HEADER HYDROLASE/HYDROLASE INHIBITOR 03-APR-21 7MDC TITLE FULL-LENGTH WILDTYPE CLBP INHIBITED BY HEXANOYL-D-ASPARAGINE BORONIC TITLE 2 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CLBP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS COLIBACTIN PEPTIDASE, S12 PEPTIDASE, BORONIC ACID INHIBITOR, KEYWDS 2 HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.VELILLA,M.R.VOLPE,R.GAUDET REVDAT 5 16-OCT-24 7MDC 1 REMARK REVDAT 4 25-OCT-23 7MDC 1 REMARK REVDAT 3 15-FEB-23 7MDC 1 JRNL REVDAT 2 02-NOV-22 7MDC 1 JRNL REVDAT 1 28-SEP-22 7MDC 0 JRNL AUTH M.R.VOLPE,J.A.VELILLA,M.DANIEL-IVAD,J.J.YAO,A.STORNETTA, JRNL AUTH 2 P.W.VILLALTA,H.C.HUANG,D.A.BACHOVCHIN,S.BALBO,R.GAUDET, JRNL AUTH 3 E.P.BALSKUS JRNL TITL A SMALL MOLECULE INHIBITOR PREVENTS GUT BACTERIAL GENOTOXIN JRNL TITL 2 PRODUCTION. JRNL REF NAT.CHEM.BIOL. V. 19 159 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 36253549 JRNL DOI 10.1038/S41589-022-01147-8 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5800 - 5.6100 1.00 2806 149 0.2001 0.2398 REMARK 3 2 5.6100 - 4.4600 1.00 2647 137 0.1683 0.2031 REMARK 3 3 4.4600 - 3.8900 1.00 2611 139 0.1469 0.2017 REMARK 3 4 3.8900 - 3.5400 1.00 2585 135 0.1632 0.1853 REMARK 3 5 3.5400 - 3.2800 1.00 2572 136 0.1885 0.2591 REMARK 3 6 3.2800 - 3.0900 1.00 2558 134 0.2180 0.2783 REMARK 3 7 3.0900 - 2.9400 1.00 2555 134 0.2353 0.2785 REMARK 3 8 2.9400 - 2.8100 1.00 2546 135 0.2466 0.3008 REMARK 3 9 2.8100 - 2.7000 1.00 2534 132 0.2989 0.3650 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3482 REMARK 3 ANGLE : 0.922 4714 REMARK 3 CHIRALITY : 0.052 540 REMARK 3 PLANARITY : 0.008 596 REMARK 3 DIHEDRAL : 21.065 1238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1803 33.7687 49.1673 REMARK 3 T TENSOR REMARK 3 T11: 0.3273 T22: 0.3882 REMARK 3 T33: 0.5654 T12: 0.0307 REMARK 3 T13: 0.0349 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 2.6513 L22: 2.4191 REMARK 3 L33: 2.5156 L12: -0.2407 REMARK 3 L13: 0.2410 L23: -0.4852 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.0796 S13: 0.1682 REMARK 3 S21: 0.0589 S22: -0.1393 S23: -0.2848 REMARK 3 S31: -0.0436 S32: 0.2007 S33: 0.0098 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 151) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0762 24.9186 45.1498 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.3612 REMARK 3 T33: 0.6680 T12: 0.0123 REMARK 3 T13: 0.0114 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.7339 L22: 1.1689 REMARK 3 L33: 1.2020 L12: 0.1379 REMARK 3 L13: 0.1897 L23: -0.2973 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0350 S13: 0.1448 REMARK 3 S21: -0.1379 S22: -0.0270 S23: 0.3024 REMARK 3 S31: 0.0206 S32: -0.2475 S33: -0.0158 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7463 26.0080 57.3028 REMARK 3 T TENSOR REMARK 3 T11: 0.3862 T22: 0.4361 REMARK 3 T33: 0.6225 T12: -0.0148 REMARK 3 T13: 0.0205 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 3.5957 L22: 0.7020 REMARK 3 L33: 2.1844 L12: -0.2232 REMARK 3 L13: 0.6144 L23: 0.6721 REMARK 3 S TENSOR REMARK 3 S11: -0.1418 