HEADER REPLICATION 21-MAR-21 7M48 TITLE DNA POLYMERASE LAMBDA, TTP:AT MG2+ PRODUCT STATE TERNARY COMPLEX, 960 TITLE 2 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M48 1 REMARK REVDAT 1 06-JUL-22 7M48 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8960 - 4.5352 0.99 2947 147 0.1895 0.2207 REMARK 3 2 4.5352 - 3.6008 1.00 2815 155 0.1547 0.2053 REMARK 3 3 3.6008 - 3.1459 1.00 2784 136 0.1770 0.2090 REMARK 3 4 3.1459 - 2.8584 1.00 2786 144 0.1867 0.2352 REMARK 3 5 2.8584 - 2.6536 1.00 2773 138 0.1882 0.2063 REMARK 3 6 2.6536 - 2.4972 1.00 2743 148 0.1884 0.2076 REMARK 3 7 2.4972 - 2.3722 1.00 2777 142 0.1854 0.2207 REMARK 3 8 2.3722 - 2.2689 1.00 2735 142 0.1827 0.2082 REMARK 3 9 2.2689 - 2.1816 1.00 2737 141 0.1873 0.2146 REMARK 3 10 2.1816 - 2.1063 1.00 2713 135 0.2058 0.2541 REMARK 3 11 2.1063 - 2.0405 1.00 2753 143 0.2112 0.2337 REMARK 3 12 2.0405 - 1.9822 1.00 2748 140 0.2266 0.2882 REMARK 3 13 1.9822 - 1.9300 0.99 2702 148 0.2483 0.2980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 251 THROUGH 538) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0971 -12.1243 13.4326 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.2849 REMARK 3 T33: 0.2484 T12: 0.0224 REMARK 3 T13: -0.0460 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 1.8061 L22: 1.6287 REMARK 3 L33: 1.4490 L12: 0.1853 REMARK 3 L13: -0.6169 L23: 0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.2878 S13: 0.0406 REMARK 3 S21: 0.1760 S22: 0.0398 S23: -0.1468 REMARK 3 S31: -0.0224 S32: 0.1370 S33: 0.0078 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 539 THROUGH 548) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9016 -13.1553 27.2047 REMARK 3 T TENSOR REMARK 3 T11: 1.2122 T22: 0.7015 REMARK 3 T33: 0.7830 T12: 0.2667 REMARK 3 T13: -0.0319 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0204 REMARK 3 L33: 0.0016 L12: -0.0003 REMARK 3 L13: -0.0001 L23: 0.0057 REMARK 3 S TENSOR REMARK 3 S11: -0.1432 S12: -0.0415 S13: -0.2036 REMARK 3 S21: -0.0483 S22: -0.1528 S23: -0.0317 REMARK 3 S31: 0.1207 S32: -0.0027 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 549 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4980 -1.9203 32.0169 REMARK 3 T TENSOR REMARK 3 T11: 0.4416 T22: 0.6303 REMARK 3 T33: 0.3151 T12: -0.0102 REMARK 3 T13: -0.0400 T23: -0.2121 REMARK 3 L TENSOR REMARK 3 L11: 2.6188 L22: 1.2593 REMARK 3 L33: 0.7206 L12: -0.3753 REMARK 3 L13: -1.2595 L23: 0.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -0.6565 S13: 0.0990 REMARK 3 S21: 0.4680 S22: 0.0950 S23: -0.1917 REMARK 3 S31: -0.3964 S32: 0.6981 S33: -0.1191 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8741 -26.1264 26.6940 REMARK 3 T TENSOR REMARK 3 T11: 0.5097 T22: 0.5174 REMARK 3 T33: 0.3895 T12: -0.0312 REMARK 3 T13: 0.0454 T23: 0.1870 REMARK 3 L TENSOR REMARK 3 L11: 0.2840 L22: 0.8318 REMARK 3 L33: 0.0643 L12: -0.4739 REMARK 3 L13: -0.1311 L23: 0.2306 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.1152 S13: -0.2515 REMARK 3 S21: -0.1077 S22: 0.0886 S23: 0.6207 REMARK 3 S31: 0.1422 S32: -0.1870 S33: -0.0471 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0987 -9.2915 12.3314 REMARK 3 T TENSOR REMARK 3 T11: 0.2867 T22: 0.2289 REMARK 3 T33: 0.2680 T12: -0.0031 REMARK 3 T13: 0.0007 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.1305 L22: 0.2482 REMARK 3 L33: 0.0812 L12: 0.0923 REMARK 3 L13: -0.0060 L23: 0.1176 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: -0.0509 S13: 