HEADER LYASE 06-APR-21 7ME8 TITLE THE INTERNAL ALDIMINE FORM OF THE WILD-TYPE SALMONELLA TYPHIMURIUM TITLE 2 TRYPTOPHAN SYNTHASE IN COMPLEX WITH N-(4'-TRIFLUOROMETHOXYBENZOYL)-2- TITLE 3 AMINO-1-ETHYLPHOSPHATE (F6F) INHIBITOR AT THE BETA-SITE, SODIUM ION TITLE 4 AT THE METAL COORDINATION SITE AND DUAL BETA-Q114 ROTAMER TITLE 5 CONFORMATION AT 1.60 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHAN SYNTHASE ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.20; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRYPTOPHAN SYNTHASE BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 EC: 4.2.1.20; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / SOURCE 3 ATCC 700720); SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 6 GENE: TRPA, STM1727; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: CB149; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PBR322; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEBA-10; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / SOURCE 14 ATCC 700720); SOURCE 15 ORGANISM_TAXID: 99287; SOURCE 16 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 17 GENE: TRPB; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: CB149; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PBR322; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PEBA-10 KEYWDS INHIBITOR, INTERNAL ALDIMINE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.HILARIO,M.F.DUNN,L.J.MUELLER REVDAT 2 18-OCT-23 7ME8 1 REMARK REVDAT 1 13-OCT-21 7ME8 0 JRNL AUTH E.HILARIO,M.F.DUNN,L.J.MUELLER JRNL TITL THE INTERNAL ALDIMINE FORM OF THE WILD-TYPE SALMONELLA JRNL TITL 2 TYPHIMURIUM TRYPTOPHAN SYNTHASE IN COMPLEX WITH JRNL TITL 3 N-(4'-TRIFLUOROMETHOXYBENZOYL)-2-AMINO-1-ETHYLPHOSPHATE JRNL TITL 4 (F6F) INHIBITOR AT THE BETA-SITE, SODIUM ION AT THE METAL JRNL TITL 5 COORDINATION SITE AND DUAL BETA-Q114 ROTAMER CONFORMATION AT JRNL TITL 6 1.60 ANGSTROM RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 85638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3900 - 4.3400 0.98 4612 211 0.1627 0.1772 REMARK 3 2 4.3400 - 3.4500 0.97 4482 216 0.1723 0.2125 REMARK 3 3 3.4500 - 3.0100 0.97 4425 257 0.1763 0.2095 REMARK 3 4 3.0100 - 2.7400 0.96 4366 237 0.1872 0.2227 REMARK 3 5 2.7400 - 2.5400 0.96 4376 213 0.1841 0.2220 REMARK 3 6 2.5400 - 2.3900 0.95 4296 232 0.1938 0.2321 REMARK 3 7 2.3900 - 2.2700 0.88 3978 213 0.2304 0.2961 REMARK 3 8 2.2700 - 2.1700 0.93 4170 219 0.3420 0.3737 REMARK 3 9 2.1700 - 2.0900 0.93 4264 193 0.1914 0.2371 REMARK 3 10 2.0900 - 2.0200 0.93 4219 220 0.1864 0.2122 REMARK 3 11 2.0200 - 1.9500 0.84 3790 207 0.2254 0.2879 REMARK 3 12 1.9500 - 1.9000 0.85 3854 197 0.4101 0.4573 REMARK 3 13 1.9000 - 1.8500 0.90 4045 201 0.2555 0.2767 REMARK 3 14 1.8500 - 1.8000 0.91 4105 231 0.2244 0.2651 REMARK 3 15 1.8000 - 1.7600 0.91 4074 219 0.2157 0.2609 REMARK 3 16 1.7600 - 1.7200 0.90 4074 211 0.2169 0.2648 REMARK 3 17 1.7200 - 1.6900 