S12: -0.3967 S13: -0.1890 REMARK 3 S21: 0.5763 S22: 0.2093 S23: 0.4508 REMARK 3 S31: 0.1750 S32: -0.1682 S33: -0.0513 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5515 21.1505 49.2362 REMARK 3 T TENSOR REMARK 3 T11: 0.3225 T22: 0.3268 REMARK 3 T33: 0.6768 T12: 0.0099 REMARK 3 T13: 0.0305 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.9129 L22: 1.2223 REMARK 3 L33: 1.2104 L12: -0.4336 REMARK 3 L13: 0.5127 L23: 0.1989 REMARK 3 S TENSOR REMARK 3 S11: 0.0559 S12: -0.0849 S13: -0.3810 REMARK 3 S21: 0.0182 S22: -0.0076 S23: 0.0427 REMARK 3 S31: 0.2884 S32: 0.0789 S33: -0.0798 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0648 32.2945 33.9445 REMARK 3 T TENSOR REMARK 3 T11: 0.3463 T22: 0.4449 REMARK 3 T33: 0.6419 T12: -0.0161 REMARK 3 T13: -0.0345 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 2.0477 L22: 2.0930 REMARK 3 L33: 1.0710 L12: 0.1508 REMARK 3 L13: 0.1691 L23: 0.6994 REMARK 3 S TENSOR REMARK 3 S11: 0.2768 S12: 0.7357 S13: 0.1398 REMARK 3 S21: -0.5863 S22: -0.1909 S23: 0.0588 REMARK 3 S31: -0.3281 S32: -0.0882 S33: 0.0347 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5574 40.1174 46.0392 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.3590 REMARK 3 T33: 0.5191 T12: -0.0032 REMARK 3 T13: 0.0257 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 1.2129 L22: 1.1454 REMARK 3 L33: 0.9067 L12: 0.0548 REMARK 3 L13: 0.3719 L23: -0.9285 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.1196 S13: 0.4989 REMARK 3 S21: 0.1100 S22: 0.0359 S23: 0.1095 REMARK 3 S31: -0.2488 S32: 0.0494 S33: 0.0319 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 382 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8155 40.7294 82.8278 REMARK 3 T TENSOR REMARK 3 T11: 0.7815 T22: 0.6708 REMARK 3 T33: 0.6147 T12: -0.1537 REMARK 3 T13: -0.0136 T23: -0.1341 REMARK 3 L TENSOR REMARK 3 L11: 1.8423 L22: 1.5728 REMARK 3 L33: 1.8562 L12: 0.1426 REMARK 3 L13: 0.9312 L23: -0.1844 REMARK 3 S TENSOR REMARK 3 S11: 0.1337 S12: -0.3381 S13: 0.4350 REMARK 3 S21: 0.7044 S22: -0.3269 S23: 0.1892 REMARK 3 S31: -0.4287 S32: -0.1532 S33: 0.0349 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7054 30.4506 89.0722 REMARK 3 T TENSOR REMARK 3 T11: 0.9064 T22: 1.2444 REMARK 3 T33: 0.5574 T12: -0.1406 REMARK 3 T13: 0.2808 T23: -0.2583 REMARK 3 L TENSOR REMARK 3 L11: 2.0441 L22: 1.8472 REMARK 3 L33: 0.6563 L12: 1.6104 REMARK 3 L13: 1.1497 L23: 0.8230 REMARK 3 S TENSOR REMARK 3 S11: 0.7660 S12: -1.3054 S13: 0.1703 REMARK 3 S21: 0.7392 S22: -0.4148 S23: 0.2985 REMARK 3 S31: 0.5532 S32: -0.5768 S33: 0.3609 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 455 THROUGH 491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5725 31.9226 80.8715 REMARK 3 T TENSOR REMARK 3 T11: 0.5999 T22: 0.8672 REMARK 3 T33: 0.6256 T12: -0.0399 REMARK 3 T13: 0.0111 T23: 0.2033 REMARK 3 L TENSOR REMARK 3 L11: 1.4696 L22: 1.5820 REMARK 3 L33: 3.4205 L12: -0.1671 REMARK 3 L13: -0.0018 L23: 0.1795 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.6547 S13: -0.5450 REMARK 3 S21: 0.4607 S22: -0.1507 S23: 