HEADER MEMBRANE PROTEIN 30-MAR-21 7M8W TITLE XFEL CRYSTAL STRUCTURE OF THE PROSTAGLANDIN D2 RECEPTOR CRTH2 IN TITLE 2 COMPLEX WITH 15R-METHYL-PGD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN D2 RECEPTOR 2, ENDOLYSIN CHIMERA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN, BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: PTGDR2, CRTH2, DL1R, GPR44, E, T4TP126; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROSTAGLANDIN D2 RECEPTOR, CRTH2, 15R-METHYL-PGD2, G PROTEIN-COUPLED KEYWDS 2 RECEPTOR, GPCR, ENDOLYSIN FUSION, MEMBRANE PROTEIN, LCP EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIRIAEVA,G.W.HAN,V.CHEREZOV REVDAT 2 18-OCT-23 7M8W 1 REMARK REVDAT 1 25-AUG-21 7M8W 0 JRNL AUTH H.LIU,R.N.V.K.DEEPAK,A.SHIRIAEVA,C.GATI,A.BATYUK,H.HU, JRNL AUTH 2 U.WEIERSTALL,W.LIU,L.WANG,V.CHEREZOV,H.FAN,C.ZHANG JRNL TITL MOLECULAR BASIS FOR LIPID RECOGNITION BY THE PROSTAGLANDIN D JRNL TITL 2 2 RECEPTOR CRTH2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34341104 JRNL DOI 10.1073/PNAS.2102813118 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 53.4 REMARK 3 NUMBER OF REFLECTIONS : 15642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4300 - 4.7300 1.00 4866 257 0.2239 0.2489 REMARK 3 2 4.7300 - 3.7600 1.00 4659 245 0.2074 0.2650 REMARK 3 3 3.7600 - 3.2800 0.65 3021 154 0.2611 0.2918 REMARK 3 4 3.2800 - 2.9800 0.28 1274 60 0.2850 0.2846 REMARK 3 5 2.9800 - 2.7700 0.15 656 38 0.3205 0.3855 REMARK 3 6 2.7700 - 2.6100 0.09 385 27 0.3290 0.4058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2200 -57.0611 531.3694 REMARK 3 T TENSOR REMARK 3 T11: 0.7713 T22: 0.7296 REMARK 3 T33: 0.5198 T12: 0.0390 REMARK 3 T13: -0.1143 T23: 0.1412 REMARK 3 L TENSOR REMARK 3 L11: 0.9951 L22: 1.1180 REMARK 3 L33: 0.2731 L12: 0.3968 REMARK 3 L13: -0.2781 L23: 0.3145 REMARK 3 S TENSOR REMARK 3 S11: -0.2988 S12: 0.7457 S13: -0.1656 REMARK 3 S21: -1.3323 S22: 0.5046 S23: 0.5914 REMARK 3 S31: 0.3432 S32: -0.0173 S33: 0.0146 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 903 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8174 -55.2577 560.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: -0.0271 REMARK 3 T33: 0.1838 T12: 0.1420 REMARK 3 T13: 0.0586 T23: 0.0779 REMARK 3 L TENSOR REMARK 3 L11: 2.3665 L22: 1.3469 REMARK 3 L33: 2.8493 L12: -0.0024 REMARK 3 L13: 0.9019 L23: -0.4400 REMARK 3 S TENSOR REMARK 3 S11: -0.1856 S12: 0.0344 S13: 0.1083 REMARK 3 S21: -0.0392 S22: 0.0860 S23: 0.0027 REMARK 3 S31: -0.0401 S32: -0.1793 S33: -0.0752 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 904 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1162 -48.0840 597.9843 REMARK 3 T TENSOR REMARK 3 T11: 0.4279 T22: 0.4541 REMARK 3 T33: 0.4269 T12: 0.1452 REMARK 3 T13: -0.1231 T23: -0.1301 REMARK 3 L TENSOR REMARK 3 L11: 2.6415 L22: 1.9935 REMARK 3 L33: 2.3411 L12: -0.3103 REMARK 3 L13: -0.6475 L23: 1.