606 1555 1555 2.05 LINK OD1 ASP A 429 NA NA A 602 1555 1555 2.23 LINK OD2 ASP A 429 MG MG A 606 1555 1555 2.03 LINK OD2 ASP A 490 NA NA A 602 1555 1555 2.44 LINK NA NA A 602 O HOH A 847 1555 1555 2.57 LINK NA NA A 602 O HOH A 851 1555 1555 2.42 LINK NA NA A 602 O3' DC P 6 1555 1555 2.79 LINK NA NA A 602 OP1 DT P 7 1555 1555 2.42 LINK NA NA A 603 O HOH A 822 1555 1555 2.34 LINK NA NA A 603 OP1 DA P 5 1555 1555 2.38 LINK NA NA A 603 O HOH P 110 1555 1555 2.72 LINK NA NA A 604 OP1 DC D 3 1555 1555 3.01 LINK NA NA A 605 O HOH A 859 1555 1555 3.14 LINK NA NA A 605 O HOH A 868 1555 1555 2.62 LINK NA NA A 605 O HOH A 894 1555 1555 2.28 LINK MG MG A 606 O21 PPV A 607 1555 1555 1.99 LINK MG MG A 606 O22 PPV A 607 1555 1555 2.05 LINK MG MG A 606 O HOH A 701 1555 1555 2.04 LINK MG MG A 606 OP1 DT P 7 1555 1555 1.98 CISPEP 1 GLY A 508 SER A 509 0 -1.12 CRYST1 56.049 62.462 140.059 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007140 0.00000