HEADER TOXIN 20-APR-21 7MJR TITLE VIP4DA2 TOXIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIP4DA1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THURINGIENSIS; SOURCE 3 ORGANISM_TAXID: 1428; SOURCE 4 GENE: VIP4DA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS VEGETATIVE INSECTICIDAL PROTEIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.J.RYDEL,D.DUDA,M.ZHENG,A.HENRY REVDAT 3 03-APR-24 7MJR 1 REMARK REVDAT 2 05-JAN-22 7MJR 1 JRNL REVDAT 1 05-MAY-21 7MJR 0 JRNL AUTH J.L.KOUADIO,M.ZHENG,M.AIKINS,D.DUDA,S.DUFF,D.CHEN,J.ZHANG, JRNL AUTH 2 J.MILLIGAN,C.TAYLOR,P.MAMANELLA,T.RYDEL,C.KESSENICH, JRNL AUTH 3 T.PANOSIAN,Y.YIN,W.MOAR,K.GIDDINGS,Y.PARK,A.JERGA,J.HAAS JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE FIRST BACILLUS JRNL TITL 2 THURINGIENSIS VEGETATIVE INSECTICIDAL PROTEIN OF THE VPB4 JRNL TITL 3 FOLD, ACTIVE AGAINST WESTERN CORN ROOTWORM. JRNL REF PLOS ONE V. 16 60532 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 34928980 JRNL DOI 10.1371/JOURNAL.PONE.0260532 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 30714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0500 - 7.7600 0.99 2296 159 0.1855 0.1903 REMARK 3 2 7.7600 - 6.1600 1.00 2228 151 0.1950 0.2424 REMARK 3 3 6.1600 - 5.3900 1.00 2207 148 0.1826 0.2375 REMARK 3 4 5.3900 - 4.8900 1.00 2190 142 0.1729 0.2167 REMARK 3 5 4.8900 - 4.5400 0.99 2169 155 0.1652 0.2006 REMARK 3 6 4.5400 - 4.2800 0.99 2184 131 0.1733 0.2319 REMARK 3 7 4.2800 - 4.0600 0.98 2125 147 0.1907 0.2694 REMARK 3 8 4.0600 - 3.8900 0.98 2118 151 0.2016 0.2545 REMARK 3 9 3.8900 - 3.7400 0.96 2097 137 0.2155 0.3057 REMARK 3 10 3.7400 - 3.6100 0.95 2047 130 0.2275 0.3238 REMARK 3 11 3.6100 - 3.4900 0.93 2032 124 0.2578 0.3000 REMARK 3 12 3.4900 - 3.3900 0.91 1987 144 0.2553 0.3370 REMARK 3 13 3.3900 - 3.3000 0.89 1903 126 0.2743 0.3576 REMARK 3 14 3.3000 - 3.2200 0.55 1205 81 0.2906 0.2870 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.379 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7320 REMARK 3 ANGLE : 1.307 9927 REMARK 3 CHIRALITY : 0.067 1074 REMARK 3 PLANARITY : 0.007 1274 REMARK 3 DIHEDRAL : 8.259 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31927 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.220 REMARK 200 RESOLUTION RANGE LOW (A) : 43.