HEADER IMMUNE SYSTEM 19-APR-21 7MJA TITLE HLA-A*24:02 BOUND TO NEUROBLASTOMA DERIVED PHOX2B PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN A ALPHA CHAIN,HLA-A COMPND 5 PROTEIN,MHC CLASS I ANTIGEN,MHC CLASS I PROTEIN,MHC LEUKOCYTE COMPND 6 ANTIGEN,MAJOR HISTOCOMPATIBILITY COMPLEX,CLASS I,A; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 21-119; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PAIRED MESODERM HOMEOBOX PROTEIN 2B PEPTIDE; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: RESIDUES 43-51; COMPND 17 SYNONYM: NEUROBLASTOMA PHOX,NBPHOX,PHOX2B HOMEODOMAIN PROTEIN,PAIRED- COMPND 18 LIKE HOMEOBOX 2B; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLA, HLA-A*24 :02 VARIANT, HLA-A*24:02 VARIANT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS NEUROBLASTOMA TUMOR ANTIGEN, PHOX2B, IGFBPL1, HUMAN MAJOR KEYWDS 2 HISTOCOMPATIBILITY COMPLEX CLASS I, MHC-I, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.S.TOOR,S.M.TRIPATHI,H.V.TRUONG,M.YARMARKOVICH,J.M.MARIS, AUTHOR 2 N.G.SGOURAKIS REVDAT 4 18-OCT-23 7MJA 1 REMARK REVDAT 3 01-DEC-21 7MJA 1 JRNL REVDAT 2 10-NOV-21 7MJA 1 JRNL REVDAT 1 18-AUG-21 7MJA 0 JRNL AUTH M.YARMARKOVICH,Q.F.MARSHALL,J.M.WARRINGTON,R.PREMARATNE, JRNL AUTH 2 A.FARREL,D.GROFF,W.LI,M.DI MARCO,E.RUNBECK,H.TRUONG, JRNL AUTH 3 J.S.TOOR,S.TRIPATHI,S.NGUYEN,H.SHEN,T.NOEL,N.L.CHURCH, JRNL AUTH 4 A.WEINER,N.KENDSERSKY,D.MARTINEZ,R.WEISBERG,M.CHRISTIE, JRNL AUTH 5 L.EISENLOHR,K.R.BOSSE,D.S.DIMITROV,S.STEVANOVIC, JRNL AUTH 6 N.G.SGOURAKIS,B.R.KIEFEL,J.M.MARIS JRNL TITL CROSS-HLA TARGETING OF INTRACELLULAR ONCOPROTEINS WITH JRNL TITL 2 PEPTIDE-CENTRIC CARS. JRNL REF NATURE V. 599 477 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34732890 JRNL DOI 10.1038/S41586-021-04061-6 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.330 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.8000 - 4.0729 1.00 4473 154 0.1720 0.1905 REMARK 3 2 4.0729 - 3.2328 1.00 4249 147 0.1657 0.1900 REMARK 3 3 3.2328 - 2.8242 1.00 4208 144 0.1778 0.2017 REMARK 3 4 2.8242 - 2.5660 1.00 4153 143 0.1775 0.1770 REMARK 3 5 2.5660 - 2.3820 1.00 4151 143 0.1774 0.2277 REMARK 3 6 2.3820 - 2.2416 1.00 4119 143 0.1779 0.2020 REMARK 3 7 2.2416 - 2.1293 1.00 4132 141 0.1732 0.1820 REMARK 3 8 2.1293 - 2.0366 1.00 4085 141 0.1751 0.1829 REMARK 3 9 2.0366 - 1.9582 1.00 4111 142 0.1658 0.2117 REMARK 3 10 1.9582 - 1.8906 1.00 4070 140 0.1731 0.2026 REMARK 3 11 1.8906 - 1.8315 1.00 4095 141 0.1854 0.2376 REMARK 3 12 1.8315 - 1.7792 1.00 4075 140 0.1926 0.2431 REMARK 3 13 1.7792 - 1.7323 1.00 4070 141 0.1936 0.2536 REMARK 3 14 1.7323 - 1.6901 1.00 4069 140 0.1945 0.2296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3220 REMARK 3 ANGLE : 1.228 4362 REMARK 3 CHIRALITY : 0.058 443 REMARK 3 PLANARITY : 0.007 574 REMARK 3 DIHEDRAL : 6.638 1908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2360 35.1713 195.3518 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.1613 REMARK 3 T33: 0.1984 T12: -0.0441 REMARK 3 T13: 0.0067 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.7526 L22: 2.0728 REMARK 3 L33: 2.4801 L12: -0.4070 REMARK 3 L13: -0.2636 L23: 0.9938 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.0800 S13: -0.0903 REMARK 3 S21: 0.1053 S22: -0.1746 S23: 