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.2472 S12: -0.2398 S13: -0.0241 REMARK 3 S21: 0.3697 S22: 0.5209 S23: -0.5516 REMARK 3 S31: 0.5073 S32: 0.7806 S33: 0.0085 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9660 -61.6620 561.9317 REMARK 3 T TENSOR REMARK 3 T11: 0.2414 T22: 0.0610 REMARK 3 T33: 0.2866 T12: -0.0969 REMARK 3 T13: -0.0776 T23: 0.1386 REMARK 3 L TENSOR REMARK 3 L11: 1.9999 L22: 1.8119 REMARK 3 L33: 2.2363 L12: 0.1853 REMARK 3 L13: 1.5916 L23: -0.8199 REMARK 3 S TENSOR REMARK 3 S11: -0.1445 S12: -0.0281 S13: -0.1024 REMARK 3 S21: -0.1082 S22: 0.0961 S23: 0.2693 REMARK 3 S31: 0.6089 S32: -0.4409 S33: -0.0555 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 20358 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : CXI REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE CXI REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.33 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : CS-PAD CXI-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29269 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 32.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 61.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6D27 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, LITHIUM SULPHATE, REMARK 280 SODIUM CITRATE TRIBASIC DIHYDRATE, PEG 300, PROPYLENE GLYCOL REMARK 280 P400, PGD2, PH 6.0, LIPIDIC CUBIC PHASE, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 132.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET A 1049 REMARK 465 LEU A 1050 REMARK 465 ARG A 1051 REMARK 465 ILE A 1052 REMARK 465 ASP A 1053 REMARK 465 GLU A 1054 REMARK 465 GLY A 1055 REMARK 465 GLY A 1056 REMARK 465 GLY A 1057 REMARK 465 SER A 1058 REMARK 465 GLY A 1059 REMARK 465 GLY A 1060 REMARK 465 ASP A 1061 REMARK 465 GLU A 1062 REMARK 465 ALA A 1063 REMARK 465 SER A 331 REMARK 465 GLU A 332 REMARK 465 LEU A 333 REMARK 465 GLY A 334 REMARK 465 GLY A 335 REMARK 465 ALA A 336 REMARK 465 GLY A 337 REMARK 465 SER A 338 REMARK 465 SER A 339 REMARK 465 LEU A 340 REMARK 465 GLU A 341 REMARK 465 VAL A 342 REMARK 465 LEU A 343 REMARK 465 PHE A 344 REMARK 465 GLN A 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 22 OG REMARK 470 TYR A 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A1002 CG OD1 ND2 REMARK 470 PHE A1004 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A1064 CG CD OE1 OE2 REMARK 470 LYS A1065 CG CD CE NZ REMARK 470 ARG A 317 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 329 CG OD1 OD2 REMARK 470 ASP A 330 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 23 -127.22 57.93 REMARK 500 SER A 27 -6.18 66.05 REMARK 500 HIS A 95 64.76 65.40 REMARK 500 LEU A 99 54.55 -116.79 REMARK 500 ASN A 190 66.69 29.47 REMARK 500 PHE A 215 -62.83 -153.27 REMARK 500 PHE A1004 11.12 84.41 REMARK 500 GLN A1069 37.96 -163.41 REMARK 500 ARG A 239 60.12 71.