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.07700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: VIP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED IN 0.1 M BIS REMARK 280 -TRIS AT PH 6.5, 1.8 M AMMONIUM SULFATE, AND 2% (W/V) PEG MME REMARK 280 550, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.07050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.07050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.75850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 110.68700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.75850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 110.68700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.07050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.75850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 110.68700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.07050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.75850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 110.68700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 ILE A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 ASN A 132 REMARK 465 ALA A 133 REMARK 465 GLN A 134 REMARK 465 GLU A 157 REMARK 465 LYS A 158 REMARK 465 GLU A 159 REMARK 465 ASP A 171 REMARK 465 ARG A 172 REMARK 465 GLN A 173 REMARK 465 GLN A 174 REMARK 465 GLU A 175 REMARK 465 ASN A 176 REMARK 465 GLY A 177 REMARK 465 GLU A 178 REMARK 465 LYS A 179 REMARK 465 GLN A 180 REMARK 465 SER A 181 REMARK 465 MET A 182 REMARK 465 GLU A 603 REMARK 465 ASN A 604 REMARK 465 GLY A 743 REMARK 465 SER A 744 REMARK 465 ASN A 745 REMARK 465 GLY A 914 REMARK 465 GLY A 915 REMARK 465 LYS A 916 REMARK 465 THR A 935 REMARK 465 ASN A 936 REMARK 465 ASN A 937 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 167 ND2 ASN A 168 1.68 REMARK 500 OH TYR A 21 OE2 GLU A 37 2.05 REMARK 500 O SER A 385 N ASP A 387 2.10 REMARK 500 O GLN A 67 OH TYR A 71 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 920 CB VAL A 920 CG1 -0.175 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 28 -32.33 -135.13 REMARK 500 SER A 39 -49.12 165.26 REMARK 500 MET A 42 -12.67 68.81 REMARK 500 SER A 76 -72.89 -54.91 REMARK 500 SER A 77 66.05 -102.88 REMARK 500 LYS A 98 111.52 22.89 REMARK 500 ASN A 119 135.26 80.18 REMARK 500 SER A 129 150.64 156.61 REMARK 500 GLU A 136 -164.00 177.77 REMARK 500 ASN A 168 -22.26 92.79 REMARK 500 THR A 184 129.92 66.24 REMARK 500 CYS A 192 39.76 37.52 REMARK 500 GLN A 207 43.18 32.64 REMARK 500 THR A 245 -103.32 -74.17 REMARK 500 HIS A 247 41.54 -65.08 REMARK 500 ALA A 256 5.97 -64.98 REMARK 500 TYR A 264 119.10 -166.55 REMARK 500 ASP A 280 14.54 -66.38 REMARK 500 THR A 281 59.50 -112.06 REMARK 500 ASN A 286 154.10 179.69 REMARK 500 SER A 309 134.48 95.88 REMARK 500 PHE A 312 97.20 66.60 REMARK 