HEADER TRANSFERASE 15-APR-21 7MHV TITLE CRYSTAL STRUCTURE OF CYSTEINE DESULFURASE NIFS FROM LEGIONELLA TITLE 2 PNEUMOPHILA PHILADELPHIA 1 IN COMPLEX WITH PYRIDOXAL 5'-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 ATCC: 33152; SOURCE 7 GENE: ISCS, LPG1746; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: LEPNA.00081.A.B1 KEYWDS SSGCID, CYSTEINE DESULFURASE, LEGIONELLA PNEUMOPHILA, PYRIDOXAL 5'- KEYWDS 2 PHOSPHATE, AMINOTRANSFERASE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 15-NOV-23 7MHV 1 REMARK REVDAT 2 18-OCT-23 7MHV 1 REMARK REVDAT 1 26-MAY-21 7MHV 0 JRNL AUTH R.S.SIDHU,J.ABENDROTH,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF CYSTEINE DESULFURASE NIFS FROM JRNL TITL 2 LEGIONELLA PNEUMOPHILA PHILADELPHIA 1 IN COMPLEX WITH JRNL TITL 3 PYRIDOXAL 5'-PHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 45385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.480 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1200 - 4.3200 1.00 3045 128 0.1516 0.1434 REMARK 3 2 4.3100 - 3.4300 1.00 2988 116 0.1255 0.1339 REMARK 3 3 3.4200 - 2.9900 1.00 2919 143 0.1492 0.1808 REMARK 3 4 2.9900 - 2.7200 0.99 2961 135 0.1587 0.1822 REMARK 3 5 2.7200 - 2.5200 0.99 2912 139 0.1615 0.1834 REMARK 3 6 2.5200 - 2.3800 0.99 2900 128 0.1694 0.1981 REMARK 3 7 2.3800 - 2.2600 1.00 2876 155 0.1640 0.2093 REMARK 3 8 2.2600 - 2.1600 1.00 2940 134 0.1618 0.1720 REMARK 3 9 2.1600 - 2.0700 1.00 2940 123 0.1582 0.2013 REMARK 3 10 2.0700 - 2.0000 1.00 2880 151 0.1596 0.1922 REMARK 3 11 2.0000 - 1.9400 1.00 2914 140 0.1642 0.1920 REMARK 3 12 1.9400 - 1.8900 1.00 2877 140 0.1842 0.2066 REMARK 3 13 1.8900 - 1.8400 1.00 2900 153 0.2152 0.2744 REMARK 3 14 1.8400 - 1.7900 0.97 2840 127 0.2269 0.2253 REMARK 3 15 1.7900 - 1.7500 0.85 2460 121 0.2450 0.2472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.151 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.029 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2969 REMARK 3 ANGLE : 0.934 4035 REMARK 3 CHIRALITY : 0.061 464 REMARK 3 PLANARITY : 0.006 524 REMARK 3 DIHEDRAL : 19.991 437 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9666 12.1723 -44.9957 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.0938 REMARK 3 T33: 0.0966 T12: -0.0101 REMARK 3 T13: -0.0077 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 2.0104 L22: 0.5131 REMARK 3 L33: 0.7699 L12: -0.2765 REMARK 3 L13: -0.3199 L23: -0.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.2250 S13: -0.1919 REMARK 3 S21: -0.0610 S22: -0.0263 S23: 0.0167 REMARK 3 S31: 0.0767 S32: 0.0379 S33: -0.0011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9410 36.4974 -30.7007 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.0739 REMARK 3 T33: 0.1227 T12: 0.0072 REMARK 3 T13: -0.0146 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.3444 L22: 1.2162 REMARK 3 L33: 1.1019 L12: -0.3216 REMARK 3 L13: -0.0211 L23: 0.1959 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: -0.0575 S13: 0.2013 REMARK 3 S21: 0.0386 S22: 0.0230 S23: -0.0642 REMARK 3 S31: -0.1849 S32: -0.0368 S33: 0.0359 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2031 25.8690 -39.8867 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.0882 REMARK 3 T33: 0.1117 T12: -0.0098 REMARK 3 T13: 0.0039 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.6306 L22: 1.7030 REMARK 3 L33: 0.7562 L12: -0.9711 REMARK 3 L13: 0.0418 L23: 0.1228 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: 0.1165 S13: 0.1557 REMARK 3 S21: -0.1253 S22: -0.0508 S23: -0.0585 REMARK 3 S31: -0.0612 S32: 0.0025 S33: 0.0009 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 385 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8136 14.2994 -15.3415 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.2445 REMARK 3 T33: 0.1381 T12: -0.0026 REMARK 3 T13: 0.0244 T23: 0.0396 REMARK 3 L TENSOR REMARK 3 L11: 0.9047 L22: 1.0500 REMARK 3 L33: 1.5296 L12: 0.0145 REMARK 3 L13: 0.1399 L23: 0.