0.2177 REMARK 3 S31: 0.1737 S32: -0.2891 S33: 0.1083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5690 33.0453 207.1912 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.1420 REMARK 3 T33: 0.1909 T12: -0.0696 REMARK 3 T13: 0.0471 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.2393 L22: 4.4554 REMARK 3 L33: 3.1270 L12: 1.5020 REMARK 3 L13: 1.0030 L23: 3.6053 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0500 S13: -0.1018 REMARK 3 S21: 0.7240 S22: -0.1221 S23: 0.1539 REMARK 3 S31: 0.8052 S32: -0.3183 S33: 0.2063 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3599 41.1414 203.4697 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.1630 REMARK 3 T33: 0.2119 T12: -0.0166 REMARK 3 T13: -0.0129 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.3107 L22: 3.7650 REMARK 3 L33: 3.6723 L12: -2.5749 REMARK 3 L13: -2.5074 L23: 2.9031 REMARK 3 S TENSOR REMARK 3 S11: 0.2152 S12: -0.0203 S13: 0.1394 REMARK 3 S21: 0.0450 S22: 0.0106 S23: -0.2582 REMARK 3 S31: -0.0120 S32: 0.1244 S33: -0.2662 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8945 43.1547 212.4558 REMARK 3 T TENSOR REMARK 3 T11: 0.2318 T22: 0.1971 REMARK 3 T33: 0.2531 T12: -0.0156 REMARK 3 T13: -0.1046 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 1.6222 L22: 3.2117 REMARK 3 L33: 1.7003 L12: -0.5766 REMARK 3 L13: -0.2501 L23: 0.6122 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.1634 S13: 0.0052 REMARK 3 S21: 0.5542 S22: 0.1132 S23: -0.4982 REMARK 3 S31: 0.0276 S32: 0.4425 S33: -0.1608 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4181 38.6037 185.1956 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1496 REMARK 3 T33: 0.1712 T12: 0.0038 REMARK 3 T13: 0.0058 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.5328 L22: 2.0130 REMARK 3 L33: 0.2672 L12: -0.2125 REMARK 3 L13: 0.1005 L23: 0.7318 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.0385 S13: -0.0006 REMARK 3 S21: -0.3741 S22: -0.0772 S23: -0.1424 REMARK 3 S31: 0.1747 S32: 0.1377 S33: 0.0959 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2742 56.4995 172.6612 REMARK 3 T TENSOR REMARK 3 T11: 0.4589 T22: 0.1709 REMARK 3 T33: 0.1976 T12: 0.0018 REMARK 3 T13: 0.0714 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.7883 L22: 2.1101 REMARK 3 L33: 0.7258 L12: 0.2185 REMARK 3 L13: 0.0975 L23: -0.6498 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.1452 S13: 0.0536 REMARK 3 S21: -0.6683 S22: -0.0679 S23: -0.2284 REMARK 3 S31: -0.1558 S32: 0.1053 S33: 0.0819 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1843 56.1588 190.0079 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.1482 REMARK 3 T33: 0.2130 T12: 0.0224 REMARK 3 T13: -0.0174 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.3022 L22: 3.0284 REMARK 3 L33: 3.3385 L12: 0.6746 REMARK 3 L13: 0.9789 L23: 2.9126 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: -0.0042 S13: 0.0385 REMARK 3 S21: -0.3534 S22: -0.2154 S23: 0.2071 REMARK 3 S31: -0.5007 S32: -0.0758 S33: 0.2464 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4601 48.6435 168.3722 REMARK 3 T TENSOR REMARK 3 T11: 0.7057 T22: 0.3841 REMARK 3 T33: 0.2355 T12: 0.1513 REMARK 3 T13: -0.2344 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.4389 L22: 0.5289 REMARK 3 L33: 