0.3193 REMARK 3 S31: 0.5339 S32: -0.3694 S33: 0.0651 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2-7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.14.5-G19190E3B9-RELEASE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.25750 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 1.88700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7MDE REMARK 200 REMARK 200 REMARK: SQUARE PLATES GROWN IN A SPONGE PHASE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT COMPOSITION: 1 PART 0.1M REMARK 280 IMIDAZOLE PH 7.8, 10% (V/V) PEG 400, 150 MM LI2SO4, 11 MM (S)-N- REMARK 280 (3-AMINO-3-OXO-1-(4,4,5,5-TETRAMETHYL-1,3,2-DIOXABOROLAN-2-YL) REMARK 280 PROPYL)HEXANAMIDE PLUS 3.5 PARTS 0.1M TRIS PH 7.2, 25%(V/V) REMARK 280 PEG400, 200 MM LI2SO4, LIPIDIC CUBIC PHASE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.35900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.35900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.69100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.35900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.35900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.69100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.35900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.35900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.69100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.35900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.35900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.69100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 31 REMARK 465 GLU A 32 REMARK 465 HIS A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 VAL A 412 REMARK 465 TYR A 413 REMARK 465 ARG A 414 REMARK 465 ALA A 415 REMARK 465 THR A 416 REMARK 465 ALA A 417 REMARK 465 HIS A 418 REMARK 465 GLY A 419 REMARK 465 PRO A 420 REMARK 465 GLY A 421 REMARK 465 LYS A 422 REMARK 465 GLN A 423 REMARK 465 GLN A 424 REMARK 465 ARG A 425 REMARK 465 LEU A 426 REMARK 465 ARG A 427 REMARK 465 LEU A 428 REMARK 465 ARG A 429 REMARK 465 LYS A 492 REMARK 465 ARG A 493 REMARK 465 ILE A 494 REMARK 465 LEU A 495 REMARK 465 LEU A 496 REMARK 465 HIS A 497 REMARK 465 ASN A 498 REMARK 465 LYS A 499 REMARK 465 GLU A 500 REMARK 465 TRP A 501 REMARK 465 ASP A 502 REMARK 465 ASP A 503 REMARK 465 GLU A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 VAL A 404 CG1 CG2 REMARK 470 VAL A 406 CG1 CG2 REMARK 470 PHE A 410 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 411 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 430 CG1 CG2 REMARK 470 ARG A 431 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 432 CG OD1 OD2 REMARK 470 TYR A 433 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 434 CG1 CG2 CD1 REMARK 470 ILE A 435 CG1 CG2 CD1 REMARK 470 GLN A 490 CG CD OE1 NE2 REMARK 470 ILE A 491 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 124 79.54 -116.55 REMARK 500 ASN A 173 33.93 71.87 REMARK 500 ASP A 229 30.47 -93.57 REMARK 500 ASN A 234 -0.26 79.19 REMARK 500 ALA A 261 -13.96 -142.65 REMARK 500 ASP A 300 33.82 -94.22 REMARK 500 ALA A 312 -145.54 -117.67 REMARK 500 ASN A 333 11.07 -144.58 REMARK 500 ASN A 353 38.99 -94.