HEADER OXIDOREDUCTASE 19-APR-21 7MJB TITLE CRYSTAL STRUCTURE OF NANOLUC LUCIFERASE MUTANT R164Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOLUC LUCIFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.12.13; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OPLOPHORUS GRACILIROSTRIS; SOURCE 3 ORGANISM_TAXID: 727944; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28A KEYWDS BIOLUMINESCENT PROTEIN, NANOLUC LUCIFERASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.G.SHABALIN,M.S.REZA,H.AI,W.MINOR REVDAT 2 18-OCT-23 7MJB 1 REMARK REVDAT 1 05-MAY-21 7MJB 0 JRNL AUTH I.G.SHABALIN,M.S.REZA,H.AI,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF NANOLUC LUCIFERASE MUTANT R164Q JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 35957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.564 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2762 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2661 ; 0.005 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3758 ; 1.352 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6109 ; 1.360 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 350 ; 7.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;32.094 ;23.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 449 ;12.399 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3143 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 625 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 171 B 1 171 4963 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5780 14.4180 34.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.0843 T22: 0.0838 REMARK 3 T33: 0.0537 T12: -0.0050 REMARK 3 T13: -0.0271 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 2.0009 L22: 3.5563 REMARK 3 L33: 2.9847 L12: 1.1064 REMARK 3 L13: 0.1212 L23: 0.7694 REMARK 3 S TENSOR REMARK 3 S11: -0.2863 S12: 0.1158 S13: 0.1859 REMARK 3 S21: -0.4619 S22: 0.1327 S23: -0.0468 REMARK 3 S31: -0.2486 S32: -0.0419 S33: 0.1535 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1350 9.6080 38.1200 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.0935 REMARK 3 T33: 0.0288 T12: -0.0045 REMARK 3 T13: -0.0015 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 5.9057 L22: 2.1599 REMARK 3 L33: 1.9691 L12: 1.5651 REMARK 3 L13: -0.7499 L23: 0.3772 REMARK 3 S TENSOR REMARK 3 S11: -0.2446 S12: 0.0582 S13: 0.0399 REMARK 3 S21: -0.2025 S22: 0.1873 S23: -0.0777 REMARK 3 S31: -0.0398 S32: 0.2402 S33: 0.0574 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2600 2.5420 33.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.0220 T22: 0.1532 REMARK 3 T33: 0.1271 T12: -0.0206 REMARK 3 T13: 0.0411 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.9882 L22: 8.7346 REMARK 3 L33: 3.4105 L12: -0.0872 REMARK 3 L13: 0.0352 L23: 2.2451 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: -0.1242 S13: -0.0226 REMARK 3 S21: -0.2048 S22: 0.2560 S23: -0.9638 REMARK 3 S31: -0.0146 S32: 0.5258 S33: -0.1879 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3920 16.6260 47.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.1635 REMARK 3 T33: 0.0688 T12: -0.0003 REMARK 3 T13: -0.0150 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 4.4141 L22: 1.5773 REMARK 3 L33: 1.2715 L12: 0.3897 REMARK 3 L13: -0.4364 L23: 0.3795 REMARK 3 S TENSOR REMARK 3 S11: -0.1276 S12: -0.1445 S13: 0.2456 REMARK 3 S21: 0.0862 S22: 0.1284 S23: -0.0860 REMARK 3 S31: -0.0925 S32: 0.0991 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5140 16.5240 34.