HEADER APOPTOSIS 23-MAR-21 7M5B TITLE CRYSTAL STRUCTURE OF HUMAN BAK IN COMPLEX WITH M3W5_BID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2 HOMOLOGOUS ANTAGONIST/KILLER; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: APOPTOSIS REGULATOR BAK,BCL-2-LIKE PROTEIN 7,BCL2-L-7; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BH3-INTERACTING DOMAIN DEATH AGONIST P15; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: P15 BID; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAK1, BAK, BCL2L7, CDN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: T7 PLACI/Y; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-PEPTIDE COMPLEX, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR G.SINGH,A.AGGARWAL,T.MOLDOVEANU REVDAT 3 18-OCT-23 7M5B 1 REMARK REVDAT 2 03-AUG-22 7M5B 1 JRNL REVDAT 1 12-JAN-22 7M5B 0 JRNL AUTH G.SINGH,C.D.GUIBAO,J.SEETHARAMAN,A.AGGARWAL,C.R.GRACE, JRNL AUTH 2 D.E.MCNAMARA,S.VAITHIYALINGAM,M.B.WADDELL,T.MOLDOVEANU JRNL TITL STRUCTURAL BASIS OF BAK ACTIVATION IN MITOCHONDRIAL JRNL TITL 2 APOPTOSIS INITIATION. JRNL REF NAT COMMUN V. 13 250 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35017502 JRNL DOI 10.1038/S41467-021-27851-Y REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3546 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 35670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0780 - 4.3479 0.95 2986 154 0.1667 0.1958 REMARK 3 2 4.3479 - 3.4519 1.00 2975 163 0.1461 0.1606 REMARK 3 3 3.4519 - 3.0158 0.94 2816 126 0.1646 0.2027 REMARK 3 4 3.0158 - 2.7401 0.99 2908 158 0.1620 0.2135 REMARK 3 5 2.7401 - 2.5438 0.99 2887 157 0.1660 0.2156 REMARK 3 6 2.5438 - 2.3938 0.99 2858 170 0.1675 0.2134 REMARK 3 7 2.3938 - 2.2740 0.99 2860 167 0.1639 0.2038 REMARK 3 8 2.2740 - 2.1750 0.96 2802 146 0.1718 0.2257 REMARK 3 9 2.1750 - 2.0913 0.91 2609 143 0.1727 0.2071 REMARK 3 10 2.0913 - 2.0191 0.90 2591 148 0.1953 0.2311 REMARK 3 11 2.0191 - 1.9560 0.78 2242 123 0.2115 0.2641 REMARK 3 12 1.9560 - 1.9001 0.63 1839 91 0.2598 0.2665 REMARK 3 13 1.9001 - 1.8500 0.51 1486 65 0.3069 0.3361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3921 41.9245 53.9402 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.1668 REMARK 3 T33: 0.1162 T12: -0.0656 REMARK 3 T13: 0.0295 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.4228 L22: 0.8291 REMARK 3 L33: 1.6147 L12: 0.8293 REMARK 3 L13: -0.0987 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.1292 S12: 0.1998 S13: -0.1648 REMARK 3 S21: -0.4301 S22: 0.0803 S23: 0.0677 REMARK 3 S31: 0.3777 S32: -0.1900 S33: -0.0153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6419 43.7807 63.1806 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.1619 REMARK 3 T33: 0.1390 T12: 0.0364 REMARK 3 T13: 0.0289 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.9470 L22: 1.1155 REMARK 3 L33: 0.7540 L12: 0.5961 REMARK 3 L13: 0.6963 L23: 0.3259 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.1112 S13: -0.1631 REMARK 3 S21: -0.2523 S22: 0.0726 S23: -0.1453 REMARK 3 S31: 0.0464 S32: 0.2681 S33: 1.0805 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9673 49.1702 62.4943 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0978 REMARK 3 T33: 0.0729 T12: 0.0001 REMARK 3 T13: -0.0045 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 0.4775 L22: 0.5875 REMARK 3 L33: 0.9270 L12: -0.1163 REMARK 3 L13: -0.0691 L23: 0.0094 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.0543 S13: 0.0467 REMARK 3 S21: -0.1470 S22: 0.0301 S23: 0.0572 REMARK 3 S31: -0.0202 S32: -0.0478 S33: -0.1128 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7767 53.4619 66.