HEADER HYDROLASE/IMMUNE SYSTEM 05-APR-21 7MDP TITLE KRAS G12C IN COMPLEX WITH G-2897 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2B OF GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: IGG HEAVY CHAIN; COMPND 10 CHAIN: H; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: IGG LIGHT CHAIN; COMPND 14 CHAIN: I; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KRAS, GTPASE, HYDROLASE, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.OH,Y.FRANK,W.WANG REVDAT 4 30-OCT-24 7MDP 1 REMARK REVDAT 3 18-OCT-23 7MDP 1 REMARK REVDAT 2 01-JUN-22 7MDP 1 JRNL REVDAT 1 16-MAR-22 7MDP 0 JRNL AUTH C.W.DAVIES,A.J.OH,R.MROUE,M.STEFFEK,J.M.BRUNING,Y.XIAO, JRNL AUTH 2 S.FENG,S.JAYAKAR,E.CHAN,V.ARUMUGAM,S.C.URIBE,J.DRUMMOND, JRNL AUTH 3 A.FROMMLET,C.LU,Y.FRANKE,M.MERCHANT,H.KOEPPEN,J.G.QUINN, JRNL AUTH 4 S.MALHOTRA,S.DO,L.GAZZARD,H.E.PURKEY,J.RUDOLPH, JRNL AUTH 5 M.M.MULVIHILL,J.T.KOERBER,W.WANG,M.EVANGELISTA JRNL TITL CONFORMATION-LOCKING ANTIBODIES FOR THE DISCOVERY AND JRNL TITL 2 CHARACTERIZATION OF KRAS INHIBITORS. JRNL REF NAT.BIOTECHNOL. V. 40 769 2022 JRNL REFN ISSN 1087-0156 JRNL PMID 34992247 JRNL DOI 10.1038/S41587-021-01126-9 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829_FINAL REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 57.9 REMARK 3 NUMBER OF REFLECTIONS : 75922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9020 - 5.8742 0.91 4226 201 0.1455 0.1690 REMARK 3 2 5.8742 - 4.6653 0.93 4309 224 0.1293 0.1659 REMARK 3 3 4.6653 - 4.0763 0.94 4291 243 0.1231 0.1486 REMARK 3 4 4.0763 - 3.7040 0.92 4244 197 0.1537 0.1967 REMARK 3 5 3.7040 - 3.4387 0.92 4223 212 0.1819 0.2302 REMARK 3 6 3.4387 - 3.2361 0.92 4231 246 0.2089 0.2583 REMARK 3 7 3.2361 - 3.0741 0.96 4428 255 0.2307 0.2870 REMARK 3 8 3.0741 - 2.9403 0.96 4406 229 0.2463 0.3210 REMARK 3 9 2.9403 - 2.8272 0.94 4297 244 0.2487 0.2625 REMARK 3 10 2.8272 - 2.7296 0.87 4042 216 0.2726 0.2858 REMARK 3 11 2.7296 - 2.6443 0.80 3641 204 0.2825 0.2856 REMARK 3 12 2.6443 - 2.5687 0.73 3302 207 0.2803 0.2851 REMARK 3 13 2.5687 - 2.5011 0.65 2981 174 0.2810 0.2852 REMARK 3 14 2.5011 - 2.4401 0.60 2790 117 0.2866 0.2751 REMARK 3 15 2.4401 - 2.3846 0.56 2602 126 0.2817 0.3209 REMARK 3 16 2.3846 - 2.3339 0.50 2308 113 0.2872 0.3020 REMARK 3 17 2.3339 - 2.2872 0.45 2054 105 0.3048 0.3577 REMARK 3 18 2.2872 - 2.2441 0.41 1904 108 0.3402 0.4057 REMARK 3 19 2.2441 - 2.2040 0.35 1605 112 0.3321 0.3528 REMARK 3 20 2.2040 - 2.1666 0.31 1402 76 0.2948 0.2902 REMARK 3 21 2.1666 - 2.1317 0.29 1335 67 0.3055 0.3262 REMARK 3 22 2.1317 - 2.0989 0.24 1091 44 0.3222 0.2542 REMARK 3 23 2.0989 - 2.0680 0.20 921 44 0.3283 0.2984 REMARK 3 24 2.0680 - 2.0389 0.13 613 29 0.3111 0.2513 REMARK 3 25 2.0389 - 2.0114 0.10 456 24 0.3329 0.3474 REMARK 3 26 2.0114 - 1.9852 0.06 291 8 0.3362 0.5600 REMARK 3 27 1.9852 - 1.9604 0.02 96 8 0.3758 0.3826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4823 REMARK 3 ANGLE : 0.849 6539 REMARK 3 CHIRALITY : 0.051 726 REMARK 3 PLANARITY : 0.010 822 REMARK 3 DIHEDRAL : 16.933 2861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 1:167 OR RESID 304:307 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.624 38.695 46.948 REMARK 3 T TENSOR REMARK 3 T11: 0.9088 T22: 1.2581 REMARK 3 T33: 0.3434 T12: 0.1305 REMARK 3 T13: 0.0144 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 1.4310 L22: 0.7960 REMARK 3 L33: 1.6694 L12: 0.2057 REMARK 3 L13: -0.0511 L23: 0.1593 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: -0.5735 S13: -0.0927 REMARK 3 S21: 0.1493 S22: -0.0190 S23: -0.4062 REMARK 3 S31: 0.4989 S32: 0.9241 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN