HEADER REPLICATION 21-MAR-21 7M4A TITLE DNA POLYMERASE LAMBDA, TTP:AT MN2+ PRODUCT STATE TERNARY COMPLEX, 20 TITLE 2 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M4A 1 REMARK REVDAT 1 06-JUL-22 7M4A 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 41765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1740 - 4.6012 0.99 2849 142 0.1918 0.2158 REMARK 3 2 4.6012 - 3.6539 1.00 2706 144 0.1563 0.1971 REMARK 3 3 3.6539 - 3.1926 1.00 2705 134 0.1786 0.2113 REMARK 3 4 3.1926 - 2.9009 1.00 2651 141 0.1938 0.2255 REMARK 3 5 2.9009 - 2.6931 1.00 2671 133 0.2055 0.2266 REMARK 3 6 2.6931 - 2.5344 1.00 2642 141 0.1952 0.2182 REMARK 3 7 2.5344 - 2.4075 1.00 2618 133 0.1880 0.2238 REMARK 3 8 2.4075 - 2.3028 1.00 2647 143 0.1933 0.2393 REMARK 3 9 2.3028 - 2.2141 1.00 2622 133 0.1916 0.2235 REMARK 3 10 2.2141 - 2.1378 1.00 2629 131 0.2036 0.2268 REMARK 3 11 2.1378 - 2.0709 1.00 2606 144 0.2078 0.2763 REMARK 3 12 2.0709 - 2.0117 1.00 2643 130 0.2160 0.2585 REMARK 3 13 2.0117 - 1.9588 1.00 2617 125 0.2257 0.2646 REMARK 3 14 1.9588 - 1.9110 1.00 2608 143 0.2482 0.2738 REMARK 3 15 1.9110 - 1.8680 0.97 2506 128 0.2857 0.3139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3487 -26.2143 22.0950 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.7208 REMARK 3 T33: 0.6237 T12: 0.0743 REMARK 3 T13: -0.0929 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.6402 L22: 1.1877 REMARK 3 L33: 0.7718 L12: -0.5930 REMARK 3 L13: -0.4869 L23: -0.0634 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.6307 S13: 0.1476 REMARK 3 S21: 0.2908 S22: 0.1372 S23: -0.7075 REMARK 3 S31: 0.3439 S32: 0.6379 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1711 -12.3718 9.1649 REMARK 3 T TENSOR REMARK 3 T11: 0.3090 T22: 0.3269 REMARK 3 T33: 0.3200 T12: 0.0390 REMARK 3 T13: -0.0312 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 2.3167 L22: 1.3830 REMARK 3 L33: 1.6205 L12: 0.2126 REMARK 3 L13: -0.7827 L23: 0.4048 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -0.1262 S13: 0.1132 REMARK 3 S21: 0.0598 S22: 0.0880 S23: -0.1352 REMARK 3 S31: -0.0432 S32: 0.1080 S33: 0.0033 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 463 THROUGH 485 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5749 -0.1519 2.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.4124 T22: 0.3539 REMARK 3 T33: 0.4711 T12: 0.0278 REMARK 3 T13: 0.0067 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.4273 L22: 1.0295 REMARK 3 L33: 0.9997 L12: 0.4553 REMARK 3 L13: 0.3143 L23: -0.3213 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0843 S13: 0.3254 REMARK 3 S21: -0.1389 S22: 0.1289 S23: -0.2068 REMARK 3 S31: -0.2271 S32: 0.0506 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 486 THROUGH 575 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3520 -4.3287 26.3063 REMARK 3 T TENSOR REMARK 3 T11: 0.4610 T22: 0.5317 REMARK 3 T33: 0.4081 T12: -0.0100 REMARK 3 T13: -0.0047 T23: -0.1393 REMARK 3 L TENSOR REMARK 3 L11: 2.0078 L22: 1.6667 REMARK 3 L33: 3.2600 L12: -0.0576 REMARK 3 L13: -1.1930 L23: -0.4008 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: -0.7962 S13: 0.0926 REMARK 3 S21: 0.4227 S22: 0.0604 S23: 0.1361 REMARK 3 S31: -0.0028 S32: 0.3324 S33: 0.0056 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0185 -26.1169 26.8166 REMARK 3 T TENSOR REMARK 3 T11: 0.5253 T22: 0.6605 REMARK 3 T33: 0.4269 T12: -0.0216 REMARK 3 T13: 0.0229 T23: 0.2345 REMARK 3 L TENSOR REMARK 3 L11: 0.1310 L22: 0.1524 REMARK 3 L33: 0.0464 L12: 0.1340 REMARK 3 L13: 0.0664 L23: 0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: -0.3032 S13: 0.3603 REMARK 3 S21: -0.0759 S22: 0.2430 S23: 0.8623 REMARK 3 S31: 0.1050 S32: -0.4188 S33: -0.0059 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7304 -9.3004 9.9101 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.3049 REMARK 3 T33: 0.3764 T12: 0.0144 REMARK 3 T13: -0.0271 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 0.2550 L22: 0.5687 REMARK 3 L33: 0.3230 L12: 0.1006 REMARK 3 L13: -0.0803 L23: 0.3679 REMARK 3 S TENSOR REMARK 3 