HEADER PLANT PROTEIN, IMMUNE SYSTEM 21-APR-21 7MK3 TITLE CRYSTAL STRUCTURE OF NPR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN NPR1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 39-410; COMPND 5 SYNONYM: BTB/POZ DOMAIN-CONTAINING PROTEIN NPR1,NON-INDUCIBLE COMPND 6 IMMUNITY PROTEIN 1,NIM1,NONEXPRESSER OF PR GENES 1,SALICYLIC ACID COMPND 7 INSENSITIVE 1,SAI1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: NPR1, NIM1, SAI1, AT1G64280, F15H21.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NPR1, SAR, PLANT IMMUNITY, PLANT PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.CHENG,Q.WU,P.ZHOU REVDAT 6 18-OCT-23 7MK3 1 REMARK REVDAT 5 22-JUN-22 7MK3 1 JRNL REVDAT 4 01-JUN-22 7MK3 1 JRNL REVDAT 3 25-MAY-22 7MK3 1 JRNL REVDAT 2 11-MAY-22 7MK3 1 JRNL REVDAT 1 16-MAR-22 7MK3 0 JRNL AUTH S.KUMAR,R.ZAVALIEV,Q.WU,Y.ZHOU,J.CHENG,L.DILLARD,J.POWERS, JRNL AUTH 2 J.WITHERS,J.ZHAO,Z.GUAN,M.J.BORGNIA,A.BARTESAGHI,X.DONG, JRNL AUTH 3 P.ZHOU JRNL TITL STRUCTURAL BASIS OF NPR1 IN ACTIVATING PLANT IMMUNITY. JRNL REF NATURE V. 605 561 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35545668 JRNL DOI 10.1038/S41586-022-04699-W REMARK 2 REMARK 2 RESOLUTION. 3.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4200 - 6.3600 1.00 2875 150 0.2007 0.2186 REMARK 3 2 6.3600 - 5.0500 1.00 2663 139 0.2742 0.2939 REMARK 3 3 5.0500 - 4.4100 1.00 2609 138 0.2269 0.2444 REMARK 3 4 4.4100 - 4.0100 1.00 2606 137 0.2286 0.2951 REMARK 3 5 4.0100 - 3.7200 1.00 2593 137 0.2776 0.3151 REMARK 3 6 3.7200 - 3.5000 1.00 2570 135 0.2862 0.3274 REMARK 3 7 3.5000 - 3.3300 1.00 2557 135 0.2925 0.2938 REMARK 3 8 3.3300 - 3.1800 1.00 2548 135 0.3474 0.3578 REMARK 3 9 3.1800 - 3.0600 1.00 2564 135 0.4113 0.4521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.543 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 113.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5607 REMARK 3 ANGLE : 0.438 7592 REMARK 3 CHIRALITY : 0.036 919 REMARK 3 PLANARITY : 0.004 971 REMARK 3 DIHEDRAL : 3.657 790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5884 78.8330 118.7279 REMARK 3 T TENSOR REMARK 3 T11: 0.8546 T22: 0.6547 REMARK 3 T33: 0.8057 T12: -0.0902 REMARK 3 T13: -0.0652 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.4675 L22: 0.7259 REMARK 3 L33: 5.3132 L12: -0.2088 REMARK 3 L13: -1.5416 L23: 1.2927 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0598 S13: -0.0462 REMARK 3 S21: -0.1462 S22: 0.0910 S23: -0.1927 REMARK 3 S31: -0.3361 S32: 0.1714 S33: -0.1814 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4770 79.2781 148.9768 REMARK 3 T TENSOR REMARK 3 T11: 1.0005 T22: 0.6392 REMARK 3 T33: 0.9731 T12: -0.0118 REMARK 3 T13: -0.0943 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 3.7086 L22: 5.7349 REMARK 3 L33: 4.8096 L12: -2.1381 REMARK 3 L13: -0.8362 L23: 2.4274 REMARK 3 S TENSOR REMARK 3 S11: -0.2646 S12: 0.0272 S13: 0.0242 REMARK 3 S21: 1.0946 S22: 0.1832 S23: 0.0747 REMARK 3 S31: 0.2218 S32: -0.1504 S33: 0.0591 