I AND RESID 2:110 ) OR ( CHAIN H AND RESID REMARK 3 1:110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.264 31.977 14.061 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.3013 REMARK 3 T33: 0.2661 T12: 0.0265 REMARK 3 T13: 0.0008 T23: 0.0935 REMARK 3 L TENSOR REMARK 3 L11: 1.8746 L22: 1.7992 REMARK 3 L33: 1.0744 L12: 0.0018 REMARK 3 L13: 0.1211 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: -0.4804 S13: -0.3308 REMARK 3 S21: 0.3404 S22: 0.1192 S23: -0.0033 REMARK 3 S31: 0.0339 S32: 0.0285 S33: 0.0068 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN I AND RESID 111:209 ) OR ( CHAIN H AND RESID REMARK 3 111:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.206 25.974 -1.689 REMARK 3 T TENSOR REMARK 3 T11: 0.2018 T22: 0.1846 REMARK 3 T33: 0.2084 T12: 0.0181 REMARK 3 T13: -0.0145 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 2.1458 L22: 4.4791 REMARK 3 L33: 0.8392 L12: 0.5182 REMARK 3 L13: 0.0153 L23: 0.7304 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: 0.0202 S13: -0.0632 REMARK 3 S21: -0.1594 S22: -0.2015 S23: 0.0841 REMARK 3 S31: 0.0433 S32: -0.0684 S33: -0.0041 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 37.902 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6XC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 21 % PEG 4K AND 0.2 REMARK 280 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.68250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.45950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.68250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.45950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH I 468 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 THR I 210 REMARK 465 GLU I 211 REMARK 465 CYS I 212 REMARK 465 SER I 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 16 O2B GDP A 202 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO H 15 C - N - CD ANGL. DEV. = -16.9 DEGREES REMARK 500 PRO I 142 C - N - CD ANGL. DEV. = -19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 107.83 -41.62 REMARK 500 ALA A 59 -38.73 -153.41 REMARK 500 GLU A 62 59.89 -67.53 REMARK 500 PRO H 14 176.87 -58.66 REMARK 500 PRO H 15 -29.01 42.46 REMARK 500 LYS H 43 -165.56 -110.44 REMARK 500 SER H 130 31.09 -77.53 REMARK 500 ASP H 144 65.02 60.83 REMARK 500 THR H 191 -62.42 -95.63 REMARK 500 ASN I 27B -85.35 -110.47 REMARK 500 ASN I 51 -45.71 67.29 REMARK 500 ASN I 52 16.15 -147.82 REMARK 500 PRO I 142 116.66 36.33 REMARK 500 ASP I 152 -109.61 50.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO H 14 PRO H 15 -131.06 REMARK 500 TYR I 141 PRO I 142 -114.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P15 H 304 REMARK 610 P15 H 306 REMARK 610 P15 H 308 REMARK 610 P15 I 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 202 O1B 96.6 REMARK 620 3 HOH A 304 O 80.8 85.7 REMARK 620 4 HOH A 305 O 95.4 109.8 164.4 REMARK 620 5 HOH A 306 O 159.7 86.9 79.5 102.2 REMARK 620 6 HOH A 307 O 93.9 168.8 92.0 73.0 81.9 REMARK 620 N 1 2 3 4 5 DBREF 7MDP A 1 169 UNP P01116-2 RASK-2_HUMAN 1 169 DBREF 7MDP H 1 217 PDB 7MDP 7MDP 1 217 DBREF 7MDP I 2 213 PDB 7MDP 7MDP 2 213 SEQADV 7MDP CYS A 12 UNP P01116-2 GLY 12 ENGINEERED MUTATION SEQRES 1 A 169 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS GLY SEQRES 2 A 169 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 169 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 169 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 169 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 169 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 169 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 