HEADER CYTOKINE 21-APR-21 7MK7 TITLE AUGMENTOR DOMAIN OF AUGMENTOR-BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALK AND LTK LIGAND 1,MALTODEXTRIN-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AUGMENTOR BETA,AUG-BETA,PROTEIN FAM150A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: AUGMENTOR BETA RESIDUES 60-129 FOLLOWED BY C-TERMINAL COMPND 8 MBP TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: ALKAL1, MALE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL SIGNALING, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.KRIMMER,A.V.RESHETNYAK,D.E.PULEO,J.SCHLESSINGER REVDAT 4 18-OCT-23 7MK7 1 REMARK REVDAT 3 15-DEC-21 7MK7 1 JRNL REVDAT 2 08-DEC-21 7MK7 1 JRNL REVDAT 1 24-NOV-21 7MK7 0 JRNL AUTH T.LI,S.E.STAYROOK,Y.TSUTSUI,J.ZHANG,Y.WANG,H.LI,A.PROFFITT, JRNL AUTH 2 S.G.KRIMMER,M.AHMED,O.BELLIVEAU,I.X.WALKER,K.C.MUDUMBI, JRNL AUTH 3 Y.SUZUKI,I.LAX,D.ALVARADO,M.A.LEMMON,J.SCHLESSINGER, JRNL AUTH 4 D.E.KLEIN JRNL TITL STRUCTURAL BASIS FOR LIGAND RECEPTION BY ANAPLASTIC LYMPHOMA JRNL TITL 2 KINASE. JRNL REF NATURE V. 600 148 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34819665 JRNL DOI 10.1038/S41586-021-04141-7 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.914 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 33729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.005 REMARK 3 FREE R VALUE TEST SET COUNT : 1688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8690 - 5.5562 0.96 2715 144 0.1860 0.2459 REMARK 3 2 5.5562 - 4.4112 0.94 2636 138 0.1789 0.2512 REMARK 3 3 4.4112 - 3.8539 0.97 2731 144 0.1805 0.2387 REMARK 3 4 3.8539 - 3.5017 0.94 2626 137 0.1948 0.2279 REMARK 3 5 3.5017 - 3.2508 0.95 2693 142 0.2232 0.2814 REMARK 3 6 3.2508 - 3.0591 0.96 2724 144 0.2594 0.3274 REMARK 3 7 3.0591 - 2.9060 0.97 2751 145 0.2724 0.3355 REMARK 3 8 2.9060 - 2.7795 0.96 2665 140 0.2726 0.3210 REMARK 3 9 2.7795 - 2.6725 0.96 2712 143 0.2766 0.3113 REMARK 3 10 2.6725 - 2.5803 0.96 2671 141 0.2919 0.3549 REMARK 3 11 2.5803 - 2.4996 0.96 2723 143 0.3185 0.3356 REMARK 3 12 2.4996 - 2.4282 0.85 2394 127 0.4215 0.5096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.443 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.505 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5587 REMARK 3 ANGLE : 0.747 7689 REMARK 3 CHIRALITY : 0.047 897 REMARK 3 PLANARITY : 0.005 982 REMARK 3 DIHEDRAL : 11.733 3248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6501 74.9470 106.5516 REMARK 3 T TENSOR REMARK 3 T11: 0.5373 T22: 0.4183 REMARK 3 T33: 0.7524 T12: 0.0383 REMARK 3 T13: 0.0225 T23: 0.1632 REMARK 3 L TENSOR REMARK 3 L11: 1.1107 L22: 7.2248 REMARK 3 L33: 3.9734 L12: -2.2025 REMARK 3 L13: -1.9237 L23: 5.1688 REMARK 3 S TENSOR REMARK 3 S11: 0.1319 S12: -0.0675 S13: 0.2427 REMARK 3 S21: -0.5423 S22: 0.3214 S23: -0.6134 REMARK 3 S31: 0.0838 S32: 0.1532 S33: -0.4372 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6199 101.5534 126.6618 REMARK 3 T TENSOR REMARK 3 T11: 0.4199 T22: 0.3613 REMARK 3 T33: 0.6292 T12: 0.1202 REMARK 3 T13: -0.0545 T23: 0.1674 REMARK 3 L TENSOR REMARK 3 L11: 2.5553 L22: 3.3728 REMARK 3 L33: 1.7656 L12: -1.4970 REMARK 3 L13: -0.5450 L23: 0.2759 REMARK 3 S TENSOR REMARK 3 S11: -0.3233 S12: -0.1411 S13: 0.1815 REMARK 3 S21: 0.4628 S22: 0.3235 