0.90 4075 210 0.2174 0.2446 REMARK 3 18 1.6900 - 1.6600 0.89 4019 230 0.2265 0.2719 REMARK 3 19 1.6600 - 1.6300 0.79 3558 203 0.2254 0.2736 REMARK 3 20 1.6300 - 1.6000 0.58 2620 116 0.2261 0.2403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8907 14.9846 12.1515 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.1426 REMARK 3 T33: 0.1793 T12: -0.0225 REMARK 3 T13: 0.0102 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.0830 L22: 1.1729 REMARK 3 L33: 1.3920 L12: 0.0233 REMARK 3 L13: 0.3971 L23: 0.1653 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.2523 S13: 0.2652 REMARK 3 S21: 0.0274 S22: -0.0537 S23: -0.0721 REMARK 3 S31: -0.1413 S32: 0.1241 S33: -0.0335 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4768 7.3187 7.5221 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.0907 REMARK 3 T33: 0.1163 T12: -0.0010 REMARK 3 T13: 0.0174 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.8671 L22: 1.5707 REMARK 3 L33: 0.8644 L12: 0.5886 REMARK 3 L13: 0.1422 L23: 0.3981 REMARK 3 S TENSOR REMARK 3 S11: 0.0705 S12: -0.0872 S13: 0.1887 REMARK 3 S21: -0.0242 S22: -0.0968 S23: 0.0709 REMARK 3 S31: -0.1122 S32: -0.0389 S33: 0.0339 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3359 -5.2992 18.5676 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.2560 REMARK 3 T33: 0.2427 T12: -0.0107 REMARK 3 T13: -0.0568 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 2.3264 L22: 3.3284 REMARK 3 L33: 1.4171 L12: -0.1127 REMARK 3 L13: -0.1624 L23: -0.0880 REMARK 3 S TENSOR REMARK 3 S11: 0.1292 S12: -0.5288 S13: -0.4074 REMARK 3 S21: 0.4265 S22: -0.0965 S23: -0.2930 REMARK 3 S31: 0.2309 S32: 0.1672 S33: -0.0204 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3518 16.2373 21.9372 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.3115 REMARK 3 T33: 0.2453 T12: -0.0717 REMARK 3 T13: -0.0246 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 0.9968 L22: 1.7720 REMARK 3 L33: 0.9083 L12: -0.2005 REMARK 3 L13: 0.3530 L23: -0.2220 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.2509 S13: 0.2311 REMARK 3 S21: 0.3882 S22: -0.1979 S23: 0.0863 REMARK 3 S31: -0.2605 S32: 0.0382 S33: 0.1323 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7087 -12.9929 19.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.1657 REMARK 3 T33: 0.1282 T12: 0.0098 REMARK 3 T13: -0.0033 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.9839 L22: 0.8149 REMARK 3 L33: 1.2633 L12: 0.1867 REMARK 3 L13: 0.0298 L23: -0.4214 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0479 S13: -0.1629 REMARK 3 S21: 0.0632 S22: -0.0418 S23: -0.1260 REMARK 3 S31: 0.0706 S32: 0.2188 S33: 0.0411 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0441 -7.1788 28.3375 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.1012 REMARK 3 T33: 0.1005 T12: -0.0035 REMARK 3 T13: 0.0099 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.5481 L22: 0.3737 REMARK 3 L33: 1.0647 L12: 