500 SER A 318 -160.37 -106.47 REMARK 500 PHE A 319 157.35 162.31 REMARK 500 TRP A 329 30.82 -77.96 REMARK 500 ASP A 337 48.57 -84.43 REMARK 500 LYS A 375 80.08 -155.24 REMARK 500 ILE A 399 -167.63 -112.17 REMARK 500 GLN A 411 -174.74 -62.39 REMARK 500 ALA A 425 30.45 -75.49 REMARK 500 ASP A 462 -159.27 -93.12 REMARK 500 GLU A 472 135.38 -37.47 REMARK 500 THR A 493 48.79 -83.49 REMARK 500 PRO A 510 22.08 -79.27 REMARK 500 GLU A 511 15.44 -149.21 REMARK 500 TYR A 532 89.06 -167.89 REMARK 500 ASP A 533 34.19 73.47 REMARK 500 ASP A 540 -168.41 -108.13 REMARK 500 GLU A 543 63.60 30.07 REMARK 500 ILE A 553 -168.25 -103.26 REMARK 500 GLU A 600 17.77 -174.51 REMARK 500 THR A 601 -122.99 -148.14 REMARK 500 GLU A 612 -150.03 65.50 REMARK 500 TYR A 616 -75.68 -62.44 REMARK 500 ARG A 621 87.07 -162.68 REMARK 500 SER A 634 84.88 54.86 REMARK 500 TYR A 641 20.34 -140.01 REMARK 500 ALA A 653 37.06 74.72 REMARK 500 SER A 654 -177.69 -171.56 REMARK 500 THR A 656 -34.68 76.21 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 318 PHE A 319 -144.76 REMARK 500 PHE A 884 LEU A 885 -139.19 REMARK 500 PRO A 901 THR A 902 133.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD1 REMARK 620 2 ASP A 189 OD2 81.1 REMARK 620 3 ASP A 191 OD1 89.3 95.1 REMARK 620 4 ASP A 191 OD2 124.6 76.4 44.2 REMARK 620 5 ILE A 193 O 72.1 130.9 124.2 152.2 REMARK 620 6 GLU A 198 OE1 135.9 64.7 119.4 75.2 109.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD2 REMARK 620 2 GLU A 198 OE1 91.8 REMARK 620 3 GLU A 198 OE2 99.7 50.0 REMARK 620 4 ASN A 227 O 151.5 66.2 80.3 REMARK 620 5 HIS A 230 O 104.3 133.6 155.3 81.2 REMARK 620 6 ASP A 240 OD2 98.3 126.1 76.1 109.2 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 599 O REMARK 620 2 THR A 617 O 144.9 REMARK 620 3 LYS A 620 O 52.6 94.0 REMARK 620 4 ASP A 718 OD1 82.6 108.1 85.9 REMARK 620 5 ASP A 718 OD2 109.7 65.0 76.2 45.3 REMARK 620 N 1 2 3 4 DBREF1 7MJR A 1 937 UNP A0A2U5FTM5_BACTU DBREF2 7MJR A A0A2U5FTM5 1 937 SEQADV 7MJR TYR A 530 UNP A0A2U5FTM GLN 530 ENGINEERED MUTATION SEQADV 7MJR TYR A 531 UNP A0A2U5FTM GLU 531 ENGINEERED MUTATION SEQADV 7MJR TYR A 532 UNP A0A2U5FTM LYS 532 ENGINEERED MUTATION SEQRES 1 A 937 MET GLN ASN ILE VAL SER SER LYS SER GLU GLN ALA THR SEQRES 2 A 937 VAL ILE GLY LEU VAL GLY PHE TYR PHE LYS ASP SER THR SEQRES 3 A 937 PHE LYS GLU LEU MET PHE ILE GLN VAL GLY GLU LYS SER SEQRES 4 A 937 ASN LEU MET ASN LYS ALA ARG ILE ASN THR ASP ALA GLN SEQRES 5 A 937 GLN ILE GLN SER ILE ARG TRP MET GLY ASN LEU LYS SER SEQRES 6 A 937 PRO GLN THR GLY GLU TYR