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.0602 T22: 0.1450 REMARK 3 T33: 0.1242 T12: -0.0376 REMARK 3 T13: -0.0124 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.1911 L22: 0.9951 REMARK 3 L33: 0.9384 L12: -0.1206 REMARK 3 L13: 0.3320 L23: 0.2017 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.1503 S13: 0.0735 REMARK 3 S21: -0.0164 S22: 0.0104 S23: -0.1472 REMARK 3 S31: -0.0985 S32: 0.0233 S33: -0.0942 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 21 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6354 63.1599 87.0324 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.1297 REMARK 3 T33: 0.1163 T12: -0.0060 REMARK 3 T13: 0.0326 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 0.7356 L22: 0.7906 REMARK 3 L33: 1.2624 L12: -0.6033 REMARK 3 L13: 0.3365 L23: 0.2968 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.1905 S13: 0.1568 REMARK 3 S21: 0.1998 S22: -0.0103 S23: 0.0358 REMARK 3 S31: 0.0952 S32: 0.1526 S33: -0.2046 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 48 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1086 62.4255 92.2884 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.1681 REMARK 3 T33: 0.1395 T12: 0.0094 REMARK 3 T13: 0.0311 T23: -0.0757 REMARK 3 L TENSOR REMARK 3 L11: 3.9163 L22: 1.6277 REMARK 3 L33: 0.8746 L12: 0.2182 REMARK 3 L13: 0.5323 L23: 0.7058 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: -0.3412 S13: -0.1167 REMARK 3 S21: 0.4918 S22: -0.0492 S23: 0.1056 REMARK 3 S31: 0.2561 S32: -0.0018 S33: 0.0808 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 83 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5331 50.3448 80.4454 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.2639 REMARK 3 T33: 0.3374 T12: -0.0143 REMARK 3 T13: 0.0012 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.0764 L22: 0.0158 REMARK 3 L33: 0.2359 L12: 0.0347 REMARK 3 L13: -0.1342 L23: -0.0610 REMARK 3 S TENSOR REMARK 3 S11: -0.0693 S12: -0.4722 S13: 0.0185 REMARK 3 S21: 0.2281 S22: 0.1195 S23: 0.1504 REMARK 3 S31: 0.0462 S32: -0.1496 S33: 0.0122 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 101 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2963 56.4817 78.9301 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0867 REMARK 3 T33: 0.0847 T12: 0.0077 REMARK 3 T13: -0.0083 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.0478 L22: 1.2786 REMARK 3 L33: 1.7119 L12: 0.5013 REMARK 3 L13: -0.1828 L23: 1.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: -0.0754 S13: -0.0596 REMARK 3 S21: 0.0832 S22: 0.0413 S23: 0.0063 REMARK 3 S31: 0.0694 S32: 0.0844 S33: -0.0016 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 81 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3233 57.3552 72.