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0837 REMARK 3 T33: 0.0629 T12: -0.0071 REMARK 3 T13: -0.0106 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.8953 L22: 7.0021 REMARK 3 L33: 3.0700 L12: 3.1091 REMARK 3 L13: 1.3010 L23: 2.1933 REMARK 3 S TENSOR REMARK 3 S11: -0.1506 S12: -0.0359 S13: 0.2443 REMARK 3 S21: -0.4942 S22: 0.0628 S23: 0.1576 REMARK 3 S31: -0.2769 S32: -0.0234 S33: 0.0878 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4520 4.1660 13.5020 REMARK 3 T TENSOR REMARK 3 T11: 0.3457 T22: 0.1016 REMARK 3 T33: 0.0661 T12: -0.0062 REMARK 3 T13: 0.0383 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 4.5162 L22: 5.3673 REMARK 3 L33: 7.6775 L12: 1.4599 REMARK 3 L13: 0.1601 L23: 2.5809 REMARK 3 S TENSOR REMARK 3 S11: -0.0888 S12: 0.0676 S13: 0.1903 REMARK 3 S21: -0.6147 S22: -0.0350 S23: -0.3198 REMARK 3 S31: -0.2717 S32: 0.3257 S33: 0.1238 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 58 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7600 7.3250 9.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.4556 T22: 0.1782 REMARK 3 T33: 0.0532 T12: -0.0268 REMARK 3 T13: 0.0140 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.7261 L22: 7.5603 REMARK 3 L33: 8.7608 L12: -1.4494 REMARK 3 L13: -2.5150 L23: 3.0618 REMARK 3 S TENSOR REMARK 3 S11: 0.1687 S12: 0.0698 S13: 0.2746 REMARK 3 S21: -0.8222 S22: -0.0152 S23: -0.0635 REMARK 3 S31: -0.3590 S32: -0.0450 S33: -0.1534 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9890 18.3270 15.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.1647 REMARK 3 T33: 0.1941 T12: -0.0115 REMARK 3 T13: -0.0643 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 8.4351 L22: 5.5444 REMARK 3 L33: 5.9218 L12: 0.3571 REMARK 3 L13: -1.9615 L23: 0.9464 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.2071 S13: 1.2231 REMARK 3 S21: -0.6267 S22: 0.0282 S23: 0.2531 REMARK 3 S31: -0.7745 S32: 0.0537 S33: -0.0851 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0620 10.5090 0.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.7757 T22: 0.2391 REMARK 3 T33: 0.0938 T12: -0.0344 REMARK 3 T13: 0.1285 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 5.5586 L22: 5.9665 REMARK 3 L33: 10.4535 L12: -3.6173 REMARK 3 L13: -6.4155 L23: 7.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.3074 S12: 0.0305 S13: 0.3343 REMARK 3 S21: -1.1081 S22: 0.1858 S23: -0.4190 REMARK 3 S31: -0.6031 S32: 0.1730 S33: -0.4931 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 117 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6530 5.7230 8.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.5513 T22: 0.2065 REMARK 3 T33: 0.1504 T12: -0.0588 REMARK 3 T13: 0.1742 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.5690 L22: 5.6214 REMARK 3 L33: 6.1988 L12: 0.5574 REMARK 3 L13: -1.1187 L23: -0.7560 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.0009 S13: 0.0391 REMARK 3 S21: -1.0684 S22: -0.0743 S23: -0.7494 REMARK 3 S31: -0.3640 S32: 0.6515 S33: 0.1103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7MJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) ROSENBAUM-ROCK