0.2175 REMARK 3 L13: 0.2069 L23: 0.2524 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.0336 S13: 0.1717 REMARK 3 S21: 0.0074 S22: -0.0178 S23: -0.0379 REMARK 3 S31: -0.0686 S32: 0.1213 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 221 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9432 -4.2074 11.3746 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.0917 REMARK 3 T33: 0.0817 T12: -0.0070 REMARK 3 T13: -0.0125 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.3261 L22: 0.2673 REMARK 3 L33: 0.7345 L12: -0.1327 REMARK 3 L13: -0.3863 L23: -0.1757 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0309 S13: 0.1528 REMARK 3 S21: -0.0232 S22: 0.0050 S23: -0.0183 REMARK 3 S31: -0.0564 S32: 0.0289 S33: -0.0187 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 344 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7977 -3.5731 15.7443 REMARK 3 T TENSOR REMARK 3 T11: 0.1103 T22: 0.1052 REMARK 3 T33: 0.0999 T12: 0.0207 REMARK 3 T13: 0.0174 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.3938 L22: 0.7580 REMARK 3 L33: 2.4689 L12: 0.5103 REMARK 3 L13: 0.5961 L23: -0.0334 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.0328 S13: 0.1913 REMARK 3 S21: 0.0309 S22: 0.0419 S23: 0.1039 REMARK 3 S31: -0.3315 S32: -0.1614 S33: -0.0252 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ME8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HIGHFLUX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.902 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 91.348 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23600 REMARK 200 R SYM FOR SHELL (I) : 0.23600 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.02 REMARK 200 STARTING MODEL: 4HT3 REMARK 200 REMARK 200 REMARK: LARGE PLATE-LIKE CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BICINE-CSOH, 10% PEG 8,000, 2 MM REMARK 280 SPERMINE, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.70200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.70200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -5.91054 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.01887 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 VAL A 182 REMARK 465 THR A 183 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 GLU A 186 REMARK 465 ASN A 187 REMARK 465 ARG A 188 REMARK 465 GLY A 189 REMARK 465 ALA A 190 REMARK 465 LEU A 191 REMARK 465 PRO A 192 REMARK 465 ALA A 268 REMARK 465 MET B 1 REMARK 465 GLY B 395 REMARK 465 GLU B 396 REMARK 465 ILE B 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CD OE1 OE2 REMARK 470 ARG A 15 NE CZ NH1 NH2 REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 LEU A 58 CG CD1 CD2 REMARK 470 ASN A 157 CG OD1 ND2 REMARK 470 LEU A 193 CG CD1 CD2 REMARK 470 GLU A 198 CD OE1 OE2 REMARK 470 PHE A 212 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 243 CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 GLU B 30 CD OE1 OE2 REMARK 470 LYS B 129 CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 GLU B 182 CD OE1 OE2 REMARK 470 LYS B 392 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 165 -164.36 -123.82 REMARK 500 ALA B 269 65.50 -117.47 REMARK 500 SER B 308 -157.20 -135.