0.0210 REMARK 3 S21: 0.0296 S22: 0.0095 S23: 0.2034 REMARK 3 S31: 0.0361 S32: 0.0679 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2162 -14.1616 9.7548 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.2485 REMARK 3 T33: 0.2187 T12: 0.0136 REMARK 3 T13: 0.0015 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 0.0621 L22: 0.0650 REMARK 3 L33: 0.0653 L12: -0.0602 REMARK 3 L13: 0.0017 L23: -0.0106 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: -0.2194 S13: -0.1029 REMARK 3 S21: 0.0668 S22: -0.0503 S23: -0.0402 REMARK 3 S31: -0.0641 S32: -0.1702 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3871 -28.6879 29.4387 REMARK 3 T TENSOR REMARK 3 T11: 0.5130 T22: 0.5449 REMARK 3 T33: 0.3021 T12: 0.0044 REMARK 3 T13: 0.0383 T23: 0.0689 REMARK 3 L TENSOR REMARK 3 L11: 0.1988 L22: 1.5455 REMARK 3 L33: 0.5667 L12: 0.1435 REMARK 3 L13: 0.0734 L23: 0.9351 REMARK 3 S TENSOR REMARK 3 S11: 0.4253 S12: -0.4900 S13: -0.1069 REMARK 3 S21: 0.3739 S22: 0.3258 S23: -0.1716 REMARK 3 S31: 0.3190 S32: 0.3700 S33: 0.2050 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37937 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.94500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.08400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.95600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.32650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.95600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.08400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.32650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 GLU A 258 CD OE1 OE2 REMARK 470 LYS A 259 CD CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LEU A 263 CD1 CD2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 273 CD CE NZ REMARK 470 PHE A 289 CE1 CE2 CZ REMARK 470 LYS A 291 CE NZ REMARK 470 VAL A 293 CG1 CG2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 ILE A 302 CD1 REMARK 470 LYS A 307 CD CE NZ REMARK 470 ARG A 308 CZ NH1 NH2 REMARK 470 ILE A 314 CD1 REMARK 470 SER A 319 OG REMARK 470 LEU A 322 CD1 CD2 REMARK 470 ARG A 323 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 385 OE1 OE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 PHE A 406 CE1 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 441 CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CD1 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 CG OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 LYS A 463 NZ REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 GLU A 529 OE1 OE2 REMARK 470 THR A 534 OG1 CG2 REMARK 470 VAL A 537 CG1 CG2 REMARK 470 ARG A 538 CG CD NE CZ NH1 NH2 REMARK 470 THR A 540 OG1 CG2 REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS A 557 CD CE NZ REMARK 470 GLU A 569 OE1 OE2 REMARK 470 GLU A 572 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -137.53 -110.54 REMARK 500 ARG A 438 -44.22 -141.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EDO A 606 REMARK 610 EDO A 607 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 88.8 REMARK 620 3 ILE A 305 O 80.3 85.3 REMARK 620 4 DC D 3 OP1 169.9 92.4 89.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 SER A 339 O 9.6 REMARK 620 3 ILE A 341 O 99.9 90.9 REMARK 620 4 ALA A 344 O 91.0 86.9 85.8 REMARK 620 5 HOH A 723 O 88.8 92.9 94.3 179.7 REMARK 620 6 DA P 5 OP1 162.5 171.9 97.3 93.7 86.5 REMARK 620 7 HOH P 105 O 72.6 81.1 169.4 86.8 93.0 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD1 76.6 REMARK 620 3 ASP A 490 OD2 158.5 101.9 REMARK 620 4 HOH A 773 O 76.7 153.3 103.3 REMARK 620 5 HOH A 816 O 75.3 86.6 83.1 87.6 REMARK 620 6 DC P 6 O3' 113.3 106.5 87.9 83.4 165.5 REMARK 620 7 DT P 7 OP1 58.8 84.3 142.7 81.2 134.2 55.