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 601 REMARK 610 2PE A 603 REMARK 610 2PE A 604 REMARK 610 2PE A 605 REMARK 610 2PE A 606 REMARK 610 2PE A 607 REMARK 610 97N A 608 REMARK 610 2PE A 611 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MDE RELATED DB: PDB REMARK 900 FULL-LENGTH S95A CLBP REMARK 900 RELATED ID: 7MDF RELATED DB: PDB REMARK 900 FULL-LENGTH S95A CLBP BOUND TO N-ACYL-D-ASPARAGINE ANALOG REMARK 900 RELATED ID: 7UL6 RELATED DB: PDB REMARK 900 CRYOEM STRUCTURE OF FULL-LENGTH DIMERIC CLBP DBREF 7MDC A 31 504 UNP Q0P7K6 Q0P7K6_ECOLX 31 504 SEQADV 7MDC HIS A 505 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDC HIS A 506 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDC HIS A 507 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDC HIS A 508 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDC HIS A 509 UNP Q0P7K6 EXPRESSION TAG SEQADV 7MDC HIS A 510 UNP Q0P7K6 EXPRESSION TAG SEQRES 1 A 480 GLN GLU HIS GLU PRO ILE GLY ALA GLN ASP GLU ARG LEU SEQRES 2 A 480 SER THR LEU ILE HIS GLN ARG MET GLN GLU ALA LYS VAL SEQRES 3 A 480 PRO ALA LEU SER VAL SER VAL THR ILE LYS GLY VAL ARG SEQRES 4 A 480 GLN ARG PHE VAL TYR GLY VAL ALA ASP VAL ALA SER GLN SEQRES 5 A 480 LYS ALA ASN THR LEU ASP THR VAL TYR GLU LEU GLY SER SEQRES 6 A 480 MET SER LYS ALA PHE THR GLY LEU VAL VAL GLN ILE LEU SEQRES 7 A 480 ILE GLN GLU GLY ARG LEU ARG GLN GLY ASP ASP ILE ILE SEQRES 8 A 480 THR TYR LEU PRO GLU MET ARG LEU ASN TYR GLN GLY LYS SEQRES 9 A 480 PRO ALA SER LEU THR VAL ALA ASP PHE LEU TYR HIS THR SEQRES 10 A 480 SER GLY LEU PRO PHE SER THR LEU ALA ARG LEU GLU ASN SEQRES 11 A 480 PRO MET PRO GLY SER ALA VAL ALA GLN GLN LEU ARG ASN SEQRES 12 A 480 GLU ASN LEU LEU PHE ALA PRO GLY ALA LYS PHE SER TYR SEQRES 13 A 480 ALA SER ALA ASN TYR ASP VAL LEU GLY ALA VAL ILE GLU SEQRES 14 A 480 ASN VAL THR GLY LYS THR PHE THR GLU VAL ILE ALA GLU SEQRES 15 A 480 ARG LEU THR GLN PRO LEU GLY MET SER ALA THR VAL ALA SEQRES 16 A 480 VAL LYS GLY ASP GLU ILE ILE VAL ASN LYS ALA SER GLY SEQRES 17 A 480 TYR LYS LEU GLY PHE GLY LYS PRO VAL LEU PHE HIS ALA SEQRES 18 A 480 PRO LEU ALA ARG ASN HIS VAL PRO ALA ALA TYR ILE HIS SEQRES 19 A 480 SER THR LEU PRO ASP MET GLU ILE TRP ILE ASP ALA TRP SEQRES 20 A 480 LEU HIS ARG LYS ALA LEU PRO ALA THR LEU ARG GLU ALA SEQRES 21 A 480 MET SER ASN SER TRP ARG GLY ASN SER ASP VAL PRO LEU SEQRES 22 A 480 ALA ALA ASP ASN ARG ILE LEU TYR ALA SER GLY TRP PHE SEQRES 23 A 480 ILE ASP GLN ASN GLN GLY PRO TYR ILE SER HIS GLY GLY SEQRES 24 A 480 GLN ASN PRO ASN PHE SER SER CYS ILE ALA LEU ARG PRO SEQRES 25 A 480 ASP GLN GLN ILE GLY ILE VAL ALA LEU ALA ASN MET ASN SEQRES 26 A 480 SER ASN LEU ILE LEU GLN LEU CYS ALA ASP ILE ASP ASN SEQRES 27 A 480 TYR LEU ARG ILE GLY LYS TYR ALA ASP GLY ALA GLY ASP SEQRES 28 A 480 ALA ILE THR ALA THR ASP THR LEU PHE VAL TYR LEU THR SEQRES 29 A 480 LEU LEU LEU CYS PHE TRP GLY ALA VAL VAL VAL VAL ARG SEQRES 30 A 480 GLY ALA PHE ARG VAL TYR ARG ALA THR