HEADER IMMUNE SYSTEM/VIRAL PROTEIN 08-APR-21 7MF1 TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX TITLE 2 WITH NEUTRALIZING ANTIBODY 47D1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN, UNP RESIDUES 333-530; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 47D1 FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 47D1 FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COVID-19, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.YUAN,X.ZHU,I.A.WILSON REVDAT 4 06-NOV-24 7MF1 1 REMARK REVDAT 3 18-OCT-23 7MF1 1 REMARK REVDAT 2 26-MAY-21 7MF1 1 JRNL REVDAT 1 12-MAY-21 7MF1 0 JRNL AUTH X.ZHOU,F.MA,J.XIE,M.YUAN,Y.LI,N.SHAABANI,F.ZHAO,D.HUANG, JRNL AUTH 2 N.C.WU,C.D.LEE,H.LIU,J.LI,Z.CHEN,Y.HONG,W.H.LIU,N.XIAO, JRNL AUTH 3 D.R.BURTON,H.TU,H.LI,X.CHEN,J.R.TEIJARO,I.A.WILSON,C.XIAO, JRNL AUTH 4 Z.HUANG JRNL TITL DIVERSE IMMUNOGLOBULIN GENE USAGE AND CONVERGENT EPITOPE JRNL TITL 2 TARGETING IN NEUTRALIZING ANTIBODY RESPONSES TO SARS-COV-2. JRNL REF CELL REP V. 35 09109 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 33932326 JRNL DOI 10.1016/J.CELREP.2021.109109 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.8400 - 5.0414 1.00 3019 147 0.1883 0.2141 REMARK 3 2 5.0414 - 4.0017 1.00 2895 146 0.1703 0.2319 REMARK 3 3 4.0017 - 3.4959 1.00 2861 149 0.2041 0.2253 REMARK 3 4 3.4959 - 3.1763 1.00 2840 142 0.2195 0.2523 REMARK 3 5 3.1763 - 2.9486 1.00 2831 145 0.2226 0.2964 REMARK 3 6 2.9486 - 2.7747 1.00 2791 144 0.2311 0.2536 REMARK 3 7 2.7747 - 2.6358 1.00 2826 138 0.2271 0.2713 REMARK 3 8 2.6358 - 2.5210 1.00 2816 143 0.2224 0.2915 REMARK 3 9 2.5210 - 2.4240 1.00 2802 137 0.2394 0.3399 REMARK 3 10 2.4240 - 2.3403 1.00 2797 158 0.2399 0.3023 REMARK 3 11 2.3403 - 2.2672 1.00 2798 129 0.2618 0.3163 REMARK 3 12 2.2672 - 2.2023 1.00 2781 143 0.2755 0.3349 REMARK 3 13 2.2023 - 2.1444 1.00 2788 135 0.3164 0.3690 REMARK 3 14 2.1444 - 2.0920 1.00 2758 149 0.3486 0.3884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4983 REMARK 3 ANGLE : 0.605 6789 REMARK 3 CHIRALITY : 0.046 760 REMARK 3 PLANARITY : 0.004 870 REMARK 3 DIHEDRAL : 10.286 3292 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000255365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41608 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.092 REMARK 200 RESOLUTION RANGE LOW (A) : 65.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.90700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.5% ISOPROPANOL, 17% PEG 4000, 0.085 REMARK 280 M HEPES PH 7.5, 15% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.85550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.23050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.23050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.85550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 333 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 GLY A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 SER H 130 REMARK 465 LYS H 131 REMARK 465 SER H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 GLY H 135 REMARK 465 GLN L 1 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY H 100H OH TYR L 36 2.16 REMARK 500 OG SER A 359 OD1 ASN A 394 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 343 51.13 -98.01 REMARK 500 ALA A 352 51.71 -115.92 REMARK 500 TYR A 369 -42.34 69.45 REMARK 500 ASN A 370 32.24 -78.54 REMARK 500 PHE A 377 82.48 -152.64 REMARK 500 ASN A 422 -52.08 -126.73 REMARK 500 ASP A 428 41.02 -86.04 REMARK 500 HIS A 519 43.48 -87.10 REMARK 500 TRP H 100C -133.55 -110.56 REMARK 500 ASP L 27B -90.01 -145.98 REMARK 500 VAL L 51 -53.08 77.44 REMARK 500 ASP L 151 -99.59 57.59 REMARK 500 GLN L 167 -165.90 -75.15 REMARK 500 REMARK 500 REMARK: NULL DBREF 7MF1 A 333 530 UNP P0DTC2 SPIKE_SARS2 333 530 DBREF 7MF1 H 1 218 PDB 7MF1 7MF1 1 218 DBREF 7MF1 L 1 212 PDB 7MF1 7MF1 1 212 SEQADV 7MF1 GLY A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7MF1 HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7MF1 HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7MF1 HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7MF1 HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQADV 7MF1 HIS A 536 UNP P0DTC2 EXPRESSION TAG SEQADV 7MF1 HIS A 537 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 205 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 A 205 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 A 205 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 A 205 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 A 205 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 A 205 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 A 205 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 A 205 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 A 205 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 A 205 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 A 205 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 A 205 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 A 205 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 A 205 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 A 205 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 A 205 LYS LYS SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 H 230 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 230 PRO GLY SER SER VAL ARG VAL SER CYS LYS ALA SER GLY SEQRES 3 H 230 GLY THR PHE SER THR TYR PRO ILE SER TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 230 PRO ILE PHE GLY THR ALA LYS SER