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.3705 S13: -0.0797 REMARK 3 S21: 0.2170 S22: 0.0125 S23: 0.0552 REMARK 3 S31: -0.0231 S32: -0.1043 S33: 0.0227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : RIGAKU VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.491 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.84 REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 3LVM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ANATRACE/CALIBRE MCSG1 SCREEN, REMARK 280 CONDITION F7: 1M NAH2PO4 / K2HPO4 PH 5.6: REMARK 280 LEPNA.00081.A.B1.PS38430 AT 22.0MG/ML: TRAY: 300662 F7: CRYO: 25% REMARK 280 EG IN 2 STEPS + 2.5MM PLP: PUCK: KDY1-15, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.50500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.50500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 25.89225 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -69.59985 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 975 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ILE A 3 REMARK 465 THR A 326 REMARK 465 SER A 327 REMARK 465 ALA A 328 REMARK 465 CYS A 329 REMARK 465 SER A 330 REMARK 465 SER A 331 REMARK 465 ALA A 332 REMARK 465 SER A 333 REMARK 465 ILE A 334 REMARK 465 GLN A 335 REMARK 465 PRO A 336 REMARK 465 PRO A 386 REMARK 465 LEU A 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 HIS A 236 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 677 O HOH A 943 1.90 REMARK 500 O HOH A 504 O HOH A 602 1.91 REMARK 500 OE2 GLU A 294 O HOH A 501 1.93 REMARK 500 O HOH A 834 O HOH A 875 1.94 REMARK 500 O HOH A 588 O HOH A 961 2.00 REMARK 500 O HOH A 608 O HOH A 839 2.01 REMARK 500 O HOH A 897 O HOH A 937 2.01 REMARK 500 O HOH A 527 O HOH A 717 2.04 REMARK 500 OE1 GLU A 261 O HOH A 502 2.05 REMARK 500 O HOH A 678 O HOH A 877 2.14 REMARK 500 OE1 GLU A 139 O HOH A 503 2.15 REMARK 500 O HOH A 738 O HOH A 937 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 849 O HOH A 858 4444 1.87 REMARK 500 O HOH A 915 O HOH A 935 4444 2.13 REMARK 500 O HOH A 720 O HOH A 742 1565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 28 -70.81 -121.27 REMARK 500 LYS A 188 -50.55 -127.16 REMARK 500 HIS A 236 30.08 -143.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 979 DISTANCE = 5.85 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LEPNA.00081.A RELATED DB: TARGETTRACK DBREF 7MHV A 1 387 UNP Q5ZUP7 Q5ZUP7_LEGPH 1 387 SEQADV 7MHV MET A -7 UNP Q5ZUP7 INITIATING METHIONINE SEQADV 7MHV ALA A -6 UNP Q5ZUP7 EXPRESSION TAG SEQADV 7MHV HIS A -5 UNP Q5ZUP7 EXPRESSION TAG SEQADV 7MHV HIS A -4 UNP Q5ZUP7 EXPRESSION TAG SEQADV 7MHV HIS A -3 UNP Q5ZUP7 EXPRESSION TAG SEQADV 7MHV HIS A -2 UNP Q5ZUP7 EXPRESSION TAG SEQADV 7MHV HIS A -1 UNP Q5ZUP7 EXPRESSION TAG SEQADV 7MHV HIS A 0 UNP Q5ZUP7 EXPRESSION TAG SEQRES 1 A 395 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE LYS PRO SEQRES 2 A 395 ILE TYR PHE ASP TYR MET ALA THR THR PRO VAL ASP PRO SEQRES 3 A 395 ARG VAL VAL GLU GLN MET ILE LYS TYR LEU GLY PRO GLU SEQRES 4 A 395 GLY ASP PHE GLY ASN PRO ALA SER ALA THR HIS GLU TYR SEQRES 5 A 395 GLY ARG VAL ALA SER MET ALA VAL GLU GLN ALA ARG