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3892 66.2629 78.8082 REMARK 3 T TENSOR REMARK 3 T11: 0.5776 T22: 0.8098 REMARK 3 T33: 0.7696 T12: -0.0757 REMARK 3 T13: -0.0300 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 0.7260 L22: 2.1496 REMARK 3 L33: 5.9658 L12: 0.1345 REMARK 3 L13: -1.1280 L23: 1.2480 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: -0.0421 S13: -0.0395 REMARK 3 S21: -0.1149 S22: 0.1855 S23: -0.0485 REMARK 3 S31: -0.1941 S32: 0.4519 S33: -0.2813 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5957 65.6366 48.6751 REMARK 3 T TENSOR REMARK 3 T11: 0.5928 T22: 0.9852 REMARK 3 T33: 0.9440 T12: -0.0424 REMARK 3 T13: -0.0829 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 4.2890 L22: 4.1627 REMARK 3 L33: 4.0591 L12: -1.6163 REMARK 3 L13: -2.0619 L23: 0.9512 REMARK 3 S TENSOR REMARK 3 S11: 0.2754 S12: 0.4580 S13: -0.2480 REMARK 3 S21: -0.0288 S22: -0.3145 S23: 0.1651 REMARK 3 S31: 0.1042 S32: -0.1446 S33: 0.0204 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MK3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000252772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILT=20200417 REMARK 200 DATA SCALING SOFTWARE : XSCALE BUILT=20200417 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24848 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.060 REMARK 200 RESOLUTION RANGE LOW (A) : 49.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 42.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER DEV_3922 REMARK 200 STARTING MODEL: PDB ENTRY 7MK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60 MM HEPES, PH 7.5, 9.5% PEG3350, REMARK 280 0.125 M TRI-SODIUM CITRATE, 75 MM SODIUM CHLORIDE, 0.5 MM TCEP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 197.68500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.49000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.84250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.49000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 296.52750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.49000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.49000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 98.84250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.49000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.49000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 296.52750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 197.68500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 PRO A 34 REMARK 465 ALA A 35 REMARK 465 VAL A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 SER A 104 REMARK 465 ASN A 105 REMARK 465 ASN A 106 REMARK 465 THR A 107 REMARK 465 ALA A 108 REMARK 465 GLU A 405 REMARK 465 GLN A 406 REMARK 465 ILE A 407 REMARK 465 PRO A 408 REMARK 465 ARG A 409 REMARK 465 ASP A 410 REMARK 465 GLY A 411 REMARK 465 GLY A 412 REMARK 465 TRP A 413 REMARK 465 SER A 414 REMARK 465 HIS A 415 REMARK 465 PRO A 416 REMARK 465 GLN A 417 REMARK 465 PHE A 418 REMARK 465 GLU A 419 REMARK 465 LYS A 420 REMARK 