0.0946 L12: -0.7354 REMARK 3 L13: 0.3429 L23: -0.1767 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.4907 S13: 0.0260 REMARK 3 S21: -0.5804 S22: 0.0622 S23: 0.2620 REMARK 3 S31: 0.1760 S32: -0.4633 S33: -0.1094 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4273 49.9887 183.1109 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.1689 REMARK 3 T33: 0.2540 T12: 0.0532 REMARK 3 T13: -0.0785 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 2.2439 L22: 1.6842 REMARK 3 L33: 6.0202 L12: 0.4960 REMARK 3 L13: 1.2511 L23: 0.8854 REMARK 3 S TENSOR REMARK 3 S11: 0.2001 S12: 0.2019 S13: -0.0865 REMARK 3 S21: -0.3743 S22: -0.0808 S23: 0.3480 REMARK 3 S31: 0.2025 S32: -0.1176 S33: -0.0174 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8594 53.4658 188.7805 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.2952 REMARK 3 T33: 0.3546 T12: 0.0819 REMARK 3 T13: -0.0736 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 6.0387 L22: 0.9135 REMARK 3 L33: 7.8131 L12: -0.5322 REMARK 3 L13: 6.4781 L23: -1.4405 REMARK 3 S TENSOR REMARK 3 S11: 0.1858 S12: -0.0591 S13: 0.0055 REMARK 3 S21: -0.1173 S22: -0.0607 S23: 0.5705 REMARK 3 S31: -0.1336 S32: -0.6744 S33: -0.1487 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7074 44.3234 185.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.2058 T22: 0.3838 REMARK 3 T33: 0.5143 T12: -0.0349 REMARK 3 T13: -0.1678 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 2.4441 L22: 0.2617 REMARK 3 L33: 6.1879 L12: 0.3943 REMARK 3 L13: 1.8240 L23: -0.6822 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: 0.6009 S13: -0.6814 REMARK 3 S21: -0.4822 S22: 0.1113 S23: 0.8949 REMARK 3 S31: 0.0320 S32: -0.7086 S33: -0.1215 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0866 46.6168 189.4050 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.1420 REMARK 3 T33: 0.1865 T12: 0.0016 REMARK 3 T13: -0.0234 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.6083 L22: 2.4484 REMARK 3 L33: 5.2973 L12: -0.1358 REMARK 3 L13: 0.9034 L23: -0.3732 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: 0.1919 S13: -0.0998 REMARK 3 S21: -0.3130 S22: 0.0411 S23: 0.2456 REMARK 3 S31: -0.0392 S32: 0.0098 S33: -0.1446 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6345 57.0237 177.7296 REMARK 3 T TENSOR REMARK 3 T11: 0.4956 T22: 0.3336 REMARK 3 T33: 0.4243 T12: 0.1709 REMARK 3 T13: -0.2101 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.0138 L22: 0.2793 REMARK 3 L33: 7.0701 L12: 0.7248 REMARK 3 L13: 0.6595 L23: -0.1135 REMARK 3 S TENSOR REMARK 3 S11: 0.1758 S12: 0.1386 S13: 0.3444 REMARK 3 S21: -0.4902 S22: 0.0906 S23: 0.4963 REMARK 3 S31: -0.2347 S32: -0.6044 S33: -0.1403 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4850 61.6265 196.9537 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.2393 REMARK 3 T33: 0.3755 T12: 0.0710 REMARK 3 T13: 0.0128 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 5.2418 L22: 2.2305 REMARK 3 L33: 6.4247 L12: 0.9352 REMARK 3 L13: 2.0426 L23: 3.5958 REMARK 3 S TENSOR REMARK 3 S11: -0.0886 S12: 0.0517 S13: 0.9095 REMARK 3 S21: -0.1138 S22: -0.2435 S23: 0.2825 REMARK 3 S31: -0.5872 S32: -0.3183 S33: 0.1277 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6229 59.6948 177.