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.1797 REMARK 3 T33: 0.2293 T12: 0.0064 REMARK 3 T13: -0.0756 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.3165 L22: 0.8109 REMARK 3 L33: 0.6034 L12: 0.0106 REMARK 3 L13: 0.1724 L23: -0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: -0.0901 S13: 0.2428 REMARK 3 S21: -0.0575 S22: 0.0294 S23: -0.0262 REMARK 3 S31: -0.1505 S32: -0.1086 S33: -0.1138 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 22 THROUGH 49 OR REMARK 3 (RESID 55 THROUGH 56 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 57 THROUGH 119 OR (RESID 120 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 121 THROUGH 155 OR REMARK 3 (RESID 156 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 157 REMARK 3 THROUGH 183 OR (RESID 184 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 185)) REMARK 3 SELECTION : (CHAIN C AND (RESID 22 THROUGH 62 OR REMARK 3 (RESID 66 THROUGH 68 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 69 THROUGH 185)) REMARK 3 ATOM PAIRS NUMBER : 930 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 81 THROUGH 103 OR REMARK 3 (RESID 104 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 144 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 1.11.1_2575 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39200 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.86300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2VWZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000 0.2 M NACL 0.1 MES 6.5, REMARK 280 PH 6.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.09500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.58800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.09500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.58800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 50 REMARK 465 GLY A 51 REMARK 465 VAL A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 LEU A 63 REMARK 465 PRO A 64 REMARK 465 LEU A 65 REMARK 465 GLY A 186 REMARK 465 ALA C 49 REMARK 465 GLU C 50 REMARK 465 GLY C 51 REMARK 465 VAL C 52 REMARK 465 ALA C 53 REMARK 465 GLY C 186 REMARK 465 GLU D 80 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 GLN A 66 CG CD OE1 NE2 REMARK 470 PRO A 67 CG CD REMARK 470 SER A 68 OG REMARK 470 SER C 21 OG REMARK 470 GLU C 48 CG CD OE1 OE2 REMARK 470 PRO C 55 CG CD REMARK 470 GLU C 120 CG CD OE1 OE2 REMARK 470 ARG C 156 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 299 O HOH C 303 1.96 REMARK 500 NH2 ARG B 88 OE2 GLU C 92 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 92 OE2 REMARK 620 2 HIS B 89 NE2 92.6 REMARK 620 3 GLU C 92 OE1 176.3 84.5 REMARK 620 4 HIS D 89 NE2 89.6 176.0 93.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 DBREF 7M5B A 21 186 UNP Q16611 BAK_HUMAN 21 186 DBREF 7M5B B 80 100 UNP P55957 BID_HUMAN 80 100 DBREF 7M5B C 21 186 UNP Q16611 BAK_HUMAN 21 186 DBREF 7M5B D 80 100 UNP P55957 BID_HUMAN 80 100 SEQADV 7M5B SER A 166 UNP Q16611 CYS 166 CONFLICT SEQADV 7M5B CYS A 184 UNP Q16611 GLY 184 CONFLICT SEQADV 7M5B MET B 93 UNP P55957 VAL 93 CONFLICT SEQADV 7M5B TRP B 101 UNP P55957 EXPRESSION TAG SEQADV 7M5B GLY B 102 UNP P55957 EXPRESSION TAG SEQADV 7M5B GLY B 103 UNP P55957 EXPRESSION TAG SEQADV 7M5B CYS B 104 UNP P55957 EXPRESSION TAG SEQADV 7M5B SER C 166 UNP Q16611 CYS 166 CONFLICT SEQADV 7M5B CYS C 184 UNP Q16611 GLY 184 CONFLICT SEQADV 7M5B MET D 93 UNP P55957 VAL 93 CONFLICT SEQADV 7M5B TRP D 101 UNP P55957 EXPRESSION TAG SEQADV 7M5B GLY D 102 UNP P55957 EXPRESSION TAG SEQADV 7M5B GLY D 103 UNP P55957 EXPRESSION TAG SEQADV 7M5B CYS D 104 UNP P55957 EXPRESSION TAG SEQRES 1 A 166 SER ALA SER GLU GLU GLN VAL ALA GLN ASP THR GLU GLU SEQRES 2 A 166 VAL PHE ARG SER TYR VAL PHE