169 ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 169 ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 169 CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN ALA SEQRES 11 A 169 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE GLU SEQRES 12 A 169 THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA PHE SEQRES 13 A 169 TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU LYS SEQRES 1 H 226 GLU VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 226 PRO PRO GLY THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 H 226 GLY SER ILE SER SER SER ASN TRP TRP SER TRP VAL ARG SEQRES 4 H 226 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE SEQRES 5 H 226 TYR HIS SER GLY SER THR ASN TYR ASN PRO SER LEU LYS SEQRES 6 H 226 SER ARG VAL THR ILE SER VAL ASP LYS SER LYS ASN GLN SEQRES 7 H 226 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA ARG GLY SER SER SER TRP TYR SEQRES 9 H 226 ASP LEU GLY PRO PHE ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 226 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 226 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 226 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 226 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 226 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 226 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 226 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 226 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 226 PRO LYS SER CYS ASP SEQRES 1 I 215 SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR PRO SEQRES 2 I 215 GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SER SEQRES 3 I 215 ASN ILE GLY SER ASN TYR VAL TYR TRP TYR GLN GLN LEU SEQRES 4 I 215 PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ARG ASN ASN SEQRES 5 I 215 GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 6 I 215 LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU SEQRES 7 I 215 ARG SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP SEQRES 8 I 215 ASP GLU ARG LEU SER GLY TRP VAL PHE GLY GLY GLY THR SEQRES 9 I 215 LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER SEQRES 10 I 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 I 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 I 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 I 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 I 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 I 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 I 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 I 215 VAL ALA PRO THR GLU CYS SER HET Z07 A 201 14 HET GDP A 202 28 HET MG A 203 1 HET ACT A 204 4 HET CAD H 301 5 HET CAD H 302 5 HET CAD H 303 5 HET P15 H 304 12 HET EDO H 305 4 HET P15 H 306 12 HET ACT H 307 4 HET P15 H 308 12 HET EDO H 309 4 HET EDO I 301 4 HET EDO I 302 4 HET CAD I 303 5 HET DMS I 304 4 HET P15 I 305 11 HETNAM Z07 4-(TRIFLUOROMETHYL)-1,3-BENZOTHIAZOL-2-AMINE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM CAD CACODYLIC ACID HETNAM P15 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN CAD HYDROXYDIMETHYLARSINE OXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 Z07 C8 H5 F3 N2 S FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 MG MG 2+ FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 8 CAD 4(C2 H7 AS O2) FORMUL 11 P15 4(C13 H28 O7) FORMUL 12 EDO 4(C2 H6 O2) FORMUL 20 DMS C2 H6 O S FORMUL 22 HOH *143(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 ASP A 126 SER A 136 1 11 HELIX 5 AA5 GLY A 151 LYS A 165 1 15 HELIX 6 AA6 PRO H 61 LYS H 64 5 4 HELIX 7 AA7 LYS H 73 LYS H 75 5 3 HELIX 8 