HEADER LYASE 02-APR-21 7MCM TITLE CRYSTAL STRUCTURE OF ENOYL-COA HYDRATASE FROM MYCOLICIBACTERIUM TITLE 2 SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-COA HYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_COMMON: MYCOBACTERIUM SMEGMATIS; SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: MSMEG_3390; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, MSMEG_3390, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 2 CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7MCM 1 REMARK REVDAT 1 14-APR-21 7MCM 0 JRNL AUTH J.ABENDROTH,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF ENOYL-COA HYDRATASE FROM JRNL TITL 2 MYCOLICIBACTERIUM SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 4175 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7000 - 4.9400 1.00 2242 128 0.1503 0.1667 REMARK 3 2 4.9400 - 3.9200 1.00 2188 159 0.1278 0.1431 REMARK 3 3 3.9200 - 3.4300 1.00 2170 150 0.1485 0.1873 REMARK 3 4 3.4300 - 3.1100 1.00 2184 133 0.1841 0.2175 REMARK 3 5 3.1100 - 2.8900 1.00 2191 126 0.1866 0.2707 REMARK 3 6 2.8900 - 2.7200 1.00 2173 140 0.1943 0.2341 REMARK 3 7 2.7200 - 2.5800 1.00 2177 146 0.1943 0.2400 REMARK 3 8 2.5800 - 2.4700 1.00 2145 141 0.1992 0.2657 REMARK 3 9 2.4700 - 2.3800 1.00 2163 147 0.1869 0.2367 REMARK 3 10 2.3800 - 2.2900 1.00 2213 114 0.1940 0.2548 REMARK 3 11 2.2900 - 2.2200 1.00 2140 140 0.1741 0.2339 REMARK 3 12 2.2200 - 2.1600 1.00 2211 111 0.1992 0.2279 REMARK 3 13 2.1600 - 2.1000 1.00 2165 147 0.1718 0.1800 REMARK 3 14 2.1000 - 2.0500 1.00 2176 122 0.1907 0.2300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3251 REMARK 3 ANGLE : 0.873 4446 REMARK 3 CHIRALITY : 0.058 530 REMARK 3 PLANARITY : 0.007 588 REMARK 3 DIHEDRAL : 12.138 1149 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0961 26.0696 40.0514 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.4171 REMARK 3 T33: 0.8305 T12: 0.0110 REMARK 3 T13: 0.1136 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.2462 L22: 3.1985 REMARK 3 L33: 3.1072 L12: -0.8923 REMARK 3 L13: -0.1491 L23: -0.0886 REMARK 3 S TENSOR REMARK 3 S11: -0.3118 S12: -0.2944 S13: -0.6939 REMARK 3 S21: 0.5165 S22: 0.3436 S23: 1.9083 REMARK 3 S31: 0.3830 S32: -0.4379 S33: -0.0127 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0512 20.4635 36.3519 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.3159 REMARK 3 T33: 0.6330 T12: 0.0261 REMARK 3 T13: 0.0694 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.8689 L22: 6.9520 REMARK 3 L33: 4.7001 L12: 0.4686 REMARK 3 L13: 1.5507 L23: -1.0380 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.0413 S13: -0.6388 REMARK 3 S21: -0.1755 S22: -0.0937 S23: 1.3284 REMARK 3 S31: 0.3340 S32: -0.2990 S33: -0.0103 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6731 20.1157 40.1634 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.2331 REMARK 3 T33: 0.2237 T12: 0.0070 REMARK 3 T13: 0.0402 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 4.2344 L22: 4.4535 REMARK 3 L33: 0.5325 L12: -1.8922 REMARK 3 L13: -0.9514 L23: 0.7252 