ARG LEU SER THR SER SER ASP SEQRES 7 A 937 GLU ASN VAL ILE LEU GLN ILE ASN GLY GLU THR VAL ILE SEQRES 8 A 937 ASN GLN ALA SER ILE GLN LYS ASN LEU LYS LEU GLU ALA SEQRES 9 A 937 ASN GLN VAL TYR GLU ILE LYS ILE GLU TYR ARG ASN THR SEQRES 10 A 937 SER ASN THR LEU PRO ASP LEU GLN LEU PHE TRP SER MET SEQRES 11 A 937 ASN ASN ALA GLN LYS GLU GLN ILE PRO GLU LYS TYR ILE SEQRES 12 A 937 LEU SER PRO ASN PHE SER GLU LYS ALA ASN SER LEU ALA SEQRES 13 A 937 GLU LYS GLU THR GLN SER PHE PHE PRO ASN TYR ASN LEU SEQRES 14 A 937 PHE ASP ARG GLN GLN GLU ASN GLY GLU LYS GLN SER MET SEQRES 15 A 937 SER THR PRO VAL ASP THR ASP ASN ASP CYS ILE PRO ASP SEQRES 16 A 937 GLU TRP GLU GLU LYS GLY TYR THR PHE ARG ASN GLN GLN SEQRES 17 A 937 ILE VAL PRO TRP ASN ASP ALA TYR SER ALA GLU GLY TYR SEQRES 18 A 937 LYS LYS TYR VAL SER ASN PRO TYR HIS ALA ARG THR VAL SEQRES 19 A 937 LYS ASP PRO TYR THR ASP PHE GLU LYS VAL THR GLY HIS SEQRES 20 A 937 MET PRO ALA ALA THR LYS TYR GLU ALA ARG ASP PRO LEU SEQRES 21 A 937 VAL ALA ALA TYR PRO SER VAL GLY VAL GLY MET GLU LYS SEQRES 22 A 937 LEU HIS PHE SER LYS ASN ASP THR VAL THR GLU GLY ASN SEQRES 23 A 937 ALA ASP THR LYS SER LYS THR THR THR LYS THR ASP THR SEQRES 24 A 937 THR THR ASN THR VAL GLU ILE GLY GLY SER LEU GLY PHE SEQRES 25 A 937 SER ASP LYS GLY PHE SER PHE SER ILE SER PRO LYS TYR SEQRES 26 A 937 THR HIS SER TRP SER SER SER THR SER VAL ALA ASP THR SEQRES 27 A 937 ASP SER THR THR TRP SER SER GLN ILE GLY ILE ASN THR SEQRES 28 A 937 ALA GLU ARG ALA TYR LEU ASN ALA ASN VAL ARG TYR TYR SEQRES 29 A 937 ASN GLY GLY THR ALA PRO ILE TYR ASP LEU LYS PRO THR SEQRES 30 A 937 THR ASN PHE VAL PHE GLN ASN SER GLY ASP SER ILE THR SEQRES 31 A 937 THR ILE THR ALA GLY PRO ASN GLN ILE GLY ASN SER LEU SEQRES 32 A 937 GLY ALA GLY ASP THR TYR PRO GLN LYS GLY GLN ALA PRO SEQRES 33 A 937 ILE SER LEU ASP LYS ALA ASN GLU ALA GLY THR VAL LYS SEQRES 34 A 937 ILE ALA ILE ASN ALA GLU GLN LEU ASP LYS ILE GLN ALA SEQRES 35 A 937 GLY THR GLU ILE LEU ASN ILE GLU THR THR GLN ASN ARG SEQRES 36 A 937 GLY GLN TYR GLY ILE LEU ASP GLU LYS GLY GLN VAL ILE SEQRES 37 A 937 PRO GLY GLY GLU TRP ASP PRO ILE ARG THR ASN ILE ASP SEQRES 38 A 937 ALA VAL SER GLY SER LEU THR LEU ASN LEU GLY THR GLY SEQRES 39 A 937 LYS ASP SER LEU GLU ARG ARG VAL ALA ALA LYS ASN MET SEQRES 40 A 937 ASN ASP PRO GLU ASP LYS THR PRO GLU ILE THR ILE LYS SEQRES 41 A 937 GLU ALA ILE LYS LYS ALA PHE ASN ALA TYR TYR TYR ASP SEQRES 42 A 937 GLY ARG LEU TYR TYR THR ASP GLN GLY GLU LYS ASP ILE SEQRES 43 A 937 PHE ILE ASP GLU PRO SER ILE ASN LEU ILE