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 76 OG REMARK 620 2 ASP A 77 OD1 86.4 REMARK 620 3 ASN A 114 OD1 57.8 82.8 REMARK 620 4 SER A 118 OG 76.7 133.9 51.8 REMARK 620 N 1 2 3 DBREF 7M8W A 1 236 UNP Q9Y5Y4 PD2R2_HUMAN 1 236 DBREF 7M8W A 1002 1055 UNP D9IEF7 D9IEF7_BPT4 2 12 DBREF 7M8W A 1061 1161 UNP D9IEF7 D9IEF7_BPT4 61 161 DBREF 7M8W A 238 339 UNP Q9Y5Y4 PD2R2_HUMAN 238 339 SEQADV 7M8W GLY A 0 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 7M8W ALA A 25 UNP Q9Y5Y4 ASN 25 ENGINEERED MUTATION SEQADV 7M8W ALA A 204 UNP Q9Y5Y4 VAL 204 VARIANT SEQADV 7M8W ALA A 900 UNP Q9Y5Y4 LINKER SEQADV 7M8W ASP A 901 UNP Q9Y5Y4 LINKER SEQADV 7M8W LEU A 902 UNP Q9Y5Y4 LINKER SEQADV 7M8W GLY A 903 UNP Q9Y5Y4 LINKER SEQADV 7M8W LEU A 904 UNP Q9Y5Y4 LINKER SEQADV 7M8W GLN A 905 UNP Q9Y5Y4 LINKER SEQADV 7M8W HIS A 906 UNP Q9Y5Y4 LINKER SEQADV 7M8W ARG A 907 UNP Q9Y5Y4 LINKER SEQADV 7M8W GLY A 1056 UNP D9IEF7 LINKER SEQADV 7M8W GLY A 1057 UNP D9IEF7 LINKER SEQADV 7M8W SER A 1058 UNP D9IEF7 LINKER SEQADV 7M8W GLY A 1059 UNP D9IEF7 LINKER SEQADV 7M8W GLY A 1060 UNP D9IEF7 LINKER SEQADV 7M8W ALA A 1097 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQADV 7M8W LEU A 340 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 7M8W GLU A 341 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 7M8W VAL A 342 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 7M8W LEU A 343 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 7M8W PHE A 344 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 7M8W GLN A 345 UNP Q9Y5Y4 EXPRESSION TAG SEQRES 1 A 470 GLY MET SER ALA ASN ALA THR LEU LYS PRO LEU CYS PRO SEQRES 2 A 470 ILE LEU GLU GLN MET SER ARG LEU GLN SER HIS SER ALA SEQRES 3 A 470 THR SER ILE ARG TYR ILE ASP HIS ALA ALA VAL LEU LEU SEQRES 4 A 470 HIS GLY LEU ALA SER LEU LEU GLY LEU VAL GLU ASN GLY SEQRES 5 A 470 VAL ILE LEU PHE VAL VAL GLY CYS ARG MET ARG GLN THR SEQRES 6 A 470 VAL VAL THR THR TRP VAL LEU HIS LEU ALA LEU SER ASP SEQRES 7 A 470 LEU LEU ALA SER ALA SER LEU PRO PHE PHE THR TYR PHE SEQRES 8 A 470 LEU ALA VAL GLY HIS SER TRP GLU LEU GLY THR THR PHE SEQRES 9 A 470 CYS LYS LEU HIS SER SER ILE PHE PHE LEU ASN MET PHE SEQRES 10 A 470 ALA SER GLY PHE LEU LEU SER ALA ILE SER LEU ASP ARG SEQRES 11 A 470 CYS LEU GLN VAL VAL ARG PRO VAL TRP ALA GLN ASN HIS SEQRES 12 A 470 ARG THR VAL ALA ALA ALA HIS LYS VAL CYS LEU VAL LEU SEQRES 13 A 470 TRP ALA LEU ALA VAL LEU ASN THR VAL PRO TYR PHE VAL SEQRES 14 A 470 PHE ARG ASP THR ILE SER ARG LEU ASP GLY ARG ILE MET SEQRES 15 A 470 CYS TYR TYR ASN VAL LEU LEU LEU ASN PRO GLY PRO ASP SEQRES 16 A 470 ARG ASP ALA THR CYS ASN SER ARG GLN ALA ALA LEU ALA SEQRES 17 A 470 VAL SER LYS PHE LEU LEU ALA PHE LEU VAL PRO LEU ALA SEQRES 18 A 470 ILE ILE ALA SER SER HIS ALA ALA VAL SER LEU ARG LEU SEQRES 19 A 470 GLN HIS ARG ALA ASP LEU GLY LEU GLN HIS ARG ASN ILE SEQRES 20 A 470 PHE GLU MET LEU ARG ILE ASP GLU GLY GLY GLY SER GLY SEQRES 21 A 470 GLY ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 22 A 470 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 23 A 470 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 24 A 470 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 