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.4196 T22: 0.1943 REMARK 3 T33: 0.2944 T12: 0.0935 REMARK 3 T13: -0.1169 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.7101 L22: 4.9409 REMARK 3 L33: 6.8649 L12: -0.9173 REMARK 3 L13: -3.2639 L23: 0.7540 REMARK 3 S TENSOR REMARK 3 S11: 0.2108 S12: 0.4080 S13: 0.2541 REMARK 3 S21: -0.6770 S22: -0.0218 S23: 0.3617 REMARK 3 S31: -0.5365 S32: -0.2807 S33: -0.1392 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2464 31.8577 207.4481 REMARK 3 T TENSOR REMARK 3 T11: 0.3132 T22: 0.1571 REMARK 3 T33: 0.1646 T12: 0.0208 REMARK 3 T13: -0.0143 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 1.5137 L22: 4.4820 REMARK 3 L33: 2.4014 L12: 0.1715 REMARK 3 L13: 0.3910 L23: 3.2061 REMARK 3 S TENSOR REMARK 3 S11: -0.1295 S12: -0.0735 S13: 0.0505 REMARK 3 S21: 0.8762 S22: 0.2249 S23: -0.0288 REMARK 3 S31: 0.7942 S32: -0.0154 S33: -0.0568 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MJA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60180 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 87.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.70 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VXN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, 10% PEG 6000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.60550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.60550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.71750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.60550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.60550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.15250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.60550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.60550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.71750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.60550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.60550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 131.15250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 GLU A 276 REMARK 465 PRO A 277 REMARK 465 SER A 278 REMARK 465 SER A 279 REMARK 465 GLN A 280 REMARK 465 PRO A 281 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 66.09 -150.98 REMARK 500 ASP A 30 -128.08 49.19 REMARK 500 HIS A 115 97.69 -162.63 REMARK 500 TYR A 124 -66.46 -108.59 REMARK 500 TRP B 61 1.06 80.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 7MJA A 2 281 UNP Q95J06 Q95J06_HUMAN 25 304 DBREF 7MJA B 2 100 UNP P61769 B2MG_HUMAN 21 119 DBREF 7MJA C 1 9 UNP Q99453 PHX2B_HUMAN 43 51 SEQADV 7MJA MET A -1 UNP Q95J06 INITIATING METHIONINE SEQADV 7MJA ALA A 0 UNP Q95J06 EXPRESSION TAG SEQADV 7MJA SER A 1 UNP Q95J06 EXPRESSION TAG SEQADV 7MJA MET B 1 UNP P61769 INITIATING METHIONINE SEQRES 1 A 283 MET ALA SER GLY SER HIS SER MET ARG TYR PHE SER THR SEQRES 2 A 283 SER VAL SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SEQRES 3 A 283 ALA VAL GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE SEQRES 4 A 283 ASP SER ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA SEQRES 5 A 283 PRO TRP ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU SEQRES 6 A 283 GLU THR GLY LYS VAL LYS ALA HIS SER GLN THR ASP ARG SEQRES 7 A 283 GLU ASN LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER SEQRES 8 A 