465 GLY B 33 REMARK 465 PRO B 34 REMARK 465 ALA B 35 REMARK 465 VAL B 36 REMARK 465 PRO B 37 REMARK 465 ARG B 38 REMARK 465 ASP B 103 REMARK 465 SER B 104 REMARK 465 GLN B 406 REMARK 465 ILE B 407 REMARK 465 PRO B 408 REMARK 465 ARG B 409 REMARK 465 ASP B 410 REMARK 465 GLY B 411 REMARK 465 GLY B 412 REMARK 465 TRP B 413 REMARK 465 SER B 414 REMARK 465 HIS B 415 REMARK 465 PRO B 416 REMARK 465 GLN B 417 REMARK 465 PHE B 418 REMARK 465 GLU B 419 REMARK 465 LYS B 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 39 OG1 CG2 REMARK 470 SER A 44 OG REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 SER A 85 OG REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 SER A 138 OG REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS A 224 CE NZ REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LEU A 256 CG CD1 CD2 REMARK 470 LEU A 258 CG CD1 CD2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 VAL A 260 CG1 CG2 REMARK 470 VAL A 263 CG1 CG2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 SER A 268 OG REMARK 470 SER A 276 OG REMARK 470 LEU A 284 CG CD1 CD2 REMARK 470 ASP A 289 CG OD1 OD2 REMARK 470 THR A 291 OG1 CG2 REMARK 470 LYS A 351 CD CE NZ REMARK 470 ASN A 379 CG OD1 ND2 REMARK 470 CYS A 385 SG REMARK 470 ARG A 404 CG CD NE CZ NH1 NH2 REMARK 470 THR B 39 OG1 CG2 REMARK 470 SER B 85 OG REMARK 470 SER B 93 OG REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 ASN B 105 CG OD1 ND2 REMARK 470 ASN B 106 CG OD1 ND2 REMARK 470 THR B 107 OG1 CG2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 LEU B 256 CG CD1 CD2 REMARK 470 LEU B 258 CG CD1 CD2 REMARK 470 VAL B 260 CG1 CG2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 VAL B 263 CG1 CG2 REMARK 470 LYS B 264 CG CD CE NZ REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 GLU B 288 CG CD OE1 OE2 REMARK 470 ASP B 289 CG OD1 OD2 REMARK 470 GLU B 350 CG CD OE1 OE2 REMARK 470 LYS B 351 CD CE NZ REMARK 470 ASN B 380 CG OD1 ND2 REMARK 470 GLU B 383 CG CD OE1 OE2 REMARK 470 SER B 388 OG REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 470 LYS B 403 CG CD CE NZ REMARK 470 ARG B 404 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 405 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 64 61.25 60.95 REMARK 500 ASN A 231 62.59 -105.62 REMARK 500 VAL A 260 75.81 -119.71 REMARK 500 ASN A 379 115.37 -163.05 REMARK 500 GLU A 383 -72.19 -74.13 REMARK 500 CYS A 385 -42.97 67.24 REMARK 500 LYS A 386 -42.88 72.57 REMARK 500 HIS A 387 -126.28 56.98 REMARK 500 LEU A 389 33.94 -77.35 REMARK 500 TYR B 64 71.09 60.27 REMARK 500 ASN B 106 -77.88 -115.96 REMARK 500 ALA B 109 63.26 -110.03 REMARK 500 ALA B 118 -76.68 -79.29 REMARK 500 LYS B 119 14.66 54.86 REMARK 500 TYR B 121 116.43 -164.47 REMARK 500 ASN B 231 57.44 -107.10 REMARK 500 CYS B 385 82.67 56.75 REMARK 500 ARG B 404 61.45 -116.