THR ASP GLU SEQRES 44 A 937 ASN THR LYS LYS GLU ILE GLU ARG GLN LEU ASN GLN MET SEQRES 45 A 937 PRO GLY LYS THR VAL TYR ASP VAL LYS TRP LYS ARG GLY SEQRES 46 A 937 MET LYS ILE THR LEU HIS VAL PRO ILE LYS TYR TYR ASP SEQRES 47 A 937 PHE GLU THR SER GLU ASN LEU TRP TYR TYR THR TYR GLN SEQRES 48 A 937 GLU SER GLY GLY TYR THR GLY LYS LYS ARG GLY ARG ILE SEQRES 49 A 937 GLY THR ASP GLY HIS GLY THR ALA MET SER ASN PRO GLN SEQRES 50 A 937 LEU LYS PRO TYR THR SER TYR THR VAL ARG ALA TYR VAL SEQRES 51 A 937 ARG THR ALA SER THR THR GLY SER ASN GLU VAL VAL PHE SEQRES 52 A 937 TYR ALA ASP ASN SER SER GLY ASN GLY GLN GLY ALA LYS SEQRES 53 A 937 VAL SER GLY LYS VAL THR GLY GLY LYS TRP LYS ILE ALA SEQRES 54 A 937 GLU PHE SER PHE ASN THR PHE ASN ASN PRO GLU TYR PHE SEQRES 55 A 937 LYS ILE ILE GLY LEU LYS ASN ASN GLY ASN ALA ASN LEU SEQRES 56 A 937 HIS PHE ASP ASP VAL SER VAL ILE GLU TRP LYS THR ASN SEQRES 57 A 937 GLU ASN LEU GLN LYS LYS HIS ILE PHE GLU LYS TRP SER SEQRES 58 A 937 PHE GLY SER ASN ASP GLU MET VAL ILE GLY ALA THR PHE SEQRES 59 A 937 THR ARG VAL PRO SER SER LYS ILE ARG TYR GLN TRP LYS SEQRES 60 A 937 ILE ASN GLY ARG LEU GLY SER ILE ILE PRO ALA PRO PRO SEQRES 61 A 937 LEU ASP ALA ASN GLY LYS ARG THR VAL THR TYR GLY SER SEQRES 62 A 937 ILE THR ALA ILE THR PRO MET GLU LEU TYR ALA VAL ASP SEQRES 63 A 937 GLU LYS ASN ASP ASN LEU LYS VAL LYS VAL ALA GLU LEU SEQRES 64 A 937 GLY GLU SER GLU ILE GLU LYS VAL MET ILE ASP ALA HIS SEQRES 65 A 937 LYS PHE SER GLY TRP TRP TYR LEU SER GLU ASN PRO ASN SEQRES 66 A 937 LEU TYR SER GLY LEU SER LEU TYR LYS LEU PRO ASP ILE SEQRES 67 A 937 PHE TYR ASN ASN VAL SER SER TYR LYS ILE ARG VAL ASN SEQRES 68 A 937 GLY LYS LYS VAL GLN THR VAL SER LYS PRO SER PRO PHE SEQRES 69 A 937 LEU PHE GLN ILE THR PHE ASN LEU LYS ASN PRO ASN GLY SEQRES 70 A 937 GLY THR TYR PRO THR LYS ASP ALA SER VAL GLU LEU TRP SEQRES 71 A 937 ALA THR VAL GLY GLY LYS ASP LEU LYS VAL LEU HIS LYS SEQRES 72 A 937 TRP ILE GLN LYS SER ASP VAL MET TYR SER GLN THR ASN SEQRES 73 A 937 ASN HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HET SO4 A1009 5 HET SO4 A1010 5 HET SO4 A1011 5 HET SO4 A1012 5 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 2 CA 3(CA 2+) FORMUL 5 SO4 9(O4 S 2-) HELIX 1 AA1 ASN A 43 ASN A 48 5 6 HELIX 2 AA2 ASP A 50 ILE A 54 5 5 HELIX 3 AA3 SER A 77 GLU A 79 5 3 HELIX 4 AA4 PRO A 139 LYS A 141 5 3 HELIX 5 AA5 PRO A 194 GLY A 201 1 8 HELIX 6 AA6 ASP A 214 GLU A 219 1 6 HELIX 7 AA7 THR A 239 THR A 245 1 7 HELIX 8 AA8 LYS A 253 ASP A 258 5 6 HELIX 9 AA9 THR A 300 VAL A 304 5 