283 GLU ALA GLY SER HIS THR LEU GLN MET MET PHE GLY CYS SEQRES 9 A 283 ASP VAL GLY SER ASP GLY ARG PHE LEU ARG GLY TYR HIS SEQRES 10 A 283 GLN TYR ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS SEQRES 11 A 283 GLU ASP LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA SEQRES 12 A 283 GLN ILE THR LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA SEQRES 13 A 283 GLU GLN GLN ARG ALA TYR LEU GLU GLY THR CYS VAL ASP SEQRES 14 A 283 GLY LEU ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU SEQRES 15 A 283 GLN ARG THR ASP PRO PRO LYS THR HIS MET THR HIS HIS SEQRES 16 A 283 PRO ILE SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA SEQRES 17 A 283 LEU GLY PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN SEQRES 18 A 283 ARG ASP GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL SEQRES 19 A 283 GLU THR ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP SEQRES 20 A 283 ALA ALA VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR SEQRES 21 A 283 THR CYS HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU SEQRES 22 A 283 THR LEU ARG TRP GLU PRO SER SER GLN PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 GLN TYR ASN PRO ILE ARG THR THR PHE HET GOL A 301 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *368(H2 O) HELIX 1 AA1 ALA A 50 GLU A 54 5 5 HELIX 2 AA2 GLY A 57 TYR A 86 1 30 HELIX 3 AA3 ASP A 138 ALA A 151 1 14 HELIX 4 AA4 HIS A 152 GLY A 163 1 12 HELIX 5 AA5 GLY A 163 GLY A 176 1 14 HELIX 6 AA6 GLY A 176 GLN A 181 1 6 HELIX 7 AA7 GLU A 254 GLN A 256 5 3 SHEET 1 AA1 8 GLU A 47 PRO A 48 0 SHEET 2 AA1 8 THR A 32 ASP A 38 -1 N ARG A 36 O GLU A 47 SHEET 3 AA1 8 ARG A 22 VAL A 29 -1 N GLY A 27 O PHE A 34 SHEET 4 AA1 8 HIS A 4 VAL A 13 -1 N ARG A 7 O TYR A 28 SHEET 5 AA1 8 THR A 95 VAL A 104 -1 O LEU A 96 N SER A 12 SHEET 6 AA1 8 PHE A 110 TYR A 119 -1 O ALA A 118 N GLN A 97 SHEET 7 AA1 8 LYS A 122 LEU A 127 -1 O ILE A 125 N TYR A 117 SHEET 8 AA1 8 TRP A 134 ALA A 136 -1 O THR A 135 N ALA A 126 SHEET 1 AA2 4 LYS A 187 PRO A 194 0 SHEET 2 AA2 4 GLU A 199 PHE A 209 -1 O THR A 201 N HIS A 193 SHEET 3 AA2 4 PHE A 242 PRO A 251 -1 O ALA A 246 N CYS A 204 SHEET 4 AA2 4 THR A 229 LEU A 231 -1 N GLU A 230 O ALA A 247 SHEET 1 AA3 4 LYS A 187 PRO A 194 0 SHEET 2 AA3 4 GLU A 199 PHE A 209 -1 O THR A 201 N HIS A 193 SHEET 3 AA3 4 PHE A 242 PRO A 251 -1 O ALA A 246 N CYS A 204 SHEET 4 AA3 4 ARG A 235 PRO A 236 -1 N ARG A 235 O GLN A 243 SHEET 1 AA4 4 GLU A 223 GLN A 225 0 SHEET 2 AA4 4 THR A 215 ARG A 220 -1 N ARG A 220 O GLU A 223 SHEET 3 AA4 4 TYR A 258 GLN A 263 -1 O HIS A 261 N THR A 217 SHEET 4 AA4 4 LEU A 271 LEU A 273 -1 O LEU A 273 N CYS A 260 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O TYR B 67 N CYS B 26 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O TYR B 67 N CYS B 26 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ALA B 80 N LEU B 41 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O LYS B 92 N VAL B 83 SSBOND 1 CYS A 102 CYS A 165 1555 1555 2.10 SSBOND 2 CYS A 204 CYS A 260 1555 1555 2.07 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.03 CISPEP 1 TYR A 210 PRO A 211 0 1.45 CISPEP 2 HIS B 32 PRO B 33 0 -2.71 CRYST1 77.211 77.211 174.870 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005719 0.00000