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: -0.2566 S13: -0.1488 REMARK 3 S21: 0.2745 S22: 0.0948 S23: 0.3177 REMARK 3 S31: 0.1508 S32: -0.0978 S33: 0.0801 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4376 32.6122 49.6555 REMARK 3 T TENSOR REMARK 3 T11: 0.5023 T22: 0.4860 REMARK 3 T33: 0.5604 T12: 0.0778 REMARK 3 T13: 0.1844 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 1.5816 L22: 4.1891 REMARK 3 L33: 6.4192 L12: 0.9580 REMARK 3 L13: -1.0214 L23: -4.5573 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.6352 S13: -0.1161 REMARK 3 S21: 1.6154 S22: 0.2866 S23: 1.1471 REMARK 3 S31: -0.3200 S32: -0.1882 S33: -0.4183 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2247 38.4013 31.8621 REMARK 3 T TENSOR REMARK 3 T11: 0.2833 T22: 0.2442 REMARK 3 T33: 0.2171 T12: 0.0307 REMARK 3 T13: -0.0245 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 3.0771 L22: 9.0861 REMARK 3 L33: 5.2112 L12: 0.0163 REMARK 3 L13: -0.0882 L23: -1.7130 REMARK 3 S TENSOR REMARK 3 S11: 0.2189 S12: 0.0143 S13: 0.0942 REMARK 3 S21: -1.0410 S22: 0.1091 S23: -0.0041 REMARK 3 S31: 0.0261 S32: 0.3767 S33: -0.1261 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1901 43.5371 24.0452 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.3517 REMARK 3 T33: 0.1984 T12: 0.0289 REMARK 3 T13: 0.0196 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 9.9440 L22: 7.5331 REMARK 3 L33: 8.8576 L12: 5.3168 REMARK 3 L13: 3.7842 L23: -0.7969 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: 0.3268 S13: 0.4938 REMARK 3 S21: -0.3694 S22: 0.0490 S23: 0.0155 REMARK 3 S31: -0.7769 S32: 0.3194 S33: -0.1267 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8708 17.9407 2.0159 REMARK 3 T TENSOR REMARK 3 T11: 0.2960 T22: 0.4206 REMARK 3 T33: 0.6311 T12: -0.1059 REMARK 3 T13: -0.0608 T23: 0.1031 REMARK 3 L TENSOR REMARK 3 L11: 6.1173 L22: 4.4304 REMARK 3 L33: 5.1501 L12: -2.7072 REMARK 3 L13: 0.4748 L23: 0.4928 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: -0.0189 S13: -1.0686 REMARK 3 S21: -0.5882 S22: 0.3930 S23: 1.7444 REMARK 3 S31: 0.2641 S32: -0.7214 S33: -0.2737 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8054 22.7007 6.8671 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.2594 REMARK 3 T33: 0.3893 T12: -0.0430 REMARK 3 T13: 0.0338 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.6840 L22: 5.1342 REMARK 3 L33: 5.6871 L12: -1.7424 REMARK 3 L13: -0.0657 L23: -1.6294 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: -0.0996 S13: -0.2379 REMARK 3 S21: 0.2276 S22: 0.2107 S23: 0.7745 REMARK 3 S31: 0.0223 S32: -0.5229 S33: -0.0922 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9396 33.4545 -0.7739 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.4253 REMARK 3 T33: 0.4931 T12: 0.0559 REMARK 3 T13: -0.0468 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 3.6430 L22: 7.0797 REMARK 3 L33: 4.5270 L12: 0.8211 REMARK 3 L13: 3.5953 L23: 2.9821 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: -0.2063 S13: 0.8867 REMARK 3 S21: -0.3329 S22: -0.1574 S23: 0.5668 REMARK 3 S31: -1.1220 S32: -1.2104 S33: 0.2232 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4591 31.0863 3.