HEADER IMMUNE SYSTEM 11-APR-21 7MFV TITLE CRYSTAL STRUCTURE OF SYNTHETIC NANOBODY (SB16) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTHETIC NANOBODY #16 (SB16); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI MC1061; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1211845; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SARS-COV-2, SPIKE PROTEIN, RBD, ANTIBODY, NANOBODY, SYBODY, VIRAL KEYWDS 2 PROTEIN, EPITOPE, NEUTRALIZATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.JIANG,J.AHMAD,K.NATARAJAN,L.F.BOYD,D.H.MARGULIES REVDAT 6 23-OCT-24 7MFV 1 REMARK REVDAT 5 18-OCT-23 7MFV 1 JRNL REVDAT 4 20-OCT-21 7MFV 1 JRNL REVDAT 3 29-SEP-21 7MFV 1 JRNL REVDAT 2 01-SEP-21 7MFV 1 TITLE COMPND REMARK SSBOND REVDAT 2 2 1 ATOM REVDAT 1 02-JUN-21 7MFV 0 SPRSDE 02-JUN-21 7MFV 7KGL JRNL AUTH J.AHMAD,J.JIANG,L.F.BOYD,A.ZEHER,R.HUANG,D.XIA,K.NATARAJAN, JRNL AUTH 2 D.H.MARGULIES JRNL TITL STRUCTURES OF SYNTHETIC NANOBODY-SARS-COV-2 RECEPTOR-BINDING JRNL TITL 2 DOMAIN COMPLEXES REVEAL DISTINCT SITES OF INTERACTION. JRNL REF J.BIOL.CHEM. V. 297 01202 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34537245 JRNL DOI 10.1016/J.JBC.2021.101202 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.AHMAD,J.JIANG,L.F.BOYD,K.NATARAJAN,D.H.MARGULIES REMARK 1 TITL SYNTHETIC NANOBODY-SARS-COV-2 RECEPTOR-BINDING DOMAIN REMARK 1 TITL 2 STRUCTURES IDENTIFY DISTINCT EPITOPES. REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 33532775 REMARK 1 DOI 10.1101/2021.01.27.428466 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 11787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8700 - 3.2500 0.99 2493 160 0.2048 0.2114 REMARK 3 2 3.2500 - 2.5800 0.98 2288 145 0.2524 0.2528 REMARK 3 3 2.5800 - 2.2500 0.96 2209 141 0.2753 0.3150 REMARK 3 4 2.2500 - 2.0500 0.92 2112 135 0.2837 0.3218 REMARK 3 5 2.0500 - 1.9000 0.87 1978 126 0.3202 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.268 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 940 REMARK 3 ANGLE : 0.951 1276 REMARK 3 CHIRALITY : 0.452 134 REMARK 3 PLANARITY : 0.006 161 REMARK 3 DIHEDRAL : 15.885 329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2419 19.7711 13.7532 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.6468 REMARK 3 T33: 0.2723 T12: 0.0585 REMARK 3 T13: -0.0078 T23: 0.1246 REMARK 3 L TENSOR REMARK 3 L11: 4.1024 L22: 4.1255 REMARK 3 L33: 2.2058 L12: 0.5128 REMARK 3 L13: 0.3916 L23: 1.5465 REMARK 3 S TENSOR REMARK 3 S11: -0.3154 S12: -1.2760 S13: -0.3104 REMARK 3 S21: 0.3064 S22: 0.3124 S23: 0.5121 REMARK 3 S31: 0.1584 S32: 0.0689 S33: -0.0812 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2037 9.2215 13.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.3624 T22: 0.5246 REMARK 3 T33: 0.4875 T12: -0.0403 REMARK 3 T13: 0.0178 T23: 0.2753 REMARK 3 L TENSOR REMARK 3 L11: 5.0661 L22: 4.5240 REMARK 3 L33: 7.1477 L12: -3.6492 REMARK 3 L13: -0.4741 L23: -1.1550 REMARK 3 S TENSOR REMARK 3 S11: -0.1022 S12: -0.9976 S13: -1.2930 REMARK 3 S21: 0.5336 S22: 0.1250 S23: 0.7211 REMARK 3 S31: 0.7251 S32: -0.5436 S33: -0.0198 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4226 24.1475 15.0468 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.4540 REMARK 3 T33: 0.2372 T12: 0.0746 REMARK 3 T13: -0.0114 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 4.4581 L22: 6.4971 REMARK 3 L33: 4.5910 L12: 2.2319 REMARK 3 L13: -0.8307 L23: -4.0925 REMARK 3 S TENSOR REMARK 3 S11: -0.2584 S12: -0.7353 S13: 0.2346 REMARK 3 S21: 0.4949 S22: 0.6674 S23: -0.4169 REMARK 3 S31: -0.5123 S32: 0.0269 S33: -0.4041 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7767 20.8722 7.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.2489 REMARK 3 T33: 0.1555 T12: -0.0455 REMARK 3 T13: 0.0204 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 5.9118 L22: 7.1774 REMARK 3 L33: 6.6016 L12: -2.5417 REMARK 3 L13: 1.3523 L23: 1.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.1879 S12: -0.3034 S13: -0.0915 REMARK 3 S21: -0.3044 S22: 0.1238 S23: -0.0385 REMARK 3 S31: -0.3361 S32: 0.0684 S33: 0.0920 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0015 18.9045 6.