AA8 THR H 83 THR H 87 5 5 HELIX 9 AA9 SER H 156 ALA H 158 5 3 HELIX 10 AB1 SER H 187 GLY H 190 5 4 HELIX 11 AB2 LYS H 201 ASN H 204 5 4 HELIX 12 AB3 ARG I 79 GLU I 83 5 5 HELIX 13 AB4 SER I 122 ALA I 128 1 7 HELIX 14 AB5 THR I 182 SER I 188 1 7 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N THR A 2 O LEU A 52 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O GLY A 77 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N CYS A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 GLN H 3 SER H 7 0 SHEET 2 AA2 4 LEU H 18 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA2 4 GLN H 77 LEU H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AA2 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA3 6 LEU H 11 VAL H 12 0 SHEET 2 AA3 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 6 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 6 TRP H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA3 6 GLU H 46 ILE H 51 -1 O ILE H 51 N TRP H 35 SHEET 6 AA3 6 THR H 57 TYR H 59 -1 O ASN H 58 N GLU H 50 SHEET 1 AA4 4 LEU H 11 VAL H 12 0 SHEET 2 AA4 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA4 4 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA4 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA6 4 THR H 131 SER H 132 0 SHEET 2 AA6 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA6 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA6 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA7 3 THR H 151 TRP H 154 0 SHEET 2 AA7 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA7 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA8 5 SER I 9 GLY I 13 0 SHEET 2 AA8 5 THR I 102 VAL I 106 1 O THR I 105 N ALA I 11 SHEET 3 AA8 5 ASP I 85 ASP I 92 -1 N TYR I 86 O THR I 102 SHEET 4 AA8 5 VAL I 33 GLN I 38 -1 N GLN I 38 O ASP I 85 SHEET 5 AA8 5 LYS I 45 ILE I 48 -1 O LEU I 47 N TRP I 35 SHEET 1 AA9 4 SER I 9 GLY I 13 0 SHEET 2 AA9 4 THR I 102 VAL I 106 1 O THR I 105 N ALA I 11 SHEET 3 AA9 4 ASP I 85 ASP I 92 -1 N TYR I 86 O THR I 102 SHEET 4 AA9 4 GLY I 95B PHE I 98 -1 O GLY I 95B N ASP I 92 SHEET 1 AB1 3 VAL I 19 SER I 24 0 SHEET 2 AB1 3 SER I 70 ILE I 75 -1 O ILE I 75 N VAL I 19 SHEET 3 AB1 3 PHE I 62 SER I 67 -1 N SER I 63 O ALA I 74 SHEET 1 AB2 4 SER I 115 PHE I 119 0 SHEET 2 AB2 4 ALA I 131 PHE I 140 -1 O LEU I 136 N THR I 117 SHEET 3 AB2 4 TYR I 173 LEU I 181 -1 O LEU I 181 N ALA I 131 SHEET 4 AB2 4 VAL I 160 THR I 162 -1 N GLU I 161 O TYR I 178 SHEET 1 AB3 4 SER I 115 PHE I 119 0 SHEET 2 AB3 4 ALA I 131 PHE I 140 -1 O LEU I 136 N THR I 117 SHEET 3 AB3 4 TYR I 173 LEU I 181 -1 O LEU I 181 N ALA I 131 SHEET 4 AB3 4 SER I 166 LYS I 167 -1 N SER I 166 O ALA I 174 SHEET 1 AB4 4 SER I 154 VAL I 156 0 SHEET 2 AB4 4 THR I 146 ALA I 151 -1 N ALA I 151 O SER I 154 SHEET 3 AB4 4 TYR I 192 HIS I 198 -1 O GLN I 195 N ALA I 148 SHEET 4 AB4 4 SER I 201 VAL I 207 -1 O VAL I 203 N VAL I 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.15 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS I 23 CYS I 88 1555 1555 2.04 SSBOND 4 CYS I 135 CYS I 194 1555 1555 2.07 LINK OG SER A 17 MG MG A 203 1555 1555 2.07 LINK O1B GDP A 202 MG MG A 203 1555 1555 2.06 LINK MG MG A 203 O HOH A 304 1555 1555 2.05 LINK MG MG A 203 O HOH A 305 1555 1555 2.07 LINK MG MG A 203 O HOH A 306 1555 1555 2.04 LINK MG MG A 203 O HOH A 307 1555 1555 2.06 CISPEP 1 PHE H 146 PRO H 147 0 -4.52 CISPEP 2 GLU H 148 PRO H 149 0 0.29 CRYST1 149.365 68.919 100.543 90.00 114.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006695 0.000000 0.003022 0.00000 SCALE2 0.000000 0.014510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010912 0.00000