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.2207 T22: 0.2549 REMARK 3 T33: 0.2355 T12: 0.0096 REMARK 3 T13: -0.0226 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.8279 L22: 5.3389 REMARK 3 L33: 0.0733 L12: -0.1489 REMARK 3 L13: 0.1317 L23: 0.5521 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.0339 S13: 0.0253 REMARK 3 S21: 0.1351 S22: -0.0105 S23: 0.3120 REMARK 3 S31: 0.0339 S32: -0.0989 S33: 0.0718 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2867 34.6510 -2.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.2537 REMARK 3 T33: 0.2419 T12: 0.0522 REMARK 3 T13: 0.0099 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.0701 L22: 6.1841 REMARK 3 L33: 4.4829 L12: 1.2023 REMARK 3 L13: 0.0603 L23: 2.2836 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: 0.1199 S13: -0.0102 REMARK 3 S21: -0.1060 S22: 0.0270 S23: -0.1665 REMARK 3 S31: 0.1934 S32: 0.0532 S33: 0.0201 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6075 16.1305 -8.3154 REMARK 3 T TENSOR REMARK 3 T11: 0.4433 T22: 0.3548 REMARK 3 T33: 0.4082 T12: -0.0028 REMARK 3 T13: -0.1088 T23: -0.1393 REMARK 3 L TENSOR REMARK 3 L11: 9.2007 L22: 9.2310 REMARK 3 L33: 4.0551 L12: -6.9535 REMARK 3 L13: 5.0834 L23: -5.9901 REMARK 3 S TENSOR REMARK 3 S11: 0.4424 S12: 0.6452 S13: -0.4721 REMARK 3 S21: -1.4111 S22: -0.2104 S23: 0.8706 REMARK 3 S31: 0.7054 S32: -0.3271 S33: -0.2696 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5809 13.7688 9.4595 REMARK 3 T TENSOR REMARK 3 T11: 0.3951 T22: 0.2903 REMARK 3 T33: 0.2968 T12: 0.0584 REMARK 3 T13: 0.0133 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.3651 L22: 5.8634 REMARK 3 L33: 7.2627 L12: 3.3803 REMARK 3 L13: 2.1882 L23: 2.0489 REMARK 3 S TENSOR REMARK 3 S11: -0.1285 S12: -0.3035 S13: -0.1324 REMARK 3 S21: 0.4726 S22: 0.3877 S23: 0.1341 REMARK 3 S31: -0.4694 S32: 0.1521 S33: -0.1321 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.3569 14.5132 17.0337 REMARK 3 T TENSOR REMARK 3 T11: 0.4011 T22: 0.3652 REMARK 3 T33: 0.1670 T12: -0.0273 REMARK 3 T13: 0.0251 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 9.6394 L22: 7.1023 REMARK 3 L33: 2.1811 L12: -4.2075 REMARK 3 L13: -0.2594 L23: 0.6145 REMARK 3 S TENSOR REMARK 3 S11: -0.1268 S12: -0.2339 S13: -0.3490 REMARK 3 S21: 0.4302 S22: 0.2225 S23: 0.1418 REMARK 3 S31: 0.4292 S32: -0.2139 S33: -0.0542 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 3 through 50 or REMARK 3 resid 52 through 132 or resid 134 through REMARK 3 157 or resid 159 through 161 or resid 163 REMARK 3 through 187 or resid 189 through 223 or REMARK 3 resid 226 through 240)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 3 through 50 or REMARK 3 resid 52 through 59 or (resid 60 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 61 through 132 or REMARK 3 resid 134 through 157 or resid 159 REMARK 3 through 161 or resid 163 through 187 or REMARK 3 resid 189 through 192 or (resid 193 