S23: -0.2589 REMARK 3 S31: -0.0687 S32: -0.0307 S33: 0.0138 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.6403 53.9297 88.4233 REMARK 3 T TENSOR REMARK 3 T11: 0.4394 T22: 0.4575 REMARK 3 T33: 0.7684 T12: -0.0440 REMARK 3 T13: 0.0820 T23: 0.1386 REMARK 3 L TENSOR REMARK 3 L11: 0.1552 L22: 8.2317 REMARK 3 L33: 5.6615 L12: 0.0979 REMARK 3 L13: 0.2806 L23: 6.5352 REMARK 3 S TENSOR REMARK 3 S11: -0.1090 S12: 0.0107 S13: -0.0203 REMARK 3 S21: -0.2553 S22: 0.7443 S23: -0.7783 REMARK 3 S31: -0.1893 S32: 0.4767 S33: -0.6552 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 141 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8405 20.2384 68.2759 REMARK 3 T TENSOR REMARK 3 T11: 0.6994 T22: 0.3972 REMARK 3 T33: 0.6362 T12: -0.1713 REMARK 3 T13: 0.0999 T23: 0.1239 REMARK 3 L TENSOR REMARK 3 L11: 2.3693 L22: 2.7782 REMARK 3 L33: 1.8875 L12: 1.2994 REMARK 3 L13: -0.4258 L23: -0.4214 REMARK 3 S TENSOR REMARK 3 S11: -0.4016 S12: 0.1586 S13: -0.1682 REMARK 3 S21: -0.7843 S22: 0.3760 S23: -0.2241 REMARK 3 S31: -0.0118 S32: 0.0400 S33: 0.0016 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.428 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 10.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.01700 REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ANF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 4.9, 16% PEG REMARK 280 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 60 REMARK 465 ARG A 61 REMARK 465 SER A 62 REMARK 465 ALA A 63 REMARK 465 GLU A 64 REMARK 465 ILE A 65 REMARK 465 PHE A 66 REMARK 465 PRO A 67 REMARK 465 ARG A 68 REMARK 465 ASP A 69 REMARK 465 SER A 70 REMARK 465 ASN A 71 REMARK 465 LEU A 72 REMARK 465 LYS A 73 REMARK 465 ASP A 74 REMARK 465 LYS A 75 REMARK 465 PHE A 76 REMARK 465 ILE A 77 REMARK 465 LYS A 78 REMARK 465 HIS A 79 REMARK 465 PHE A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 ASP A 288 REMARK 465 GLY A 289 REMARK 465 GLY A 290 REMARK 465 TYR A 291 REMARK 465 ALA A 292 REMARK 465 PHE A 293 REMARK 465 LYS A 294 REMARK 465 TYR A 295 REMARK 465 ALA A 296 REMARK 465 ALA A 297 REMARK 465 GLY A 298 REMARK 465 LYS A 299 REMARK 465 TYR A 300 REMARK 465 ASP A 301 REMARK 465 ILE A 302 REMARK 465 LYS A 303 REMARK 465 ASP A 304 REMARK 465 VAL A 305 REMARK 465 GLY A 306 REMARK 465 VAL A 307 REMARK 465 ASP A 308 REMARK 465 ASN A 309 REMARK 465 ALA A 310 REMARK 465 GLY A 311 REMARK 465 SER A 476 REMARK 465 GLY A 477 REMARK 465 ARG A 478 REMARK 465 GLN A 479 REMARK 465 THR A 480 REMARK 465 SER B 60 REMARK 465 ARG B 61 REMARK 465 SER B 62 REMARK 465 ALA B 63 REMARK 465 GLU B 64 REMARK 465 ILE B 65 REMARK 465 PHE B 66 REMARK 465 PRO B 67 REMARK 465 ARG B 68 REMARK 465 ASP B 69 REMARK 465 SER B 70 REMARK 465 ASN B 71 REMARK 465 LEU B 72 REMARK 465 LYS B 73 REMARK 465 ASP B 74 REMARK 465 LYS B 75 REMARK 465 PHE B 76 REMARK 465 ILE B 77 REMARK 465 LYS B 78 REMARK 465 HIS B 79 REMARK 465 PHE B 80 REMARK 465 THR B 81 REMARK 465 GLY B 82 REMARK 465 PRO B 83 REMARK 465 VAL B 84 REMARK 465 GLY B 289 REMARK 465 GLY B 290 REMARK 465 TYR B 291 REMARK 465 ALA B 292 REMARK 465 PHE B 293 REMARK 465 LYS B 294 REMARK 465 TYR B 295 REMARK 465 ALA B 296 REMARK 465 ALA B 297 REMARK 465 GLY B 298 REMARK 465 LYS B 299 REMARK 465 TYR B 300 REMARK 465 ASP B 301 REMARK 465 