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 964 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 965 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 966 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH B 953 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 954 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 955 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 956 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 957 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH B 958 DISTANCE = 7.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 232 O REMARK 620 2 PHE B 306 O 99.8 REMARK 620 3 SER B 308 O 96.3 86.3 REMARK 620 4 HOH B 574 O 112.8 73.4 146.7 REMARK 620 5 HOH B 722 O 90.7 163.6 105.2 91.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BW6 RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 4WX2 RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 7LY8 RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 7M3S RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 7KU9 RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 7M2L RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 4Y6G RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 4ZQC RELATED DB: PDB REMARK 900 INHIBITOR F6F REMARK 900 RELATED ID: 4KKX RELATED DB: PDB REMARK 900 INHIBITOR F6F DBREF 7ME8 A 1 268 UNP P00929 TRPA_SALTY 1 268 DBREF 7ME8 B 1 397 UNP P0A2K1 TRPB_SALTY 1 397 SEQRES 1 A 268 MET GLU ARG TYR GLU ASN LEU PHE ALA GLN LEU ASN ASP SEQRES 2 A 268 ARG ARG GLU GLY ALA PHE VAL PRO PHE VAL THR LEU GLY SEQRES 3 A 268 ASP PRO GLY ILE GLU GLN SER LEU LYS ILE ILE ASP THR SEQRES 4 A 268 LEU ILE ASP ALA GLY ALA ASP ALA LEU GLU LEU GLY VAL SEQRES 5 A 268 PRO PHE SER ASP PRO LEU ALA ASP GLY PRO THR ILE GLN SEQRES 6 A 268 ASN ALA ASN LEU ARG ALA PHE ALA ALA GLY VAL THR PRO SEQRES 7 A 268 ALA GLN CYS PHE GLU MET LEU ALA LEU ILE ARG GLU LYS SEQRES 8 A 268 HIS PRO THR ILE PRO ILE GLY LEU LEU MET TYR ALA ASN SEQRES 9 A 268 LEU VAL PHE ASN ASN GLY ILE ASP ALA PHE TYR ALA ARG SEQRES 10 A 268 CYS GLU GLN VAL GLY VAL ASP SER VAL LEU VAL ALA ASP SEQRES 11 A 268 VAL PRO VAL GLU GLU SER ALA PRO PHE ARG GLN ALA ALA SEQRES 12 A 268 LEU ARG HIS ASN ILE ALA PRO ILE PHE ILE CYS PRO PRO SEQRES 13 A 268 ASN ALA ASP ASP ASP LEU LEU ARG GLN VAL ALA SER TYR SEQRES 14 A 268 GLY ARG GLY TYR THR TYR LEU LEU SER ARG SER GLY VAL SEQRES 15 A 268 THR GLY ALA GLU ASN ARG GLY ALA LEU PRO LEU HIS HIS SEQRES 16 A 268 LEU ILE GLU LYS LEU LYS GLU TYR HIS ALA ALA PRO ALA SEQRES 17 A 268 LEU GLN GLY PHE GLY ILE SER SER PRO GLU GLN VAL SER SEQRES 18 A 268 ALA ALA VAL ARG ALA GLY ALA ALA GLY ALA ILE SER GLY SEQRES 19 A 268 SER ALA