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 150 SG REMARK 620 2 CYS A 155 SG 107.4 REMARK 620 3 HIS A 157 ND1 105.8 107.9 REMARK 620 4 CYS A 160 SG 111.5 108.8 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 150 SG REMARK 620 2 CYS B 155 SG 108.7 REMARK 620 3 HIS B 157 ND1 106.5 106.0 REMARK 620 4 CYS B 160 SG 111.5 109.0 115.0 REMARK 620 N 1 2 3 DBREF 7MK3 A 39 410 UNP P93002 NPR1_ARATH 39 410 DBREF 7MK3 B 39 410 UNP P93002 NPR1_ARATH 39 410 SEQADV 7MK3 GLY A 33 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PRO A 34 UNP P93002 EXPRESSION TAG SEQADV 7MK3 ALA A 35 UNP P93002 EXPRESSION TAG SEQADV 7MK3 VAL A 36 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PRO A 37 UNP P93002 EXPRESSION TAG SEQADV 7MK3 ARG A 38 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLY A 411 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLY A 412 UNP P93002 EXPRESSION TAG SEQADV 7MK3 TRP A 413 UNP P93002 EXPRESSION TAG SEQADV 7MK3 SER A 414 UNP P93002 EXPRESSION TAG SEQADV 7MK3 HIS A 415 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PRO A 416 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLN A 417 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PHE A 418 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLU A 419 UNP P93002 EXPRESSION TAG SEQADV 7MK3 LYS A 420 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLY B 33 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PRO B 34 UNP P93002 EXPRESSION TAG SEQADV 7MK3 ALA B 35 UNP P93002 EXPRESSION TAG SEQADV 7MK3 VAL B 36 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PRO B 37 UNP P93002 EXPRESSION TAG SEQADV 7MK3 ARG B 38 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLY B 411 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLY B 412 UNP P93002 EXPRESSION TAG SEQADV 7MK3 TRP B 413 UNP P93002 EXPRESSION TAG SEQADV 7MK3 SER B 414 UNP P93002 EXPRESSION TAG SEQADV 7MK3 HIS B 415 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PRO B 416 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLN B 417 UNP P93002 EXPRESSION TAG SEQADV 7MK3 PHE B 418 UNP P93002 EXPRESSION TAG SEQADV 7MK3 GLU B 419 UNP P93002 EXPRESSION TAG SEQADV 7MK3 LYS B 420 UNP P93002 EXPRESSION TAG SEQRES 1 A 388 GLY PRO ALA VAL PRO ARG THR GLY PRO ASP VAL SER ALA SEQRES 2 A 388 LEU GLN LEU LEU SER ASN SER PHE GLU SER VAL PHE ASP SEQRES 3 A 388 SER PRO ASP ASP PHE TYR SER ASP ALA LYS LEU VAL LEU SEQRES 4 A 388 SER ASP GLY ARG GLU VAL SER PHE HIS ARG CYS VAL LEU SEQRES 5 A 388 SER ALA ARG SER SER PHE PHE LYS SER ALA LEU ALA ALA SEQRES 6 A 388 ALA LYS LYS GLU LYS ASP SER ASN ASN THR ALA ALA VAL SEQRES 7 A 388 LYS LEU GLU LEU LYS GLU ILE ALA LYS ASP TYR GLU VAL SEQRES 8 A 388 GLY PHE ASP SER VAL VAL THR VAL LEU ALA TYR VAL TYR SEQRES 9 A 388 SER SER ARG VAL ARG PRO PRO PRO LYS GLY VAL SER GLU SEQRES 10 A 388 CYS ALA ASP GLU ASN CYS CYS HIS VAL ALA CYS ARG PRO SEQRES 11 A 388 ALA VAL ASP PHE MET LEU GLU VAL LEU TYR LEU ALA PHE SEQRES 12 A 388 ILE PHE LYS ILE PRO GLU LEU ILE THR LEU TYR GLN ARG SEQRES 13 A 388 HIS LEU LEU ASP VAL VAL ASP LYS VAL VAL ILE GLU ASP SEQRES 14 A 388 THR LEU VAL ILE LEU LYS LEU ALA ASN ILE CYS GLY LYS SEQRES 15 A 388 ALA CYS MET