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 102.0 REMARK 620 3 OXL A 611 O1 87.5 166.9 REMARK 620 4 OXL A 611 O2 164.3 92.4 77.4 REMARK 620 5 HOH A 798 O 87.9 87.3 83.9 86.4 REMARK 620 6 DT P 7 OP1 92.5 97.6 91.1 92.0 174.9 REMARK 620 N 1 2 3 4 5 DBREF 7M48 A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M48 T 1 11 PDB 7M48 7M48 1 11 DBREF 7M48 P 1 7 PDB 7M48 7M48 1 7 DBREF 7M48 D 1 4 PDB 7M48 7M48 1 4 SEQADV 7M48 LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M48 GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M48 A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M48 A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M48 A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M48 A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M48 A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M48 THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQADV 7M48 ALA A 543 UNP Q9UGP5 CYS 543 ENGINEERED MUTATION SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC DT SEQRES 1 D 4 DG DC DC DG HET NA A 601 1 HET NA A 602 1 HET NA A 603 1 HET NA A 604 1 HET MG A 605 1 HET EDO A 606 2 HET EDO A 607 3 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET OXL A 611 6 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM OXL OXALATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 NA 4(NA 1+) FORMUL 9 MG MG 2+ FORMUL 10 EDO 5(C2 H6 O2) FORMUL 15 OXL C2 O4 2- FORMUL 16 HOH *251(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 PHE A 289 1 18 HELIX 3 AA3 SER A 295 ILE A 302 1 8 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLU A 454 1 12 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N TYR A 473 O ILE A 491 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N LEU A 461 O LEU A 474 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 VAL A 550 -1 O ARG A 549 N THR A 534 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O GLY A 546 N VAL A 537 LINK O CYS A 300 NA NA A 603 1555 1555 2.96 LINK O ILE A 302 NA NA A 603 1555 1555 2.55 LINK O ILE A 305 NA NA A 603 1555 1555 2.92 LINK O ASER A 339 NA NA A 602 1555 1555 2.44 LINK O BSER A 339 NA NA A 602 1555 1555 2.23 LINK O ILE A 341 NA NA A 602 1555 1555 2.43 LINK O ALA A 344 NA NA A 602 1555 1555 2.29 LINK OD1 ASP A 427 NA NA A 601 1555 1555 3.17 LINK OD1 ASP A 427 MG MG A 605 1555 1555 1.97 LINK OD1 ASP A 429 NA NA A 601 1555 1555 2.23 LINK OD2 ASP A 429 MG MG A 605 1555 1555 1.91 LINK OD2 ASP A 490 NA NA A 601 1555 1555 2.34 LINK NA NA A 601 O HOH A 773 1555 1555 2.55 LINK NA NA A 601 O HOH A 816 1555 1555 2.43 LINK NA NA A 601 O3' DC P 6 1555 1555 2.78 LINK NA NA A 601 OP1 DT P 7 1555 1555 2.51 LINK NA NA A 602 O HOH A 723 1555 1555 2.50 LINK NA NA A 602 OP1 DA P 5 1555 1555 2.40 LINK NA NA A 602 O HOH P 105 1555 1555 2.65 LINK NA NA A 603 OP1 DC D 3 1555 1555 2.86 LINK NA NA A 604 O HOH A 845 1555 1555 3.11 LINK MG MG A 605 O1 OXL A 611 1555 1555 2.38 LINK MG MG A 605 O2 OXL A 611 1555 1555 2.08 LINK MG MG A 605 O HOH A 798 1555 1555 2.18 LINK MG MG A 605 OP1 DT P 7 1555 1555 1.97 CISPEP 1 GLY A 508 SER A 509 0 2.22 CRYST1 56.168 62.653 139.912 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017804 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007147 0.00000