ILE VAL LYS ILE ILE GLU LYS ASN LEU ALA SER SEQRES 20 A 268 PRO LYS GLN MET LEU ALA GLU LEU ARG SER PHE VAL SER SEQRES 21 A 268 ALA MET LYS ALA ALA SER ARG ALA SEQRES 1 B 397 MET THR THR LEU LEU ASN PRO TYR PHE GLY GLU PHE GLY SEQRES 2 B 397 GLY MET TYR VAL PRO GLN ILE LEU MET PRO ALA LEU ASN SEQRES 3 B 397 GLN LEU GLU GLU ALA PHE VAL SER ALA GLN LYS ASP PRO SEQRES 4 B 397 GLU PHE GLN ALA GLN PHE ALA ASP LEU LEU LYS ASN TYR SEQRES 5 B 397 ALA GLY ARG PRO THR ALA LEU THR LYS CYS GLN ASN ILE SEQRES 6 B 397 THR ALA GLY THR ARG THR THR LEU TYR LEU LYS ARG GLU SEQRES 7 B 397 ASP LEU LEU HIS GLY GLY ALA HIS LYS THR ASN GLN VAL SEQRES 8 B 397 LEU GLY GLN ALA LEU LEU ALA LYS ARG MET GLY LYS SER SEQRES 9 B 397 GLU ILE ILE ALA GLU THR GLY ALA GLY GLN HIS GLY VAL SEQRES 10 B 397 ALA SER ALA LEU ALA SER ALA LEU LEU GLY LEU LYS CYS SEQRES 11 B 397 ARG ILE TYR MET GLY ALA LYS ASP VAL GLU ARG GLN SER SEQRES 12 B 397 PRO ASN VAL PHE ARG MET ARG LEU MET GLY ALA GLU VAL SEQRES 13 B 397 ILE PRO VAL HIS SER GLY SER ALA THR LEU LYS ASP ALA SEQRES 14 B 397 CYS ASN GLU ALA LEU ARG ASP TRP SER GLY SER TYR GLU SEQRES 15 B 397 THR ALA HIS TYR MET LEU GLY THR ALA ALA GLY PRO HIS SEQRES 16 B 397 PRO TYR PRO THR ILE VAL ARG GLU PHE GLN ARG MET ILE SEQRES 17 B 397 GLY GLU GLU THR LYS ALA GLN ILE LEU ASP LYS GLU GLY SEQRES 18 B 397 ARG LEU PRO ASP ALA VAL ILE ALA CYS VAL GLY GLY GLY SEQRES 19 B 397 SER ASN ALA ILE GLY MET PHE ALA ASP PHE ILE ASN ASP SEQRES 20 B 397 THR SER VAL GLY LEU ILE GLY VAL GLU PRO GLY GLY HIS SEQRES 21 B 397 GLY ILE GLU THR GLY GLU HIS GLY ALA PRO LEU LYS HIS SEQRES 22 B 397 GLY ARG VAL GLY ILE TYR PHE GLY MET LYS ALA PRO MET SEQRES 23 B 397 MET GLN THR ALA ASP GLY GLN ILE GLU GLU SER TYR SER SEQRES 24 B 397 ILE SER ALA GLY LEU ASP PHE PRO SER VAL GLY PRO GLN SEQRES 25 B 397 HIS ALA TYR LEU ASN SER ILE GLY ARG ALA ASP TYR VAL SEQRES 26 B 397 SER ILE THR ASP ASP GLU ALA LEU GLU ALA PHE LYS THR SEQRES 27 B 397 LEU CYS ARG HIS GLU GLY ILE ILE PRO ALA LEU GLU SER SEQRES 28 B 397 SER HIS ALA LEU ALA HIS ALA LEU LYS MET MET ARG GLU SEQRES 29 B 397 GLN PRO GLU LYS GLU GLN LEU LEU VAL VAL ASN LEU SER SEQRES 30 B 397 GLY ARG GLY ASP LYS ASP ILE PHE THR VAL HIS ASP ILE SEQRES 31 B 397 LEU LYS ALA ARG GLY GLU ILE HET EDO A 301 4 HET PLP B 401 15 HET F6F B 402 21 HET PEG B 403 7 HET NA B 404 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM F6F 2-{[4-(TRIFLUOROMETHOXY)BENZOYL]AMINO}ETHYL DIHYDROGEN HETNAM 2 F6F PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN F6F N-(4'-TRIFLUOROMETHOXYBENZOYL)-2-AMINO-1- HETSYN 2 F6F ETHYLPHOSPHATE, F6 FORMUL 3 EDO C2 H6 O2 FORMUL 4 PLP C8 H10 N O6 P FORMUL 5 F6F C10 H11 F3 N O6 P FORMUL 6 PEG C4 H10 O3 FORMUL 7 NA NA 1+ FORMUL 8 HOH *726(H2 O) HELIX 1 AA1 GLU A 2 ARG A 14 1 13 HELIX 2 AA2 GLY A 29 ALA A 43 1 15 HELIX 3 AA3 GLY A 61 ALA A 74 1 14 HELIX 4 AA4 THR A 77 HIS A 92 1 16 HELIX 5 AA5 TYR A 102 ASN A 108 1 7 HELIX 6 AA6 GLY A 110 