LYS LEU LEU ASP ARG CYS LYS GLU ILE ILE SEQRES 16 A 388 VAL LYS SER ASN VAL ASP MET VAL SER LEU GLU LYS SER SEQRES 17 A 388 LEU PRO GLU GLU LEU VAL LYS GLU ILE ILE ASP ARG ARG SEQRES 18 A 388 LYS GLU LEU GLY LEU GLU VAL PRO LYS VAL LYS LYS HIS SEQRES 19 A 388 VAL SER ASN VAL HIS LYS ALA LEU ASP SER ASP ASP ILE SEQRES 20 A 388 GLU LEU VAL LYS LEU LEU LEU LYS GLU ASP HIS THR ASN SEQRES 21 A 388 LEU ASP ASP ALA CYS ALA LEU HIS PHE ALA VAL ALA TYR SEQRES 22 A 388 CYS ASN VAL LYS THR ALA THR ASP LEU LEU LYS LEU ASP SEQRES 23 A 388 LEU ALA ASP VAL ASN HIS ARG ASN PRO ARG GLY TYR THR SEQRES 24 A 388 VAL LEU HIS VAL ALA ALA MET ARG LYS GLU PRO GLN LEU SEQRES 25 A 388 ILE LEU SER LEU LEU GLU LYS GLY ALA SER ALA SER GLU SEQRES 26 A 388 ALA THR LEU GLU GLY ARG THR ALA LEU MET ILE ALA LYS SEQRES 27 A 388 GLN ALA THR MET ALA VAL GLU CYS ASN ASN ILE PRO GLU SEQRES 28 A 388 GLN CYS LYS HIS SER LEU LYS GLY ARG LEU CYS VAL GLU SEQRES 29 A 388 ILE LEU GLU GLN GLU ASP LYS ARG GLU GLN ILE PRO ARG SEQRES 30 A 388 ASP GLY GLY TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 388 GLY PRO ALA VAL PRO ARG THR GLY PRO ASP VAL SER ALA SEQRES 2 B 388 LEU GLN LEU LEU SER ASN SER PHE GLU SER VAL PHE ASP SEQRES 3 B 388 SER PRO ASP ASP PHE TYR SER ASP ALA LYS LEU VAL LEU SEQRES 4 B 388 SER ASP GLY ARG GLU VAL SER PHE HIS ARG CYS VAL LEU SEQRES 5 B 388 SER ALA ARG SER SER PHE PHE LYS SER ALA LEU ALA ALA SEQRES 6 B 388 ALA LYS LYS GLU LYS ASP SER ASN ASN THR ALA ALA VAL SEQRES 7 B 388 LYS LEU GLU LEU LYS GLU ILE ALA LYS ASP TYR GLU VAL SEQRES 8 B 388 GLY PHE ASP SER VAL VAL THR VAL LEU ALA TYR VAL TYR SEQRES 9 B 388 SER SER ARG VAL ARG PRO PRO PRO LYS GLY VAL SER GLU SEQRES 10 B 388 CYS ALA ASP GLU ASN CYS CYS HIS VAL ALA CYS ARG PRO SEQRES 11 B 388 ALA VAL ASP PHE MET LEU GLU VAL LEU TYR LEU ALA PHE SEQRES 12 B 388 ILE PHE LYS ILE PRO GLU LEU ILE THR LEU TYR GLN ARG SEQRES 13 B 388 HIS LEU LEU ASP VAL VAL ASP LYS VAL VAL ILE GLU ASP SEQRES 14 B 388 THR LEU VAL ILE LEU LYS LEU ALA ASN ILE CYS GLY LYS SEQRES 15 B 388 ALA CYS MET LYS LEU LEU ASP ARG CYS LYS GLU ILE ILE SEQRES 16 B 388 VAL LYS SER ASN VAL ASP MET VAL SER LEU GLU LYS SER SEQRES 17 B 388 LEU PRO GLU GLU LEU VAL LYS GLU ILE ILE ASP ARG ARG SEQRES 18 B 388 LYS GLU LEU GLY LEU GLU VAL PRO LYS VAL LYS LYS HIS SEQRES 19 B 388 VAL SER ASN VAL HIS LYS ALA LEU ASP SER ASP ASP ILE SEQRES 20 B 388 GLU LEU VAL LYS LEU LEU LEU LYS GLU ASP HIS THR ASN SEQRES 21 B 388 LEU ASP ASP ALA CYS ALA LEU HIS PHE ALA VAL ALA TYR SEQRES 22 B 388 CYS ASN VAL LYS THR ALA THR ASP LEU LEU LYS LEU ASP SEQRES 23 B 388 LEU ALA ASP VAL ASN HIS ARG ASN PRO ARG GLY TYR THR SEQRES 24 B 388 VAL LEU HIS VAL ALA ALA MET ARG LYS GLU PRO GLN LEU SEQRES 25 B 388 ILE LEU SER LEU LEU GLU LYS GLY ALA SER ALA SER GLU SEQRES 26 B 388 ALA THR LEU GLU GLY ARG THR ALA LEU MET ILE ALA LYS SEQRES 27 B 388 GLN ALA THR MET ALA VAL GLU CYS ASN ASN ILE PRO GLU SEQRES 28 B 388 GLN CYS LYS HIS SER LEU LYS GLY ARG LEU CYS VAL GLU SEQRES 29 B 388 ILE LEU GLU GLN