HEADER DNA BINDING PROTEIN 01-APR-21 7MC3 TITLE SOLUTION STRUCTURE OF MIZ-1 ZINC FINGER 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN COMPND 3 17; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MYC-INTERACTING ZINC FINGER PROTEIN 1,MIZ-1,ZINC FINGER COMPND 6 PROTEIN 151,ZINC FINGER PROTEIN 60; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB17, MIZ1, ZNF151, ZNF60; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3*); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ZINC FINGER, C2H2, DNA BINDING, TRANSCRIPTION FACTOR, DNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.BOISVERT,P.LAVIGNE REVDAT 4 15-MAY-24 7MC3 1 REMARK REVDAT 3 14-JUN-23 7MC3 1 REMARK REVDAT 2 04-MAY-22 7MC3 1 JRNL REVDAT 1 21-APR-21 7MC3 0 JRNL AUTH O.BOISVERT,D.LETOURNEAU,P.DELATTRE,C.TREMBLAY,E.JOLIBOIS, JRNL AUTH 2 M.MONTAGNE,P.LAVIGNE JRNL TITL ZINC FINGERS 10 AND 11 OF MIZ-1 UNDERGO CONFORMATIONAL JRNL TITL 2 EXCHANGE TO ACHIEVE SPECIFIC DNA BINDING. JRNL REF STRUCTURE V. 30 623 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 34963061 JRNL DOI 10.1016/J.STR.2021.12.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255894. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] MIZ REMARK 210 -1 ZINC FINGER 10_12, 4 MM ZINC REMARK 210 ION, 50 MM BIS-TRIS, 50 MM REMARK 210 POTASSIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HNCO; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D 1H-13C NOESY; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3, CCPNMR ANALYSIS 2.4, REMARK 210 DANGLE 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 TYR A 4 REMARK 465 VAL A 5 REMARK 465 CYS A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 8 REMARK 465 CYS A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 PHE A 13 REMARK 465 VAL A 14 REMARK 465 GLN A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 ASN A 21 REMARK 465 HIS A 22 REMARK 465 ILE A 23 REMARK 465 ARG A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 ASP A 27 REMARK 465 ASN A 28 REMARK 465 ILE A 29 REMARK 465 ARG A 30 REMARK 465 PRO A 31 REMARK 465 TYR A 32 REMARK 465 LYS A 33 REMARK 465 CYS A 34 REMARK 465 SER A 35 REMARK 465 VAL A 36 REMARK 465 CYS A 37 REMARK 465 SER A 38 REMARK 465 LYS A 39 REMARK 465 ALA A 40 REMARK 465 PHE A 41 REMARK 465 VAL A 42 REMARK 465 ASN A 43 REMARK 465 VAL A 44 REMARK 465 GLY A 45 REMARK 465 ASP A 46 REMARK 465 LEU A 47 REMARK 465 SER A 48 REMARK 465 LYS A 49 REMARK 465 HIS A 50 REMARK 465 ILE A 51 REMARK 465 ILE A 52 REMARK 465 ILE A 53 REMARK 465 HIS A 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 84 -64.05 -107.09 REMARK 500 2 THR A 81 -63.13 -102.17 REMARK 500 2 GLN A 84 -67.80 -139.69 REMARK 500 3 GLU A 57 123.21 67.71 REMARK 500 3 CYS A 62 98.30 -68.35 REMARK 500 3 GLN A 84 -61.41 -92.09 REMARK 500 4 GLU A 57 146.28 63.94 REMARK 500 4 GLN A 84 -66.00 -140.42 REMARK 500 5 CYS A 62 98.57 -68.65 REMARK 500 5 CYS A 65 -36.26 -140.67 REMARK 500 5 GLN A 84 -61.44 -127.23 REMARK 500 7 CYS A 62 99.25 -68.29 REMARK 500 7 GLN A 84 -49.69 -136.23 REMARK 500 8 GLU A 57 143.74 66.29 REMARK 500 8 CYS A 62 99.16 -58.06 REMARK 500 8 GLN A 84 -70.75 -136.85 REMARK 500 9 CYS A 62 99.31 -64.38 REMARK 500 9 THR A 81 -62.62 -100.59 REMARK 500 9 GLN A 84 -68.05 -138.19 REMARK 500 10 GLN A 84 -51.43 -139.29 REMARK 500 11 GLU A 57 134.10 65.87 REMARK 500 11 CYS A 62 99.64 -61.82 REMARK 500 12 CYS A 62 99.97 -68.26 REMARK 500 13 GLN A 84 -60.98 -91.00 REMARK 500 14 CYS A 62 99.87 -68.30 REMARK 500 14 GLN A 84 -65.64 -106.29 REMARK 500 15 CYS A 62 98.19 -68.42 REMARK 500 15 CYS A 65 -24.20 -140.43 REMARK 500 15 GLN A 84 -67.61 -141.97 REMARK 500 16 CYS A 62 99.80 -55.20 REMARK 500 19 CYS A 62 99.88 -68.53 REMARK 500 20 CYS A 65 -32.39 -136.84 REMARK 500 20 GLN A 84 -69.44 -138.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 108.3 REMARK 620 3 HIS A 78 NE2 108.8 106.9 REMARK 620 4 HIS A 83 NE2 110.6 113.0 109.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50842 RELATED DB: BMRB DBREF 7MC3 A 2 85 UNP Q13105 ZBT17_HUMAN 556 639 SEQADV 7MC3 MET A 1 UNP Q13105 INITIATING METHIONINE SEQADV 7MC3 TYR A 32 UNP Q13105 HIS 586 ENGINEERED MUTATION SEQRES 1 A 85 MET LYS PRO TYR VAL CYS GLU ARG CYS GLY LYS ARG PHE SEQRES 2 A 85 VAL GLN SER SER GLN LEU ALA ASN HIS ILE ARG HIS HIS SEQRES 3 A 85 ASP ASN ILE ARG PRO TYR LYS CYS SER VAL CYS SER LYS SEQRES 4 A 85 ALA PHE VAL ASN VAL GLY ASP LEU SER LYS HIS ILE ILE SEQRES 5 A 85 ILE HIS THR GLY GLU LYS PRO TYR LEU CYS ASP LYS CYS SEQRES 6 A 85 GLY ARG GLY PHE ASN ARG VAL ASP ASN LEU ARG SER HIS SEQRES 7 A 85 VAL LYS THR VAL HIS GLN GLY HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 AA1 ARG A 71 HIS A 83 1 13 SHEET 1 AA1 2 TYR A 60 LEU A 61 0 SHEET 2 AA1 2 GLY A 68 PHE A 69 -1 O PHE A 69 N TYR A 60 LINK SG CYS A 62 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 65 ZN ZN A 101 1555 1555 2.30 LINK NE2 HIS A 78 ZN ZN A 101 1555 1555 2.01 LINK NE2 HIS A 83 ZN ZN A 101 1555 1555 2.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1