GLY A 122 1 13 HELIX 7 AA7 PRO A 132 GLU A 135 5 4 HELIX 8 AA8 SER A 136 HIS A 146 1 11 HELIX 9 AA9 ASP A 159 GLY A 170 1 12 HELIX 10 AB1 HIS A 194 TYR A 203 1 10 HELIX 11 AB2 SER A 216 ALA A 226 1 11 HELIX 12 AB3 GLY A 234 ASN A 244 1 11 HELIX 13 AB4 SER A 247 ALA A 265 1 19 HELIX 14 AB5 PRO B 18 ILE B 20 5 3 HELIX 15 AB6 LEU B 21 LYS B 37 1 17 HELIX 16 AB7 ASP B 38 TYR B 52 1 15 HELIX 17 AB8 CYS B 62 ALA B 67 1 6 HELIX 18 AB9 ASP B 79 LEU B 81 5 3 HELIX 19 AC1 HIS B 86 MET B 101 1 16 HELIX 20 AC2 GLY B 113 GLY B 127 1 15 HELIX 21 AC3 ALA B 136 GLN B 142 1 7 HELIX 22 AC4 GLN B 142 MET B 152 1 11 HELIX 23 AC5 THR B 165 TYR B 181 1 17 HELIX 24 AC6 PRO B 196 PHE B 204 1 9 HELIX 25 AC7 ARG B 206 GLY B 221 1 16 HELIX 26 AC8 GLY B 234 ALA B 242 1 9 HELIX 27 AC9 ASP B 243 ILE B 245 5 3 HELIX 28 AD1 GLY B 261 GLY B 265 5 5 HELIX 29 AD2 ALA B 269 GLY B 274 1 6 HELIX 30 AD3 SER B 301 ASP B 305 5 5 HELIX 31 AD4 GLY B 310 ILE B 319 1 10 HELIX 32 AD5 ASP B 329 GLY B 344 1 16 HELIX 33 AD6 ALA B 348 GLN B 365 1 18 HELIX 34 AD7 GLY B 380 LYS B 382 5 3 HELIX 35 AD8 ASP B 383 ALA B 393 1 11 SHEET 1 AA1 9 ALA A 149 ILE A 151 0 SHEET 2 AA1 9 SER A 125 VAL A 128 1 N VAL A 126 O ILE A 151 SHEET 3 AA1 9 ILE A 97 MET A 101 1 N MET A 101 O LEU A 127 SHEET 4 AA1 9 LEU A 48 GLY A 51 1 N LEU A 50 O GLY A 98 SHEET 5 AA1 9 ALA A 18 THR A 24 1 N VAL A 23 O GLY A 51 SHEET 6 AA1 9 GLY A 230 SER A 233 1 O ALA A 231 N VAL A 20 SHEET 7 AA1 9 ALA A 208 GLN A 210 1 N GLN A 210 O ILE A 232 SHEET 8 AA1 9 THR A 174 LEU A 176 1 N LEU A 176 O LEU A 209 SHEET 9 AA1 9 ILE A 153 CYS A 154 1 N CYS A 154 O TYR A 175 SHEET 1 AA2 2 TYR B 8 PHE B 9 0 SHEET 2 AA2 2 PHE B 12 GLY B 13 -1 O PHE B 12 N PHE B 9 SHEET 1 AA3 6 LEU B 59 LYS B 61 0 SHEET 2 AA3 6 THR B 71 ARG B 77 -1 O LEU B 75 N THR B 60 SHEET 3 AA3 6 GLN B 370 LEU B 376 1 O LEU B 372 N THR B 72 SHEET 4 AA3 6 ALA B 226 CYS B 230 1 N ILE B 228 O ASN B 375 SHEET 5 AA3 6 GLY B 251 GLY B 259 1 O VAL B 255 N ALA B 229 SHEET 6 AA3 6 ASP B 323 THR B 328 1 O ILE B 327 N GLY B 258 SHEET 1 AA4 4 GLU B 155 VAL B 159 0 SHEET 2 AA4 4 LYS B 129 GLY B 135 1 N ILE B 132 O ILE B 157 SHEET 3 AA4 4 GLU B 105 THR B 110 1 N ALA B 108 O TYR B 133 SHEET 4 AA4 4 ALA B 184 MET B 187 1 O MET B 187 N ILE B 107 SHEET 1 AA5 2 ARG B 275 TYR B 279 0 SHEET 2 AA5 2 MET B 282 MET B 286 -1 O ALA B 284 N GLY B 277 LINK NZ LYS B 87 C4A PLP B 401 1555 1555 1.32 LINK O GLY B 232 NA NA B 404 1555 1555 2.28 LINK O PHE B 306 NA NA B 404 1555 1555 2.39 LINK O SER B 308 NA NA B 404 1555 1555 2.30 LINK NA NA B 404 O HOH B 574 1555 1555 2.51 LINK NA NA B 404 O HOH B 722 1555 1555 2.31 CISPEP 1 ASP A 27 PRO A 28 0 0.21 CISPEP 2 ARG B 55 PRO B 56 0 0.66 CISPEP 3 HIS B 195 PRO B 196 0 11.58 CRYST1 183.404 59.570 67.279 90.00 95.04 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005452 0.000000 0.000481 0.00000 SCALE2 0.000000 0.016787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014921 0.00000