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 194 through 218 or REMARK 3 (resid 219 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 220 REMARK 3 through 223 or resid 226 through 240)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.819 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.84 REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA, MR-ROSETTA REMARK 200 STARTING MODEL: MR-ROSETTA BASED ON TOP5 MODELS FROM HHPRED: 4JCS, REMARK 200 4KD6, 6L3O, 3QMJ, 4MI2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKU REAGENTS JCSG+ SCREEN, REMARK 280 CONDITION B8: 200MM MAGNESIUM CHLORIDE, 100MM TRIS / HCL PH 7.0, REMARK 280 10% (W/V) PEG 8000: MYSMA.00358.N.A1.PS00566 AT 8.7MG/ML: TRAY REMARK 280 319818 B8: CRYO: 20% EG: PUCK ACC1-3, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.87500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.87500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.87500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 104.13000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 52.06500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 90.17923 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 VAL A 68 REMARK 465 ARG A 69 REMARK 465 ASP A 70 REMARK 465 MET A 71 REMARK 465 ARG A 72 REMARK 465 ASP A 73 REMARK 465 ARG A 74 REMARK 465 THR A 75 REMARK 465 GLY A 76 REMARK 465 VAL A 77 REMARK 465 PHE A 78 REMARK 465 GLY A 79 REMARK 465 LEU A 80 REMARK 465 GLY A 81 REMARK 465 PRO A 82 REMARK 465 LEU A 83 REMARK 465 ASP A 84 REMARK 465 GLN A 85 REMARK 465 ARG A 86 REMARK 465 HIS A 87 REMARK 465 GLY A 88 REMARK 465 TYR A 89 REMARK 465 SER A 90 REMARK 465 PRO A 241 REMARK 465 LEU A 242 REMARK 465 ALA A 243 REMARK 465 HIS A 244 REMARK 465 GLN A 245 REMARK 465 ASP A 246 REMARK 465 PRO A 247 REMARK 465 GLU A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 ARG A 251 REMARK 465 ARG A 252 REMARK 465 VAL A 253 REMARK 465 ALA A 254 REMARK 465 GLU A 255 REMARK 465 LEU A 256 REMARK 465 THR A 257 REMARK 465 ARG A 258 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 VAL B 68 REMARK 465 ARG B 69 REMARK 465 ASP B 70 REMARK 465 MET B 71 REMARK 465 ARG B 72 REMARK 465 ASP B 73 REMARK 465 ARG B 74 REMARK 465 THR B 75 REMARK 465 GLY B 76 REMARK 465 VAL B 77 REMARK 465 PHE B 78 REMARK 465 GLY B 79 REMARK 465 LEU B 80 REMARK 465 GLY B 81 REMARK 465 PRO B 82 REMARK 465 LEU B 83 REMARK 465 ASP B 84 REMARK 465 GLN B 85 REMARK 465 ARG B 86 REMARK 465 HIS B 87 REMARK 465 GLY B 88 REMARK 465 TYR B 89 REMARK 465 SER B 90 REMARK 465 LEU B 242 REMARK 465 ALA B 243 REMARK 465 HIS B 244 REMARK 465 GLN B 245 REMARK 465 ASP B 246 REMARK 465 PRO B 247 REMARK 465 GLU B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 ARG B 251 REMARK 465 ARG B 252 REMARK 465 VAL B 253 REMARK 465 ALA B 254 REMARK 465 GLU B 255 REMARK 465 LEU B 256 REMARK 465 THR B 257 REMARK 465 ARG B 258 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 60 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 ILE A 93 CG1 CG2 CD1 REMARK 470 ASP A 193 CG OD1 OD2 REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 67 CG OD1 ND2 REMARK 470 ILE B 93 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 158 O HOH B 301 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 30.76 -143.24 REMARK 500 ALA B 24 30.00 -144.13 REMARK 500 PRO B 148 99.95 -69.