ALA HIS GLY PRO SEQRES 31 A 480 GLY LYS GLN GLN ARG LEU ARG LEU ARG VAL ARG ASP TYR SEQRES 32 A 480 ILE ILE ALA LEU ALA VAL PRO GLY LEU VAL ALA ALA MET SEQRES 33 A 480 LEU TYR VAL ALA PRO GLY ILE LEU SER PRO GLY LEU ASP SEQRES 34 A 480 TRP ARG PHE ILE LEU VAL TRP GLY PRO SER SER VAL LEU SEQRES 35 A 480 ALA ILE PRO PHE GLY ILE ILE LEU LEU ALA PHE VAL LEU SEQRES 36 A 480 THR LEU ASN HIS GLN ILE LYS ARG ILE LEU LEU HIS ASN SEQRES 37 A 480 LYS GLU TRP ASP ASP GLU HIS HIS HIS HIS HIS HIS HET 2PE A 601 14 HET DMS A 602 4 HET 2PE A 603 9 HET 2PE A 604 11 HET 2PE A 605 12 HET 2PE A 606 8 HET 2PE A 607 6 HET 97N A 608 13 HET YX7 A 609 16 HET SO4 A 610 5 HET 2PE A 611 7 HET CL A 612 1 HET CL A 613 1 HET CL A 614 1 HETNAM 2PE NONAETHYLENE GLYCOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM 97N (2S)-2,3-DIHYDROXYPROPYL (9Z)-HEXADEC-9-ENOATE HETNAM YX7 [(1S)-3-AMINO-1-(HEXANOYLAMINO)-3-OXOPROPYL]BORONIC HETNAM 2 YX7 ACID HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 2PE 7(C18 H38 O10) FORMUL 3 DMS C2 H6 O S FORMUL 9 97N C19 H36 O4 FORMUL 10 YX7 C9 H19 B N2 O4 FORMUL 11 SO4 O4 S 2- FORMUL 13 CL 3(CL 1-) FORMUL 16 HOH *212(H2 O) HELIX 1 AA1 ASP A 40 LYS A 55 1 16 HELIX 2 AA2 GLY A 94 MET A 96 5 3 HELIX 3 AA3 SER A 97 GLU A 111 1 15 HELIX 4 AA4 ASP A 119 TYR A 123 5 5 HELIX 5 AA5 THR A 139 TYR A 145 1 7 HELIX 6 AA6 SER A 153 ASN A 160 1 8 HELIX 7 AA7 ALA A 166 ARG A 172 1 7 HELIX 8 AA8 ALA A 189 GLY A 203 1 15 HELIX 9 AA9 THR A 205 LEU A 214 1 10 HELIX 10 AB1 LEU A 214 GLY A 219 1 6 HELIX 11 AB2 ALA A 254 ASN A 256 5 3 HELIX 12 AB3 HIS A 257 TYR A 262 1 6 HELIX 13 AB4 THR A 266 HIS A 279 1 14 HELIX 14 AB5 PRO A 284 TRP A 295 1 12 HELIX 15 AB6 PRO A 342 GLN A 344 5 3 HELIX 16 AB7 SER A 356 GLN A 361 1 6 HELIX 17 AB8 GLN A 361 GLY A 373 1 13 HELIX 18 AB9 ASP A 381 ARG A 411 1 31 HELIX 19 AC1 ARG A 431 ALA A 450 1 20 HELIX 20 AC2 ALA A 450 SER A 455 1 6 HELIX 21 AC3 ASP A 459 GLY A 467 1 9 HELIX 22 AC4 LEU A 472 ILE A 491 1 20 SHEET 1 AA1 8 LYS A 83 ALA A 84 0 SHEET 2 AA1 8 VAL A 68 ASP A 78 -1 N ASP A 78 O LYS A 83 SHEET 3 AA1 8 ALA A 58 ILE A 65 -1 N VAL A 63 O GLN A 70 SHEET 4 AA1 8 ILE A 346 ALA A 352 -1 O LEU A 351 N SER A 60 SHEET 5 AA1 8 SER A 335 ARG A 341 -1 N CYS A 337 O ALA A 350 SHEET 6 AA1 8 TYR A 324 GLN A 330 -1 N ILE A 325 O LEU A 340 SHEET 7 AA1 8 PHE A 316 ASP A 318 -1 N PHE A 316 O SER A 326 SHEET 8 AA1 8 LEU A 310 TYR A 311 -1 N LEU A 310 O ILE A 317 SHEET 1 AA2 3 TYR A 91 GLU A 92 0 SHEET 2 AA2 3 ILE A 263 SER A 265 -1 O SER A 265 N TYR A 91 SHEET 3 AA2 3 VAL A 224 ALA A 225 -1 N VAL A 224 O HIS A 264 SHEET 1 AA3 3 LYS A 134 PRO A 135 0 SHEET 2 AA3 3 LEU A 129 TYR A 131 -1 N TYR A 131 O LYS A 134 SHEET 3 AA3 3 GLU A 174 ASN A 175 1 O GLU A 174 N ASN A 130 SHEET 1 AA4 2 TYR A 239 GLY A 242 0 SHEET 2 AA4 2 LYS A 245 LEU A 248 -1 O LYS A 245 N GLY A 242 SSBOND 1 CYS A 337 CYS A 363 1555 1555 2.08 LINK OG SER A 95 B13 YX7 A 609 1555 1555 1.44 CISPEP 1 GLY A 322 PRO A 323 0 3.95 CRYST1 96.718 96.718 183.382 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005453 0.00000