S11: 0.2038 S12: -0.1577 S13: -0.0210 REMARK 3 S21: 0.1073 S22: -0.0166 S23: 0.3632 REMARK 3 S31: -0.3232 S32: 0.1268 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3660 -14.1185 9.7604 REMARK 3 T TENSOR REMARK 3 T11: 0.2974 T22: 0.3587 REMARK 3 T33: 0.2802 T12: 0.0212 REMARK 3 T13: -0.0106 T23: -0.0608 REMARK 3 L TENSOR REMARK 3 L11: 0.1206 L22: 0.3449 REMARK 3 L33: 0.1140 L12: -0.1449 REMARK 3 L13: 0.0064 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: 0.0922 S12: -0.4081 S13: -0.1108 REMARK 3 S21: -0.0108 S22: -0.1474 S23: -0.1057 REMARK 3 S31: -0.0859 S32: -0.3222 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5064 -28.6178 29.5154 REMARK 3 T TENSOR REMARK 3 T11: 0.6632 T22: 0.5816 REMARK 3 T33: 0.3997 T12: 0.0080 REMARK 3 T13: 0.0488 T23: 0.1331 REMARK 3 L TENSOR REMARK 3 L11: 0.2154 L22: 1.6594 REMARK 3 L33: 1.4658 L12: 0.0178 REMARK 3 L13: -0.0945 L23: 1.5293 REMARK 3 S TENSOR REMARK 3 S11: 0.2171 S12: -0.9321 S13: -0.1313 REMARK 3 S21: 0.6572 S22: 0.5421 S23: 0.1366 REMARK 3 S31: 0.6711 S32: 0.4501 S33: 0.2236 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41845 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.868 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.02500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.20250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.36350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.20250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.02500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.36350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LEU A 263 CD1 CD2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 273 CD CE NZ REMARK 470 LEU A 286 CD1 CD2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 PHE A 289 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 VAL A 293 CB CG1 CG2 REMARK 470 GLN A 297 CB CG CD OE1 NE2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 SER A 301 OG REMARK 470 ILE A 302 CG1 CG2 CD1 REMARK 470 ILE A 305 CD1 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ARG A 308 CZ NH1 NH2 REMARK 470 ILE A 313 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 LEU A 317 CD1 CD2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 LEU A 322 CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 ASP A 326 OD1 OD2 REMARK 470 GLU A 390 OE1 OE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 PHE A 406 CE1 CE2 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 SER A 439 OG REMARK 470 ARG A 441 CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CD1 REMARK 470 SER A 445 OG REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 CG OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 454 CD OE1 OE2 REMARK 470 LYS A 463 NZ REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 LYS A 472 NZ REMARK 470 ILE A 492 CD1 REMARK 470 ALA A 535 CB REMARK 470 THR A 540 CB OG1 CG2 REMARK 470 HIS A 541 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS A 557 CG CD CE NZ REMARK 470 GLU A 569 CG CD OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 309 N CA C O CB CG SD REMARK 480 MET A 309 CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG T 2 C2' DG T 2 C1' 0.061 REMARK 500 DG D 1 P DG D 1 OP3 -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC T 9 O5' - P - OP1 ANGL. DEV. = -6.5 DEGREES REMARK 500 DT P 7 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -136.42 -109.13 REMARK 500 ARG A 438 -42.71 -136.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EDO A 608 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 101.8 REMARK 620 3 ILE A 305 O 93.3 88.0 REMARK 620 4 HOH A 782 O 84.5 163.6 76.5 REMARK 620 5 DC D 3 OP1 164.0 94.2 87.2 80.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 ILE A 341 O 99.1 REMARK 620 3 ALA A 344 O 88.8 86.0 REMARK 620 4 HOH A 774 O 92.0 99.1 174.6 REMARK 620 5 DA P 5 OP1 162.3 98.5 93.4 84.2 REMARK 620 6 HOH P 203 O 74.5 169.9 86.0 89.1 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 382 OD2 REMARK 620 2 HIS A 486 ND1 100.5 REMARK 620 3 HOH A 754 O 76.9 95.2 REMARK 620 4 HOH A 778 O 116.1 90.6 164.6 REMARK 620 5 HOH A 796 O 143.4 96.3 69.3 95.