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYSMA.00358.N RELATED DB: TARGETTRACK DBREF 7MCM A 3 258 UNP A0QXQ8 A0QXQ8_MYCS2 2 257 DBREF 7MCM B 3 258 UNP A0QXQ8 A0QXQ8_MYCS2 2 257 SEQADV 7MCM GLY A -1 UNP A0QXQ8 EXPRESSION TAG SEQADV 7MCM SER A 0 UNP A0QXQ8 EXPRESSION TAG SEQADV 7MCM MET A 1 UNP A0QXQ8 EXPRESSION TAG SEQADV 7MCM VAL A 2 UNP A0QXQ8 EXPRESSION TAG SEQADV 7MCM GLY B -1 UNP A0QXQ8 EXPRESSION TAG SEQADV 7MCM SER B 0 UNP A0QXQ8 EXPRESSION TAG SEQADV 7MCM MET B 1 UNP A0QXQ8 EXPRESSION TAG SEQADV 7MCM VAL B 2 UNP A0QXQ8 EXPRESSION TAG SEQRES 1 A 260 GLY SER MET VAL THR ALA PRO LEU ARG ILE ASP ARG ALA SEQRES 2 A 260 GLY ARG VAL GLN THR TRP THR ILE ASP VAL PRO ASP ALA SEQRES 3 A 260 ALA ASN ALA ILE THR GLY SER ASP PHE ILE ASP ALA PHE SEQRES 4 A 260 ASP ALA ALA VAL ASP ALA ALA ASN ALA ASP THR ASP ILE SEQRES 5 A 260 SER VAL VAL ILE LEU THR GLY ALA GLY ARG PHE PHE SER SEQRES 6 A 260 ALA GLY GLY ASN VAL ARG ASP MET ARG ASP ARG THR GLY SEQRES 7 A 260 VAL PHE GLY LEU GLY PRO LEU ASP GLN ARG HIS GLY TYR SEQRES 8 A 260 SER SER GLY ILE GLN ARG VAL PRO ARG ALA LEU GLN ARG SEQRES 9 A 260 CYS GLU VAL PRO VAL ILE ALA ALA VAL ASN GLY ALA ALA SEQRES 10 A 260 ILE GLY ALA GLY CYS ASP LEU ALA VAL MET CYS ASP LEU SEQRES 11 A 260 ARG ILE ALA ALA GLU SER ALA PHE PHE ALA GLU SER PHE SEQRES 12 A 260 VAL GLN LEU GLY LEU ILE PRO GLY ASP GLY GLY THR TRP SEQRES 13 A 260 PHE LEU PRO ARG ALA VAL GLY TRP ALA ARG ALA ALA GLU SEQRES 14 A 260 MET THR LEU THR GLY ASP ARG VAL ASP ALA ALA THR ALA SEQRES 15 A 260 LEU SER TRP GLY LEU VAL ASN GLU VAL LEU SER ASP ASP SEQRES 16 A 260 GLU LEU LEU PRO ALA ALA HIS ARG LEU ALA GLU ARG ILE SEQRES 17 A 260 ALA LYS ASN PRO ALA PRO ALA VAL ARG MET ALA LYS ARG SEQRES 18 A 260 LEU LEU LEU GLU SER ARG THR ALA SER LEU ASP SER THR SEQRES 19 A 260 LEU ALA LEU ALA ALA ALA LEU GLN PRO LEU ALA HIS GLN SEQRES 20 A 260 ASP PRO GLU HIS HIS ARG ARG VAL ALA GLU LEU THR ARG SEQRES 1 B 260 GLY SER MET VAL THR ALA PRO LEU ARG ILE ASP ARG ALA SEQRES 2 B 260 GLY ARG VAL GLN THR TRP THR ILE ASP VAL PRO ASP ALA SEQRES 3 B 260 ALA ASN ALA ILE THR GLY SER ASP PHE ILE ASP ALA PHE SEQRES 4 B 260 ASP ALA ALA VAL ASP ALA ALA ASN ALA ASP THR ASP ILE SEQRES 5 B 260 SER VAL VAL ILE LEU THR GLY ALA GLY ARG PHE PHE SER SEQRES 6 B 260 ALA GLY GLY ASN VAL ARG ASP MET ARG ASP ARG THR GLY SEQRES 7 B 260 VAL PHE GLY LEU GLY PRO LEU ASP GLN ARG HIS GLY TYR SEQRES 8 B 260 SER SER GLY ILE GLN ARG VAL PRO ARG ALA LEU GLN ARG SEQRES 9 B 260 CYS GLU VAL PRO VAL ILE ALA ALA VAL ASN GLY ALA ALA SEQRES 10 B 260 ILE GLY ALA GLY CYS ASP LEU ALA VAL MET CYS ASP LEU SEQRES 11 B 260 ARG ILE ALA ALA GLU SER ALA PHE PHE ALA GLU SER PHE SEQRES 12 B 260 VAL GLN LEU GLY LEU ILE PRO GLY ASP GLY GLY THR TRP SEQRES 13 B 260 PHE LEU