25 A 470 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 26 A 470 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 27 A 470 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 28 A 470 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR ARG ARG SEQRES 29 A 470 ARG PRO GLY ARG PHE VAL ARG LEU VAL ALA ALA VAL VAL SEQRES 30 A 470 ALA ALA PHE ALA LEU CYS TRP GLY PRO TYR HIS VAL PHE SEQRES 31 A 470 SER LEU LEU GLU ALA ARG ALA HIS ALA ASN PRO GLY LEU SEQRES 32 A 470 ARG PRO LEU VAL TRP ARG GLY LEU PRO PHE VAL THR SER SEQRES 33 A 470 LEU ALA PHE PHE ASN SER VAL ALA ASN PRO VAL LEU TYR SEQRES 34 A 470 VAL LEU THR YCM PRO ASP MET LEU ARG LYS LEU ARG ARG SEQRES 35 A 470 SER LEU ARG THR VAL LEU GLU SER VAL LEU VAL ASP ASP SEQRES 36 A 470 SER GLU LEU GLY GLY ALA GLY SER SER LEU GLU VAL LEU SEQRES 37 A 470 PHE GLN MODRES 7M8W YCM A 308 CYS MODIFIED RESIDUE HET YCM A 308 10 HET YSS A2401 26 HET NA A2402 1 HET FLC A2403 13 HET SO4 A2404 5 HET SO4 A2405 5 HET SO4 A2406 5 HET SO4 A2407 5 HET SO4 A2408 5 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM YSS 15R-METHYL-PROSTAGLANDIN D2 HETNAM NA SODIUM ION HETNAM FLC CITRATE ANION HETNAM SO4 SULFATE ION HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN YSS (5Z,13E,15R,16E)-9ALPHA,15-DIHYDROXY-15-METHYL-11-OXO- HETSYN 2 YSS 12ALPHA-PROSTA-5,13,16-TRIEN-1-OIC ACID FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 2 YSS C21 H34 O5 FORMUL 3 NA NA 1+ FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *12(H2 O) HELIX 1 AA1 CYS A 11 LEU A 20 1 10 HELIX 2 AA2 ASP A 32 ARG A 60 1 29 HELIX 3 AA3 THR A 64 VAL A 93 1 30 HELIX 4 AA4 THR A 101 ARG A 135 1 35 HELIX 5 AA5 ARG A 135 ARG A 143 1 9 HELIX 6 AA6 THR A 144 THR A 163 1 20 HELIX 7 AA7 THR A 163 PHE A 169 1 7 HELIX 8 AA8 VAL A 186 LEU A 189 5 4 HELIX 9 AA9 ASP A 194 ALA A 214 1 21 HELIX 10 AB1 PHE A 215 LEU A 904 1 27 HELIX 11 AB2 ASP A 1070 ASN A 1081 1 12 HELIX 12 AB3 LEU A 1084 SER A 1090 1 7 HELIX 13 AB4 ASP A 1092 ALA A 1112 1 21 HELIX 14 AB5 PHE A 1114 GLN A 1123 1 10 HELIX 15 AB6 ARG A 1125 LYS A 1135 1 11 HELIX 16 AB7 SER A 1136 THR A 1142 1 7 HELIX 17 AB8 THR A 1142 GLY A 1156 1 15 HELIX 18 AB9 TRP A 1158 ARG A 238 5 5 HELIX 19 AC1 PHE A 244 HIS A 273 1 30 HELIX 20 AC2 ALA A 274 PRO A 276 5 3 HELIX 21 AC3 GLY A 277 THR A 307 1 31 HELIX 22 AC4 YCM A 308 SER A 325 1 18 SHEET 1 AA1 2 ARG A 170 SER A 174 0 SHEET 2 AA1 2 ILE A 180 TYR A 184 -1 O MET A 181 N ILE A 173 SSBOND 1 CYS A 11 CYS A 199 1555 1555 2.03 SSBOND 2 CYS A 104 CYS A 182 1555 1555 2.03 LINK C THR A 307 N YCM A 308 1555 1555 1.33 LINK C YCM A 308 N PRO A 309 1555 1555 1.34 LINK OG SER A 76 NA NA A2402 1555 1555 3.19 LINK OD1 ASP A 77 NA NA A2402 1555 1555 2.35 LINK OD1 ASN A 114 NA NA A2402 1555 1555 3.16 LINK OG SER A 118 NA NA A2402 1555 1555 2.43 CRYST1 51.400 67.800 265.400 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019455 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003768 0.00000