TYR ARG HIS GLN GLN GLU SEQRES 3 A 166 GLN GLU ALA GLU GLY VAL ALA ALA PRO ALA ASP PRO GLU SEQRES 4 A 166 MET VAL THR LEU PRO LEU GLN PRO SER SER THR MET GLY SEQRES 5 A 166 GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP ASP ILE SEQRES 6 A 166 ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET LEU GLN SEQRES 7 A 166 HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU TYR PHE SEQRES 8 A 166 THR LYS ILE ALA THR SER LEU PHE GLU SER GLY ILE ASN SEQRES 9 A 166 TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY TYR ARG SEQRES 10 A 166 LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU THR GLY PHE SEQRES 11 A 166 LEU GLY GLN VAL THR ARG PHE VAL VAL ASP PHE MET LEU SEQRES 12 A 166 HIS HIS SER ILE ALA ARG TRP ILE ALA GLN ARG GLY GLY SEQRES 13 A 166 TRP VAL ALA ALA LEU ASN LEU CYS ASN GLY SEQRES 1 B 25 GLU ASP ILE ILE ARG ASN ILE ALA ARG HIS LEU ALA GLN SEQRES 2 B 25 MET GLY ASP SER MET ASP ARG SER TRP GLY GLY CYS SEQRES 1 C 166 SER ALA SER GLU GLU GLN VAL ALA GLN ASP THR GLU GLU SEQRES 2 C 166 VAL PHE ARG SER TYR VAL PHE TYR ARG HIS GLN GLN GLU SEQRES 3 C 166 GLN GLU ALA GLU GLY VAL ALA ALA PRO ALA ASP PRO GLU SEQRES 4 C 166 MET VAL THR LEU PRO LEU GLN PRO SER SER THR MET GLY SEQRES 5 C 166 GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP ASP ILE SEQRES 6 C 166 ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET LEU GLN SEQRES 7 C 166 HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU TYR PHE SEQRES 8 C 166 THR LYS ILE ALA THR SER LEU PHE GLU SER GLY ILE ASN SEQRES 9 C 166 TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY TYR ARG SEQRES 10 C 166 LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU THR GLY PHE SEQRES 11 C 166 LEU GLY GLN VAL THR ARG PHE VAL VAL ASP PHE MET LEU SEQRES 12 C 166 HIS HIS SER ILE ALA ARG TRP ILE ALA GLN ARG GLY GLY SEQRES 13 C 166 TRP VAL ALA ALA LEU ASN LEU CYS ASN GLY SEQRES 1 D 25 GLU ASP ILE ILE ARG ASN ILE ALA ARG HIS LEU ALA GLN SEQRES 2 D 25 MET GLY ASP SER MET ASP ARG SER TRP GLY GLY CYS HET CU B 201 1 HETNAM CU COPPER (II) ION FORMUL 5 CU CU 2+ FORMUL 6 HOH *304(H2 O) HELIX 1 AA1 SER A 21 GLU A 48 1 28 HELIX 2 AA2 SER A 69 GLY A 82 1 14 HELIX 3 AA3 GLY A 82 TYR A 89 1 8 HELIX 4 AA4 TYR A 89 GLN A 101 1 13 HELIX 5 AA5 ASN A 106 GLU A 120 1 15 HELIX 6 AA6 ASN A 124 HIS A 145 1 22 HELIX 7 AA7 PHE A 150 HIS A 165 1 16 HELIX 8 AA8 SER A 166 ARG A 174 1 9 HELIX 9 AA9 GLY A 175 LEU A 181 5 7 HELIX 10 AB1 ASP B 81 TRP B 101 1 21 HELIX 11 AB2 SER C 23 GLU C 48 1 26 HELIX 12 AB3 ASP C 57 THR C 62 1 6 HELIX 13 AB4 SER C 69 GLY C 82 1 14 HELIX 14 AB5 GLY C 82 GLN C 101 1 20 HELIX 15 AB6 ASN C 106 GLU C 120 1 15 HELIX 16 AB7 ASN C 124 HIS C 145 1 22 HELIX 17 AB8 PHE C 150 HIS C 165 1 16 HELIX 18 AB9 SER C 166 ARG C 174 1 9 HELIX 19 AC1 GLY C 175 LEU C 183 5 9 HELIX 20 AC2 ILE D 82 TRP D 101 1 20 SHEET 1 AA1 2 LEU A 183 CYS A 184 0 SHEET 2 AA1 2 GLY B 102 GLY B 103 -1 O GLY B 102 N CYS A 184 SSBOND 1 CYS A 184 CYS B 104 1555 1555 2.07 SSBOND 2 CYS C 184 CYS D 104 1555 1555 2.59 LINK OE2 GLU A 92 CU CU B 201 1555 1555 2.23 LINK NE2 HIS B 89 CU CU B 201 1555 1555 2.03 LINK CU CU B 201 OE1 GLU C 92 1555 1555 2.29 LINK CU CU B 201 NE2 HIS D 89 1555 1555 2.05 SITE 1 AC1 5 GLU A 92 HIS B 89 GLU C 92 HIS D 89 SITE 2 AC1 5 HOH D 203 CRYST1 50.190 83.176 110.030 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009088 0.00000