5 HELIX 10 AB1 THR A 342 GLY A 348 1 7 HELIX 11 AB2 LEU A 419 ASN A 423 1 5 HELIX 12 AB3 ALA A 434 ALA A 442 1 9 HELIX 13 AB4 TRP A 473 VAL A 483 1 11 HELIX 14 AB5 THR A 518 ASN A 528 1 11 HELIX 15 AB6 ASP A 558 LEU A 569 1 12 HELIX 16 AB7 THR A 576 VAL A 580 5 5 HELIX 17 AB8 ASN A 698 LYS A 703 5 6 HELIX 18 AB9 ASN A 730 HIS A 735 1 6 HELIX 19 AC1 GLY A 820 ALA A 831 1 12 HELIX 20 AC2 PRO A 856 ASN A 861 1 6 SHEET 1 AA1 5 GLU A 88 ASN A 92 0 SHEET 2 AA1 5 VAL A 81 ILE A 85 -1 N LEU A 83 O VAL A 90 SHEET 3 AA1 5 GLN A 106 ARG A 115 -1 O GLU A 113 N ILE A 82 SHEET 4 AA1 5 SER A 56 SER A 65 -1 N GLY A 61 O ILE A 110 SHEET 5 AA1 5 ILE A 143 LEU A 144 -1 O LEU A 144 N ASN A 62 SHEET 1 AA2 8 GLU A 88 ASN A 92 0 SHEET 2 AA2 8 VAL A 81 ILE A 85 -1 N LEU A 83 O VAL A 90 SHEET 3 AA2 8 GLN A 106 ARG A 115 -1 O GLU A 113 N ILE A 82 SHEET 4 AA2 8 SER A 56 SER A 65 -1 N GLY A 61 O ILE A 110 SHEET 5 AA2 8 LEU A 17 PHE A 22 -1 N PHE A 20 O ARG A 58 SHEET 6 AA2 8 LEU A 30 GLU A 37 -1 O MET A 31 N TYR A 21 SHEET 7 AA2 8 GLN A 208 PRO A 211 -1 O ILE A 209 N ILE A 33 SHEET 8 AA2 8 TYR A 202 PHE A 204 -1 N THR A 203 O VAL A 210 SHEET 1 AA3 3 ASN A 40 LEU A 41 0 SHEET 2 AA3 3 LEU A 124 PHE A 127 -1 O LEU A 124 N LEU A 41 SHEET 3 AA3 3 SER A 74 THR A 75 -1 N SER A 74 O PHE A 127 SHEET 1 AA4 2 GLY A 69 TYR A 71 0 SHEET 2 AA4 2 LEU A 100 LEU A 102 -1 O LEU A 100 N TYR A 71 SHEET 1 AA5 8 SER A 388 THR A 393 0 SHEET 2 AA5 8 THR A 377 PHE A 382 -1 N THR A 378 O ILE A 392 SHEET 3 AA5 8 LEU A 447 THR A 451 -1 O GLU A 450 N ASN A 379 SHEET 4 AA5 8 SER A 330 VAL A 335 -1 N SER A 331 O ILE A 449 SHEET 5 AA5 8 THR A 289 ASP A 298 -1 N THR A 297 O SER A 332 SHEET 6 AA5 8 VAL A 267 SER A 277 -1 N GLU A 272 O THR A 294 SHEET 7 AA5 8 ARG A 354 ASN A 365 -1 O ASN A 360 N LYS A 273 SHEET 8 AA5 8 ILE A 417 SER A 418 -1 O ILE A 417 N VAL A 361 SHEET 1 AA6 3 THR A 408 TYR A 409 0 SHEET 2 AA6 3 ARG A 354 ASN A 365 -1 N TYR A 363 O TYR A 409 SHEET 3 AA6 3 ALA A 431 ASN A 433 -1 O ILE A 432 N ALA A 355 SHEET 1 AA7 4 SER A 402 LEU A 403 0 SHEET 2 AA7 4 ILE A 371 TYR A 372 -1 N ILE A 371 O LEU A 403 SHEET 3 AA7 4 GLN A 457 LEU A 461 -1 O GLN A 457 N TYR A 372 SHEET 4 AA7 4 VAL A 467 GLU A 472 -1 O GLY A 470 N TYR A 458 SHEET 1 AA8 4 LEU A 498 ALA A 503 0 SHEET 2 AA8 4 SER A 484 ASN A 490 -1 N LEU A 487 O ARG A 500 SHEET 3 AA8 4 LYS A 587 HIS A 591 1 O LEU A 590 N THR A 488 SHEET 4 AA8 4 ASN A 554 THR A 557 -1 N ASN A 554 O HIS A 591 SHEET 1 AA9 2 TYR A 537 TYR A 538 0 SHEET 2 AA9 2 ILE A 546 PHE A 547 -1 O ILE A 546 N TYR A 538 SHEET 