DOUBLE REMARK 200 -CRYSTAL MONOCHROMATOR: LIQUID REMARK 200 NITROGEN COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 1.11400 REMARK 200 R SYM FOR SHELL (I) : 1.11400 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5IBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 0.2 UL OF 9 MG/ML IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE AND REMARK 280 0.5 MM TCEP. PRECIPITANT: 0.2UL 0.2M NA NITRATE, 20%W/V PEG 3350 REMARK 280 (MCSG SUITE 2 #34). CRYO-PROTECTION: AIR-DRYING (SLOW REMARK 280 DEHYDRATION), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.09000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.02250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.02250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 VAL B 29 REMARK 465 SER B 30 REMARK 465 SER B 31 REMARK 465 LEU B 32 REMARK 465 PHE B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 GLN B 34 CG CD OE1 NE2 REMARK 470 ASN B 35 CG OD1 ND2 REMARK 470 LEU B 36 CG CD1 CD2 REMARK 470 ASP B 70 CG OD1 OD2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 80 -37.45 72.39 REMARK 500 VAL A 104 -45.01 -133.18 REMARK 500 ASN B 35 -70.87 -78.50 REMARK 500 LYS B 80 -45.16 75.22 REMARK 500 VAL B 104 -43.74 -135.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DKA B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DKA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DKA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 202 DBREF 7MJB A -12 171 PDB 7MJB 7MJB -12 171 DBREF 7MJB B -12 171 PDB 7MJB 7MJB -12 171 SEQRES 1 A 184 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 184 MET VAL PHE THR LEU GLU ASP PHE VAL GLY ASP TRP ARG SEQRES 3 A 184 GLN THR ALA GLY TYR ASN LEU ASP GLN VAL LEU GLU GLN SEQRES 4 A 184 GLY GLY VAL SER SER LEU PHE GLN ASN LEU GLY VAL SER SEQRES 5 A 184 VAL THR PRO ILE GLN ARG ILE VAL LEU SER GLY GLU ASN SEQRES 6 A 184 GLY LEU LYS ILE ASP ILE HIS VAL ILE ILE PRO TYR GLU SEQRES 7 A 184 GLY LEU SER GLY ASP GLN MET GLY GLN ILE GLU LYS ILE SEQRES 8 A 184 PHE LYS VAL VAL TYR PRO VAL ASP ASP HIS HIS PHE LYS SEQRES 9 A 184 VAL ILE LEU HIS TYR GLY THR LEU VAL ILE ASP GLY VAL SEQRES 10 A 184 THR PRO ASN MET ILE ASP TYR PHE GLY ARG PRO TYR GLU SEQRES 11 A 184 GLY ILE ALA VAL PHE ASP GLY LYS LYS ILE THR VAL THR SEQRES 12 A 184 GLY THR LEU TRP ASN GLY ASN LYS ILE ILE ASP GLU ARG SEQRES 13 A 184 LEU ILE ASN PRO ASP GLY SER LEU LEU PHE ARG VAL THR SEQRES 14 A 184 ILE ASN GLY VAL THR GLY TRP GLN LEU CYS GLU ARG ILE SEQRES 15 A 184 LEU ALA SEQRES 1 B 184 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 184 MET VAL PHE THR LEU GLU ASP PHE VAL GLY ASP TRP ARG SEQRES 3 B 184 GLN THR ALA GLY TYR ASN LEU ASP GLN VAL LEU GLU GLN SEQRES 4 B 184 GLY GLY VAL SER SER LEU PHE GLN ASN LEU GLY VAL SER SEQRES 5 B 184 VAL THR PRO ILE GLN ARG ILE VAL LEU SER GLY GLU ASN SEQRES 6 B 184 GLY LEU LYS ILE ASP ILE HIS VAL ILE ILE PRO TYR GLU SEQRES 7 B 184 GLY LEU SER GLY ASP GLN MET GLY GLN ILE GLU LYS ILE SEQRES 8 B 184 PHE LYS VAL VAL TYR PRO VAL ASP ASP HIS HIS PHE LYS SEQRES 9 B 184 VAL ILE LEU HIS TYR GLY THR LEU VAL ILE ASP GLY VAL SEQRES 10 B 184 THR PRO ASN MET ILE ASP TYR PHE GLY ARG PRO TYR GLU SEQRES 11 B 184 GLY ILE ALA VAL PHE ASP GLY LYS LYS ILE THR VAL THR SEQRES 12 B 184 GLY THR LEU TRP ASN GLY ASN LYS ILE ILE