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD2 REMARK 620 2 ASP A 429 OD1 98.1 REMARK 620 3 ASP A 490 OD2 103.8 99.4 REMARK 620 4 HOH A 704 O 69.9 162.7 95.7 REMARK 620 5 DT P 7 OP1 110.5 91.6 142.0 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 96.2 REMARK 620 3 PPV A 601 O21 168.1 92.2 REMARK 620 4 PPV A 601 O21 152.0 94.5 17.5 REMARK 620 5 PPV A 601 O22 80.9 165.4 88.8 82.2 REMARK 620 6 PPV A 601 O22 92.1 171.4 79.3 77.0 16.4 REMARK 620 7 PPV A 601 O32 88.7 100.9 81.4 63.9 64.8 76.9 REMARK 620 8 HOH A 741 O 78.7 86.7 93.4 76.2 78.6 92.6 18.2 REMARK 620 9 DT P 7 OP1 93.8 92.9 94.2 111.3 101.6 88.9 165.7 172.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN P 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPV A 601 O31 REMARK 620 2 DT P 7 OP2 82.0 REMARK 620 N 1 DBREF 7M4A A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M4A T 1 11 PDB 7M4A 7M4A 1 11 DBREF 7M4A P 1 7 PDB 7M4A 7M4A 1 7 DBREF 7M4A D 1 4 PDB 7M4A 7M4A 1 4 SEQADV 7M4A LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M4A GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M4A A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M4A A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M4A A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M4A A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M4A A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M4A THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQADV 7M4A ALA A 543 UNP Q9UGP5 CYS 543 ENGINEERED MUTATION SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC DT SEQRES 1 D 4 DG DC DC DG HET PPV A 601 18 HET MN A 602 1 HET MN A 603 1 HET MN A 604 1 HET NA A 605 1 HET NA A 606 1 HET NA A 607 1 HET EDO A 608 3 HET EDO A 609 4 HET EDO A 610 4 HET MN P 101 1 HETNAM PPV PYROPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 PPV H4 O7 P2 FORMUL 6 MN 4(MN 2+) FORMUL 9 NA 3(NA 1+) FORMUL 12 EDO 3(C2 H6 O2) FORMUL 16 HOH *167(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 PHE A 289 1 18 HELIX 3 AA3 SER A 295 SER A 301 1 7 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLU A 454 1 12 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N LEU A 461 O LEU A 474 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 VAL A 550 -1 O ARG A 549 N THR A 534 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O VAL A 545 N VAL A 537 LINK O CYS A 300 NA NA A 606 1555 1555 2.39 LINK O ILE A 302 NA NA A 606 1555 1555 2.20 LINK O ILE A 305 NA NA A 606 1555 1555 2.74 LINK O SER A 339 NA NA A 605 1555 1555 2.35 LINK O ILE A 341 NA NA A 605 1555 1555 2.44 LINK O ALA A 344 NA NA A 605 1555 1555 2.33 LINK OD2 ASP A 382 MN MN A 604 1555 1555 2.07 LINK OD2 ASP A 427 MN MN A 602 1555 1555 1.81 LINK OD1 ASP A 427 MN MN A 603 1555 1555 2.03 LINK OD1 ASP A 429 MN MN A 602 1555 1555 2.03 LINK OD2 ASP A 429 MN MN A 603 1555 1555 2.09 LINK ND1 HIS A 486 MN MN A 604 1555 1555 2.30 LINK OD2 ASP A 490 MN MN A 602 1555 1555 2.12 LINK O21APPV A 601 MN MN A 603 1555 1555 1.92 LINK O21BPPV A 601 MN MN A 603 1555 1555 2.23 LINK O22APPV A 601 MN MN A 603 1555 1555 2.42 LINK O22BPPV A 601 MN MN A 603 1555 1555 2.38 LINK O32APPV A 601 MN MN A 603 1555 1555 2.29 LINK O31BPPV A 601 MN B MN P 101 1555 1555 2.39 LINK MN MN A 602 O HOH A 704 1555 1555 2.43 LINK MN MN A 602 OP1 DT P 7 1555 1555 2.20 LINK MN MN A 603 O BHOH A 741 1555 1555 2.30 LINK MN MN A 603 OP1 DT P 7 1555 1555 2.17 LINK MN MN A 604 O HOH A 754 1555 1555 2.40 LINK MN MN A 604 O HOH A 778 1555 1555 2.32 LINK MN MN A 604 O HOH A 796 1555 1555 2.52 LINK NA NA A 605 O HOH A 774 1555 1555 2.36 LINK NA NA A 605 OP1 DA P 5 1555 1555 2.46 LINK NA NA A 605 O HOH P 203 1555 1555 2.67 LINK NA NA A 606 O HOH A 782 1555 1555 2.05 LINK NA NA A 606 OP1 DC D 3 1555 1555 3.03 LINK NA NA A 607 O HOH A 791 1555 1555 3.18 LINK OP2 DT P 7 MN B MN P 101 1555 1555 2.19 CISPEP 1 GLY A 508 SER A 509 0 -0.91 CRYST1 56.050 62.727 140.405 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007122 0.00000