1 AB1 3 LYS A 595 TYR A 597 0 SHEET 2 AB1 3 LEU A 715 GLU A 724 -1 O VAL A 720 N TYR A 597 SHEET 3 AB1 3 ARG A 623 ILE A 624 -1 N ILE A 624 O LEU A 715 SHEET 1 AB2 4 LYS A 595 TYR A 597 0 SHEET 2 AB2 4 LEU A 715 GLU A 724 -1 O VAL A 720 N TYR A 597 SHEET 3 AB2 4 SER A 643 ARG A 651 -1 N THR A 645 O ILE A 723 SHEET 4 AB2 4 LYS A 687 ASN A 694 -1 O PHE A 691 N VAL A 646 SHEET 1 AB3 5 TRP A 606 TYR A 607 0 SHEET 2 AB3 5 HIS A 629 ALA A 632 -1 O THR A 631 N TYR A 607 SHEET 3 AB3 5 ILE A 704 GLY A 711 -1 O LEU A 707 N GLY A 630 SHEET 4 AB3 5 ASN A 659 ASP A 666 -1 N ASP A 666 O ILE A 704 SHEET 5 AB3 5 GLY A 674 GLY A 679 -1 O GLY A 679 N VAL A 661 SHEET 1 AB4 3 ILE A 736 PHE A 737 0 SHEET 2 AB4 3 ILE A 750 ARG A 756 -1 O ARG A 756 N ILE A 736 SHEET 3 AB4 3 ARG A 787 TYR A 791 -1 O ARG A 787 N PHE A 754 SHEET 1 AB5 3 ARG A 771 LEU A 772 0 SHEET 2 AB5 3 ARG A 763 ILE A 768 -1 N ILE A 768 O ARG A 771 SHEET 3 AB5 3 ILE A 776 PRO A 777 -1 O ILE A 776 N TYR A 764 SHEET 1 AB6 4 ARG A 771 LEU A 772 0 SHEET 2 AB6 4 ARG A 763 ILE A 768 -1 N ILE A 768 O ARG A 771 SHEET 3 AB6 4 MET A 800 VAL A 805 -1 O TYR A 803 N GLN A 765 SHEET 4 AB6 4 LYS A 815 LEU A 819 -1 O LEU A 819 N MET A 800 SHEET 1 AB7 3 PHE A 834 LEU A 840 0 SHEET 2 AB7 3 ASN A 843 LEU A 852 -1 O SER A 848 N TRP A 838 SHEET 3 AB7 3 ILE A 888 ASN A 891 -1 O PHE A 890 N LEU A 850 SHEET 1 AB8 4 GLN A 876 SER A 879 0 SHEET 2 AB8 4 SER A 865 VAL A 870 -1 N TYR A 866 O VAL A 878 SHEET 3 AB8 4 SER A 906 LEU A 909 -1 O GLU A 908 N ARG A 869 SHEET 4 AB8 4 LEU A 921 TRP A 924 -1 O LYS A 923 N VAL A 907 LINK OD1 ASP A 187 CA CA A1001 1555 1555 2.37 LINK OD2 ASP A 189 CA CA A1001 1555 1555 2.18 LINK OD1 ASP A 191 CA CA A1001 1555 1555 2.06 LINK OD2 ASP A 191 CA CA A1001 1555 1555 3.16 LINK OD2 ASP A 191 CA CA A1002 1555 1555 2.36 LINK O ILE A 193 CA CA A1001 1555 1555 2.22 LINK OE1 GLU A 198 CA CA A1001 1555 1555 2.69 LINK OE1 GLU A 198 CA CA A1002 1555 1555 2.63 LINK OE2 GLU A 198 CA CA A1002 1555 1555 2.53 LINK O ASN A 227 CA CA A1002 1555 1555 2.40 LINK O HIS A 230 CA CA A1002 1555 1555 2.38 LINK OD2 ASP A 240 CA CA A1002 1555 1555 2.37 LINK O PHE A 599 CA CA A1003 1555 1555 3.16 LINK O THR A 617 CA CA A1003 1555 1555 2.53 LINK O LYS A 620 CA CA A1003 1555 1555 3.16 LINK OD1 ASP A 718 CA CA A1003 1555 1555 3.05 LINK OD2 ASP A 718 CA CA A1003 1555 1555 2.50 CISPEP 1 TYR A 409 PRO A 410 0 -6.13 CRYST1 117.517 221.374 154.141 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008509 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006488 0.00000