ASP GLU ARG SEQRES 13 B 184 LEU ILE ASN PRO ASP GLY SER LEU LEU PHE ARG VAL THR SEQRES 14 B 184 ILE ASN GLY VAL THR GLY TRP GLN LEU CYS GLU ARG ILE SEQRES 15 B 184 LEU ALA HET DKA A 201 12 HET NO3 A 202 4 HET NO3 A 203 4 HET PEG A 204 7 HET CL A 205 1 HET DKA B 201 11 HET NO3 B 202 4 HETNAM DKA DECANOIC ACID HETNAM NO3 NITRATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION FORMUL 3 DKA 2(C10 H20 O2) FORMUL 4 NO3 3(N O3 1-) FORMUL 6 PEG C4 H10 O3 FORMUL 7 CL CL 1- FORMUL 10 HOH *273(H2 O) HELIX 1 AA1 THR A 4 VAL A 9 5 6 HELIX 2 AA2 ASN A 19 GLU A 25 1 7 HELIX 3 AA3 GLY A 27 LEU A 36 1 10 HELIX 4 AA4 GLU A 65 LEU A 67 5 3 HELIX 5 AA5 SER A 68 LYS A 80 1 13 HELIX 6 AA6 THR B 4 VAL B 9 5 6 HELIX 7 AA7 ASN B 19 GLY B 27 1 9 HELIX 8 AA8 GLU B 65 LEU B 67 5 3 HELIX 9 AA9 SER B 68 LYS B 80 1 13 SHEET 1 AA1 6 TYR A 83 ASP A 86 0 SHEET 2 AA1 6 HIS A 89 VAL A 100 -1 O LYS A 91 N TYR A 83 SHEET 3 AA1 6 GLY A 53 PRO A 63 -1 N LEU A 54 O LEU A 99 SHEET 4 AA1 6 ILE A 43 SER A 49 -1 N ARG A 45 O ASP A 57 SHEET 5 AA1 6 GLY A 10 TYR A 18 -1 N TRP A 12 O GLN A 44 SHEET 6 AA1 6 VAL B 38 SER B 39 -1 O SER B 39 N GLY A 17 SHEET 1 AA210 TYR A 83 ASP A 86 0 SHEET 2 AA210 HIS A 89 VAL A 100 -1 O LYS A 91 N TYR A 83 SHEET 3 AA210 ASN A 107 TYR A 111 -1 O ASP A 110 N TYR A 96 SHEET 4 AA210 ARG A 114 PHE A 122 -1 O TYR A 116 N ILE A 109 SHEET 5 AA210 LYS A 126 THR A 132 -1 O THR A 130 N ILE A 119 SHEET 6 AA210 LYS A 138 ILE A 145 -1 O ASP A 141 N VAL A 129 SHEET 7 AA210 LEU A 151 ILE A 157 -1 O THR A 156 N ILE A 140 SHEET 8 AA210 VAL A 160 ARG A 168 -1 O CYS A 166 N LEU A 151 SHEET 9 AA210 GLY A 10 TYR A 18 -1 N THR A 15 O LEU A 165 SHEET 10 AA210 VAL B 38 SER B 39 -1 O SER B 39 N GLY A 17 SHEET 1 AA3 6 VAL A 38 SER A 39 0 SHEET 2 AA3 6 GLY B 10 TYR B 18 -1 O GLY B 17 N SER A 39 SHEET 3 AA3 6 ILE B 43 LEU B 48 -1 O GLN B 44 N TRP B 12 SHEET 4 AA3 6 GLY B 53 PRO B 63 -1 O ASP B 57 N ARG B 45 SHEET 5 AA3 6 HIS B 89 VAL B 100 -1 O LEU B 99 N LEU B 54 SHEET 6 AA3 6 TYR B 83 ASP B 86 -1 N TYR B 83 O LYS B 91 SHEET 1 AA410 VAL A 38 SER A 39 0 SHEET 2 AA410 GLY B 10 TYR B 18 -1 O GLY B 17 N SER A 39 SHEET 3 AA410 VAL B 160 ARG B 168 -1 O LEU B 165 N THR B 15 SHEET 4 AA410 LEU B 151 ILE B 157 -1 N LEU B 151 O CYS B 166 SHEET 5 AA410 LYS B 138 ILE B 145 -1 N ILE B 140 O THR B 156 SHEET 6 AA410 LYS B 126 THR B 132 -1 N VAL B 129 O ASP B 141 SHEET 7 AA410 ARG B 114 PHE B 122 -1 N ILE B 119 O THR B 130 SHEET 8 AA410 ASN B 107 TYR B 111 -1 N ILE B 109 O TYR B 116 SHEET 9 AA410 HIS B 89 VAL B 100 -1 N TYR B 96 O ASP B 110 SHEET 10 AA410 TYR B 83 ASP B 86 -1 N TYR B 83 O LYS B 91 SITE 1 AC1 9 GLU A 6 VAL A 9 ARG A 45 PRO A 84 SITE 2 AC1 9 VAL A 85 LYS A 91 ARG A 168 HOH A 345 SITE 3 AC1 9 HOH A 354 SITE 1 AC2 7 ILE A 56 HIS A 95 LEU A 99 TYR A 116 SITE 2 AC2 7 VAL A 129 ASP A 141 ARG A 143 SITE 1 AC3 6 GLY A 27 GLY A 28 VAL A 29 SER A 30 SITE 2 AC3 6 TYR A 111 TRP A 134 SITE 1 AC4 3 GLU A 6 TYR A 96 HOH A 304 SITE 1 AC5 4 LEU A 48 LYS A 55 TYR A 96 HOH A 321 SITE 1 AC6 9 GLU B 6 VAL B 9 ARG B 45 PRO B 84 SITE 2 AC6 9 VAL B 85 LYS B 91 ARG B 168 HOH B 320 SITE 3 AC6 9 HOH B 339 SITE 1 AC7 7 HIS B 95 LEU B 99 ILE B 109 TYR B 116 SITE 2 AC7 7 VAL B 129 ASP B 141 ARG B 143 CRYST1 60.180 62.045 97.304 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010277 0.00000