ALA GLN LYS PHE GLN SEQRES 6 H 230 GLY ARG VAL THR ILE THR ALA ASP GLU PHE THR SER THR SEQRES 7 H 230 ALA TYR MET GLU MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 230 ALA MET TYR TYR CYS ALA ARG GLU GLY ARG ARG TYR GLY SEQRES 9 H 230 SER GLY TRP TYR ILE SER THR GLY TYR PHE ASP TYR TRP SEQRES 10 H 230 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 H 230 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 230 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 230 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 230 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 230 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 230 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 230 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 230 ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 L 216 GLN LEU VAL LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER ILE ILE VAL SER CYS THR GLY THR SER SEQRES 3 L 216 SER ASP VAL GLY GLY TYR LYS PHE VAL SER TRP TYR GLN SEQRES 4 L 216 GLN HIS PRO GLY LYS ALA PRO ARG VAL MET ILE TYR ASP SEQRES 5 L 216 VAL SER ASN ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA ASP ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 216 SER TYR THR ASN SER SER THR VAL VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG A 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 6 HOH *120(H2 O) HELIX 1 AA1 PRO A 337 ASN A 343 1 7 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 ASP A 364 LEU A 368 5 5 HELIX 4 AA4 SER A 383 ASN A 388 1 6 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER A 438 SER A 443 1 6 HELIX 8 AA8 GLY A 502 TYR A 505 5 4 HELIX 9 AA9 GLN H 61 GLN H 64 5 4 HELIX 10 AB1 ARG H 83 THR H 87 5 5 HELIX 11 AB2 SER H 158 ALA H 160 5 3 HELIX 12 AB3 SER H 189 LEU H 191 5 3 HELIX 13 AB4 LYS H 203 ASN H 206 5 4 HELIX 14 AB5 GLN L 79 GLU L 83 5 5 HELIX 15 AB6 SER L 121 ALA L 127 1 7 HELIX 16 AB7 THR L 181 HIS L 188 1 8 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O ALA A 397 N LYS A 356 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 510 N PHE A 400 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 CYS A 379 -1 N LYS A 378 O VAL A 433 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 GLN H 3 GLN H 6 0 SHEET 2 AA5 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA5 4 THR H 77 MET H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA5 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA6 6 GLU H 10 LYS H 12 0 SHEET 2 AA6 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA6 6 ALA H 88 GLU H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA6 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA6 6 LEU H 45 ILE H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA6 6 THR H 56 SER H 59 -1 O THR H 56 N ILE H 52 SHEET 1 AA7 4 GLU H 10 LYS H 12 0 SHEET 2 AA7 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 4 ALA H 88 GLU H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA7 4 PHE H 100J TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA8 4 SER H 120 LEU H 124 0 SHEET 2 AA8 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 AA8 4 TYR H 178 PRO H 187 -1 O TYR H 178 N TYR H 147 SHEET 4 AA8 4 VAL H 165 THR H 167 -1 N HIS H 166 O VAL H 183 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 137 TYR H 147 -1 O LYS H 145 N SER H 120 SHEET 3 AA9 4 TYR H 178 PRO H 187 -1 O TYR H 178 N TYR H 147 SHEET 4 AA9 4 VAL H 171 LEU H 172 -1 N VAL H 171 O SER H 179 SHEET 1 AB1 3 THR H 153 TRP H 156 0 SHEET 2 AB1 3 ILE H 197 HIS H 202 -1 O ASN H 199 N SER H 155 SHEET 3 AB1 3 THR H 207 ARG H 212 -1 O VAL H 209 N VAL H 200 SHEET 1 AB2 5 SER L 9 GLY L 13 0 SHEET 2 AB2 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AB2 5 ALA L 84 TYR L 91 -1 N ALA L 84 O VAL L 104 SHEET 4 AB2 5 VAL L 33 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AB2 5 ARG L 45 ILE L 48 -1 O MET L 47 N TRP L 35 SHEET 1 AB3 4 SER L 9 GLY L 13 0 SHEET 2 AB3 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AB3 4 ALA L 84 TYR L 91 -1 N ALA L 84 O VAL L 104 SHEET 4 AB3 4 VAL L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB4 3 ILE L 19 THR L 24 0 SHEET 2 AB4 3 THR L 70 ILE L 75 -1 O ALA L 71 N CYS L 23 SHEET 3 AB4 3 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 AB5 4 SER L 114 PHE L 118 0 SHEET 2 AB5 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB5 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB5 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB6 4 SER L 114 PHE L 118 0 SHEET 2 AB6 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB6 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB6 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB7 4 SER L 153 VAL L 155 0 SHEET 2 AB7 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB7 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB7 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.04 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 6 CYS H 142 CYS H 198 1555 1555 2.04 SSBOND 7 CYS H 218 CYS L 211 1555 1555 2.03 SSBOND 8 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 9 CYS L 134 CYS L 193 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN L 93 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.37 CISPEP 1 PHE H 148 PRO H 149 0 -5.27 CISPEP 2 GLU H 150 PRO H 151 0 1.69 CISPEP 3 TYR L 140 PRO L 141 0 0.98 CRYST1 75.711 81.213 112.461 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013208 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008892 0.00000