SER SEQRES 6 A 395 GLN ILE ALA GLU THR ILE ASN ALA SER PRO GLN GLU ILE SEQRES 7 A 395 VAL PHE THR SER GLY ALA THR GLU ALA ASP ASN LEU ALA SEQRES 8 A 395 ILE LEU GLY ALA ALA ARG PHE TYR LYS ASN LYS GLY MET SEQRES 9 A 395 HIS LEU VAL THR MET SER THR GLU HIS LYS ALA VAL LEU SEQRES 10 A 395 ASP SER PHE HIS GLN LEU GLU LYS GLU GLY PHE GLN VAL SEQRES 11 A 395 THR TYR LEU ASN PRO GLU SER ASP GLY LEU LEU ASP LEU SEQRES 12 A 395 GLU LYS LEU GLU SER ALA LEU ARG LEU ASP THR ILE LEU SEQRES 13 A 395 VAL SER VAL MET HIS VAL ASN ASN GLU ILE GLY VAL ILE SEQRES 14 A 395 GLN ASP ILE ALA SER ILE GLY GLU LEU LEU ARG ASN ARG SEQRES 15 A 395 GLY ILE ILE PHE HIS VAL ASP ALA ALA GLN SER ALA GLY SEQRES 16 A 395 LYS LEU PRO ILE ASP LEU SER GLN LEU SER VAL ASP LEU SEQRES 17 A 395 MET SER PHE SER ALA HIS LLP ASN TYR GLY PRO LYS GLY SEQRES 18 A 395 VAL GLY ALA LEU TYR VAL ARG HIS LYS PRO ARG ILE ARG SEQRES 19 A 395 LEU GLN PRO LEU SER TYR GLY GLY GLY HIS GLU GLY GLY SEQRES 20 A 395 LEU ARG SER GLY THR LEU PRO THR HIS GLN ILE VAL GLY SEQRES 21 A 395 MET GLY GLU ALA PHE ALA ILE ALA GLU ALA ASP ARG ILE SEQRES 22 A 395 PRO GLU GLN THR ARG ILE LEU ASN LEU ARG LYS GLN LEU SEQRES 23 A 395 TRP ASP GLY ILE ARG HIS LEU PRO ALA ILE LYS LEU ASN SEQRES 24 A 395 GLY HIS GLU HIS ARG ARG ILE ALA GLY ASN LEU ASN VAL SEQRES 25 A 395 SER PHE VAL GLY LEU ASN GLY ASP SER LEU LEU PHE ALA SEQRES 26 A 395 LEU SER GLU LEU ALA ILE SER THR THR SER ALA CYS SER SEQRES 27 A 395 SER ALA SER ILE GLN PRO SER TYR VAL LEU ARG ALA ILE SEQRES 28 A 395 GLY LEU THR ASP THR GLU ALA GLN SER THR ILE ARG LEU SEQRES 29 A 395 SER ILE GLY ARG PHE THR SER GLU VAL GLN ILE LYS LYS SEQRES 30 A 395 ALA ILE ASP ILE ILE CYS THR GLN VAL SER ARG LEU HIS SEQRES 31 A 395 GLU LEU SER PRO LEU MODRES 7MHV LLP A 207 LYS MODIFIED RESIDUE HET LLP A 207 24 HET EDO A 401 4 HET EDO A 402 4 HET PO4 A 403 5 HET PO4 A 404 5 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 HOH *479(H2 O) HELIX 1 AA1 ASP A 17 ILE A 25 1 9 HELIX 2 AA2 LYS A 26 LEU A 28 5 3 HELIX 3 AA3 HIS A 42 ASN A 64 1 23 HELIX 4 AA4 SER A 66 GLN A 68 5 3 HELIX 5 AA5 GLY A 75 LYS A 92 1 18 HELIX 6 AA6 ASN A 93 GLY A 95 5 3 HELIX 7 AA7 HIS A 105 GLU A 118 1 14 HELIX 8 AA8 ASP A 134 LEU A 142 1 9 HELIX 9 AA9 ASP A 163 ARG A 174 1 12 HELIX 10 AB1 HIS A 206 ASN A 208 5 3 HELIX 11 AB2 PRO A 246 ASP A 263 1 18 HELIX 12 AB3 ASP A 263 ARG A 283 1 21 HELIX 13 AB4 ASN A 310 LEU A 318 1 9 HELIX 14 AB5 TYR A 338 ILE A 343 1 6 HELIX 15 AB6 THR A 346 SER A 352 1 7 HELIX 16 AB7 SER A 363 LEU A 384 1 22 SHEET 1 AA1 2 ILE A 6 TYR A 7 0 SHEET 2 AA1 2 LEU A 321 ALA A 322 1 O ALA A 322 N ILE A 6 SHEET 1 AA2 7 ILE A 70 THR A 73 0 SHEET 2 AA2 7 GLY A 215 VAL A 219 -1 O LEU A 217 N VAL A 71 SHEET 3 AA2 7 LEU A 200 SER A 204 -1 N MET A 201 O TYR A 218 SHEET 4 AA2 7 ILE A 177 ASP A 181 1 N VAL A 180 O LEU A 200 SHEET 5 AA2 7 THR A 146 SER A 150 1 N VAL A 149 O HIS A 179 SHEET 6 AA2 7 HIS A 97 MET A 101 1 N HIS A 97 O ILE A 147 SHEET 7 AA2 7 GLN A 121 LEU A 125 1 O LEU A 125 N THR A 100 SHEET 1 AA3 3 ILE A 288 LEU A 290 0 SHEET 2 AA3 3 ASN A 301 PHE A 306 -1 O SER A 305 N LYS A 289 SHEET 3 AA3 3 THR A 353 SER A 357 -1 O LEU A 356 N LEU A 302 LINK C HIS A 206 N LLP A 207 1555 1555 1.34 LINK C LLP A 207 N ASN A 208 1555 1555 1.34 CISPEP 1 LYS A 222 PRO A 223 0 -7.57 CISPEP 2 GLY A 235 HIS A 236 0 6.29 CRYST1 129.010 51.170 74.260 90.00 110.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007751 0.000000 0.002884 0.00000 SCALE2 0.000000 0.019543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014368 0.00000