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.2623 REMARK 3 T33: 0.2222 T12: -0.0734 REMARK 3 T13: -0.0579 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 6.7573 L22: 8.7829 REMARK 3 L33: 8.1823 L12: -4.4058 REMARK 3 L13: -3.7692 L23: 3.6029 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: -0.7888 S13: -0.1690 REMARK 3 S21: -0.7057 S22: 0.5899 S23: 0.1431 REMARK 3 S31: -0.2089 S32: 0.4245 S33: -0.4575 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0968 12.5549 15.6687 REMARK 3 T TENSOR REMARK 3 T11: 0.3664 T22: 0.6201 REMARK 3 T33: 0.3809 T12: 0.1692 REMARK 3 T13: 0.0674 T23: 0.4214 REMARK 3 L TENSOR REMARK 3 L11: 3.0130 L22: 1.8089 REMARK 3 L33: 4.5783 L12: 0.2192 REMARK 3 L13: 1.3625 L23: 1.1023 REMARK 3 S TENSOR REMARK 3 S11: -0.1696 S12: -1.5231 S13: -1.3426 REMARK 3 S21: 0.9182 S22: 0.6569 S23: 0.2190 REMARK 3 S31: 1.0960 S32: -0.3704 S33: -0.2075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 - 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.07390 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 1.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7KGL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.1M MES PH 6.0, 0.2M REMARK 280 LISO4, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.58500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.58500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.58500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.58500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.58500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.58500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 354 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 358 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 370 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 1 NE2 REMARK 480 MET B 34 CG REMARK 480 GLU B 44 CB CG CD REMARK 480 LYS B 57 CG CD CE NZ REMARK 480 ASP B 63 OD1 REMARK 480 GLN B 108 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 58 114.99 -164.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7KGJ RELATED DB: PDB REMARK 900 RELATED ID: 7KGK RELATED DB: PDB REMARK 900 RELATED ID: 7KGL RELATED DB: PDB REMARK 900 RELATED ID: 7KLW RELATED DB: PDB DBREF 7MFV B 1 116 PDB 7MFV 7MFV 1 116 SEQRES 1 B 116 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 116 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 116 PHE PRO VAL ALA TYR LYS THR MET TRP TRP TYR ARG GLN SEQRES 4 B 116 ALA PRO GLY LYS GLU ARG GLU TRP VAL ALA ALA ILE GLU SEQRES 5 B 116 SER TYR GLY ILE LYS TRP THR ARG TYR ALA ASP SER VAL SEQRES 6 B 116 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 B 116 THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP SEQRES 8 B 116 THR ALA VAL TYR TYR CYS ILE VAL TRP VAL GLY ALA GLN SEQRES 9 B 116 TYR HIS GLY GLN GLY THR GLN VAL THR VAL SER ALA HET EDO B 201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *70(H2 O) HELIX 1 AA1 PRO B 28 LYS B 32 5 5 HELIX 2 AA2 LYS B 88 THR B 92 5 5 SHEET 1 AA1 4 GLN B 3 SER B 7 0 SHEET 2 AA1 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA1 4 THR B 79 MET B 84 -1 O MET B 84 N LEU B 18 SHEET 4 AA1 4 PHE B 69 ASP B 74 -1 N SER B 72 O TYR B 81 SHEET 1 AA2 6 GLY B 10 GLN B 13 0 SHEET 2 AA2 6 THR B 110 SER B 115 1 O THR B 113 N GLY B 10 SHEET 3 AA2 6 ALA B 93 TRP B 100 -1 N TYR B 95 O THR B 110 SHEET 4 AA2 6 MET B 34 GLN B 39 -1 N TYR B 37 O TYR B 96 SHEET 5 AA2 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA2 6 THR B 59 TYR B 61 -1 O ARG B 60 N ALA B 50 SHEET 1 AA3 4 GLY B 10 GLN B 13 0 SHEET 2 AA3 4 THR B 110 SER B 115 1 O THR B 113 N GLY B 10 SHEET 3 AA3 4 ALA B 93 TRP B 100 -1 N TYR B 95 O THR B 110 SHEET 4 AA3 4 GLN B 104 HIS B 106 -1 O TYR B 105 N VAL B 99 SSBOND 1 CYS B 22 CYS B 97 1555 1555 2.03 CRYST1 68.920 68.920 107.170 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014510 0.008377 0.000000 0.00000 SCALE2 0.000000 0.016754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009331 0.00000