GLU ASP LYS ARG GLU GLN ILE PRO ARG SEQRES 30 B 388 ASP GLY GLY TRP SER HIS PRO GLN PHE GLU LYS HET ZN A 601 1 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET CL A 605 1 HET CL A 606 1 HET CL A 607 1 HET CL A 608 1 HET ZN B 601 1 HET GOL B 602 6 HET GOL B 603 6 HET GOL B 604 6 HET GOL B 605 6 HET GOL B 606 6 HET GOL B 607 6 HET GOL B 608 6 HET CL B 609 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GOL 10(C3 H8 O3) FORMUL 7 CL 5(CL 1-) HELIX 1 AA1 ASP A 42 SER A 59 1 18 HELIX 2 AA2 PRO A 60 TYR A 64 5 5 HELIX 3 AA3 HIS A 80 SER A 88 1 9 HELIX 4 AA4 SER A 88 LYS A 99 1 12 HELIX 5 AA5 LYS A 100 LYS A 102 5 3 HELIX 6 AA6 LEU A 114 ALA A 118 1 5 HELIX 7 AA7 GLY A 124 SER A 138 1 15 HELIX 8 AA8 CYS A 160 PHE A 177 1 18 HELIX 9 AA9 ILE A 179 VAL A 194 1 16 HELIX 10 AB1 VAL A 198 CYS A 212 1 15 HELIX 11 AB2 GLY A 213 ALA A 215 5 3 HELIX 12 AB3 CYS A 216 SER A 230 1 15 HELIX 13 AB4 ASP A 233 LEU A 241 1 9 HELIX 14 AB5 PRO A 242 LEU A 256 1 15 HELIX 15 AB6 LYS A 264 SER A 276 1 13 HELIX 16 AB7 ASP A 278 GLU A 288 1 11 HELIX 17 AB8 ASN A 292 CYS A 297 1 6 HELIX 18 AB9 CYS A 297 TYR A 305 1 9 HELIX 19 AC1 ASN A 307 LYS A 316 1 10 HELIX 20 AC2 THR A 331 LYS A 340 1 10 HELIX 21 AC3 GLU A 341 GLU A 350 1 10 HELIX 22 AC4 THR A 364 THR A 373 1 10 HELIX 23 AC5 MET A 374 ASN A 379 5 6 HELIX 24 AC6 LEU A 389 ARG A 404 1 16 HELIX 25 AC7 ASP B 42 SER B 59 1 18 HELIX 26 AC8 PRO B 60 TYR B 64 5 5 HELIX 27 AC9 HIS B 80 SER B 88 1 9 HELIX 28 AD1 SER B 88 LYS B 102 1 15 HELIX 29 AD2 LEU B 114 ALA B 118 1 5 HELIX 30 AD3 GLY B 124 SER B 138 1 15 HELIX 31 AD4 CYS B 160 PHE B 177 1 18 HELIX 32 AD5 ILE B 179 VAL B 194 1 16 HELIX 33 AD6 ASP B 195 VAL B 197 5 3 HELIX 34 AD7 VAL B 198 CYS B 212 1 15 HELIX 35 AD8 GLY B 213 ALA B 215 5 3 HELIX 36 AD9 CYS B 216 SER B 230 1 15 HELIX 37 AE1 ASP B 233 LEU B 241 1 9 HELIX 38 AE2 PRO B 242 LEU B 256 1 15 HELIX 39 AE3 LYS B 264 SER B 276 1 13 HELIX 40 AE4 ASP B 278 LYS B 287 1 10 HELIX 41 AE5 ASN B 292 CYS B 297 1 6 HELIX 42 AE6 CYS B 297 CYS B 306 1 10 HELIX 43 AE7 ASN B 307 LEU B 317 1 11 HELIX 44 AE8 THR B 331 LYS B 340 1 10 HELIX 45 AE9 GLU B 341 LYS B 351 1 11 HELIX 46 AF1 THR B 364 THR B 373 1 10 HELIX 47 AF2 MET B 374 ASN B 379 5 6 HELIX 48 AF3 LEU B 389 LYS B 403 1 15 SHEET 1 AA1 3 GLU A 76 PHE A 79 0 SHEET 2 AA1 3 ALA A 67 VAL A 70 -1 N ALA A 67 O PHE A 79 SHEET 3 AA1 3 LYS A 111 GLU A 113 1 O LEU A 112 N VAL A 70 SHEET 1 AA2 3 GLU B 76 PHE B 79 0 SHEET 2 AA2 3 ALA B 67 VAL B 70 -1 N LEU B 69 O VAL B 77 SHEET 3 AA2 3 LYS B 111 GLU B 113 1 O LEU B 112 N LYS B 68 LINK SG CYS A 150 ZN ZN A 601 1555 1555 2.32 LINK SG CYS A 155 ZN ZN A 601 1555 1555 2.32 LINK ND1 HIS A 157 ZN ZN A 601 1555 1555 2.10 LINK SG CYS A 160 ZN ZN A 601 1555 1555 2.32 LINK SG CYS B 150 ZN ZN B 601 1555 1555 2.32 LINK SG CYS B 155 ZN ZN B 601 1555 1555 2.32 LINK ND1 HIS B 157 ZN ZN B 601 1555 1555 2.10 LINK SG CYS B 160 ZN ZN B 601 1555 1555 2.33 CRYST1 78.980 78.980 395.370 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002529 0.00000