PRO ARG ALA VAL GLY TRP ALA ARG ALA ALA GLU SEQRES 14 B 260 MET THR LEU THR GLY ASP ARG VAL ASP ALA ALA THR ALA SEQRES 15 B 260 LEU SER TRP GLY LEU VAL ASN GLU VAL LEU SER ASP ASP SEQRES 16 B 260 GLU LEU LEU PRO ALA ALA HIS ARG LEU ALA GLU ARG ILE SEQRES 17 B 260 ALA LYS ASN PRO ALA PRO ALA VAL ARG MET ALA LYS ARG SEQRES 18 B 260 LEU LEU LEU GLU SER ARG THR ALA SER LEU ASP SER THR SEQRES 19 B 260 LEU ALA LEU ALA ALA ALA LEU GLN PRO LEU ALA HIS GLN SEQRES 20 B 260 ASP PRO GLU HIS HIS ARG ARG VAL ALA GLU LEU THR ARG HET EDO A 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *253(H2 O) HELIX 1 AA1 VAL A 21 ALA A 25 5 5 HELIX 2 AA2 GLY A 30 ASP A 47 1 18 HELIX 3 AA3 SER A 91 ILE A 93 5 3 HELIX 4 AA4 GLN A 94 CYS A 103 1 10 HELIX 5 AA5 GLY A 117 CYS A 126 1 10 HELIX 6 AA6 GLU A 139 GLY A 145 5 7 HELIX 7 AA7 GLY A 151 GLY A 161 1 11 HELIX 8 AA8 GLY A 161 GLY A 172 1 12 HELIX 9 AA9 ALA A 177 TRP A 183 1 7 HELIX 10 AB1 SER A 191 ASP A 193 5 3 HELIX 11 AB2 GLU A 194 LYS A 208 1 15 HELIX 12 AB3 PRO A 210 ALA A 227 1 18 HELIX 13 AB4 SER A 228 GLN A 240 1 13 HELIX 14 AB5 VAL B 21 ALA B 25 5 5 HELIX 15 AB6 GLY B 30 ASP B 47 1 18 HELIX 16 AB7 SER B 91 ILE B 93 5 3 HELIX 17 AB8 GLN B 94 CYS B 103 1 10 HELIX 18 AB9 GLY B 117 CYS B 126 1 10 HELIX 19 AC1 GLU B 139 GLY B 145 5 7 HELIX 20 AC2 GLY B 151 GLY B 161 1 11 HELIX 21 AC3 GLY B 161 GLY B 172 1 12 HELIX 22 AC4 ALA B 177 TRP B 183 1 7 HELIX 23 AC5 SER B 191 ASP B 193 5 3 HELIX 24 AC6 GLU B 194 LYS B 208 1 15 HELIX 25 AC7 PRO B 210 ARG B 225 1 16 HELIX 26 AC8 SER B 228 GLN B 240 1 13 SHEET 1 AA1 6 LEU A 6 ALA A 11 0 SHEET 2 AA1 6 VAL A 14 ILE A 19 -1 O VAL A 14 N ALA A 11 SHEET 3 AA1 6 VAL A 52 GLY A 57 1 O ILE A 54 N TRP A 17 SHEET 4 AA1 6 VAL A 107 VAL A 111 1 O ILE A 108 N VAL A 53 SHEET 5 AA1 6 LEU A 128 ALA A 132 1 O LEU A 128 N ALA A 109 SHEET 6 AA1 6 VAL A 189 LEU A 190 1 O LEU A 190 N ALA A 131 SHEET 1 AA2 4 PHE A 61 SER A 63 0 SHEET 2 AA2 4 ALA A 114 ILE A 116 1 O ILE A 116 N SER A 63 SHEET 3 AA2 4 PHE A 136 ALA A 138 1 O PHE A 136 N ALA A 115 SHEET 4 AA2 4 VAL A 175 ASP A 176 -1 O VAL A 175 N PHE A 137 SHEET 1 AA3 6 LEU B 6 ALA B 11 0 SHEET 2 AA3 6 VAL B 14 ILE B 19 -1 O VAL B 14 N ALA B 11 SHEET 3 AA3 6 VAL B 52 GLY B 57 1 O ILE B 54 N TRP B 17 SHEET 4 AA3 6 VAL B 107 VAL B 111 1 O ILE B 108 N LEU B 55 SHEET 5 AA3 6 LEU B 128 ALA B 132 1 O LEU B 128 N ALA B 109 SHEET 6 AA3 6 VAL B 189 LEU B 190 1 O LEU B 190 N ALA B 131 SHEET 1 AA4 4 PHE B 61 SER B 63 0 SHEET 2 AA4 4 ALA B 114 ILE B 116 1 O ILE B 116 N SER B 63 SHEET 3 AA4 4 PHE B 136 ALA B 138 1 O PHE B 136 N ALA B 115 SHEET 4 AA4 4 VAL B 175 ASP B 176 -1 O VAL B 175 N PHE B 137 SITE 1 AC1 4 PRO A 157 ARG A 158 TRP A 162 ARG A 225 CRYST1 104.130 104.130 83.750 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009603 0.005545 0.000000 0.00000 SCALE2 0.000000 0.011089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011940 0.00000 MTRIX1 1 0.855037 0.517961 -0.025078 -7.10230 1 MTRIX2 1 0.517935 -0.855382 -0.008043 29.02650 1 MTRIX3 1 -0.025618 -0.006111 -0.999653 42.54057 1