ILE B 302 REMARK 465 LYS B 303 REMARK 465 ASP B 304 REMARK 465 VAL B 305 REMARK 465 GLY B 306 REMARK 465 VAL B 307 REMARK 465 ASP B 308 REMARK 465 ASN B 309 REMARK 465 ALA B 310 REMARK 465 GLY B 311 REMARK 465 SER B 476 REMARK 465 GLY B 477 REMARK 465 ARG B 478 REMARK 465 GLN B 479 REMARK 465 THR B 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 87 OG REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 TYR A 99 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 115 NE CZ NH1 NH2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 125 CG CD1 CD2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 150 CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 LYS A 158 CE NZ REMARK 470 ASP A 165 CG OD1 OD2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 GLN A 196 CD OE1 NE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 251 CD CE NZ REMARK 470 LEU A 259 CG CD1 CD2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 LYS A 266 CD CE NZ REMARK 470 LYS A 313 CE NZ REMARK 470 ASP A 321 CG OD1 OD2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 ASP A 331 CG OD1 OD2 REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 LYS A 375 CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 GLU A 415 CD OE1 OE2 REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 LYS A 429 CG CD CE NZ REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 LYS A 437 CD CE NZ REMARK 470 GLU A 446 CG CD OE1 OE2 REMARK 470 GLN A 449 CD OE1 NE2 REMARK 470 LYS A 450 CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 92 CD CE NZ REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 THR B 101 OG1 CG2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ARG B 112 CD NE CZ NH1 NH2 REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 ASP B 165 CG OD1 OD2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLN B 173 CD OE1 NE2 REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 GLU B 202 CG CD OE1 OE2 REMARK 470 THR B 204 OG1 CG2 REMARK 470 ASP B 211 CG OD1 OD2 REMARK 470 LYS B 212 CD CE NZ REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 GLU B 262 CG CD OE1 OE2 REMARK 470 LYS B 264 CD CE NZ REMARK 470 LYS B 266 CE NZ REMARK 470 GLU B 277 CD OE1 OE2 REMARK 470 ILE B 285 CG1 CG2 CD1 REMARK 470 LYS B 313 CE NZ REMARK 470 ASP B 321 CG OD1 OD2 REMARK 470 LYS B 324 CG CD CE NZ REMARK 470 LYS B 326 CE NZ REMARK 470 ILE B 336 CG1 CG2 CD1 REMARK 470 GLU B 345 CD OE1 OE2 REMARK 470 LYS B 375 NZ REMARK 470 LYS B 380 CG CD CE NZ REMARK 470 GLU B 398 CG CD OE1 OE2 REMARK 470 LYS B 401 CG CD CE NZ REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 GLU B 412 CG CD OE1 OE2 REMARK 470 GLU B 415 CG CD OE1 OE2 REMARK 470 LYS B 419 CG CD CE NZ REMARK 470 LYS B 429 CG CD CE NZ REMARK 470 GLU B 433 CG CD OE1 OE2 REMARK 470 GLU B 434 CG CD OE1 OE2 REMARK 470 GLU B 446 CD OE1 OE2 REMARK 470 ILE B 472 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 177 -167.23 -75.68 REMARK 500 HIS A 188 -9.97 -54.75 REMARK 500 VAL A 221 30.80 -95.09 REMARK 500 ILE A 232 -61.07 -104.45 REMARK 500 ASN A 274 106.99 -56.22 REMARK 500 ASP A 333 -168.08 -112.16 REMARK 500 TYR A 407 -54.52 -121.43 REMARK 500 LEU A 409 37.82 -80.70 REMARK 500 ASP A 420 -72.42 -73.93 REMARK 500 VAL B 221 47.05 -107.43 REMARK 500 LEU B 246 75.62 -156.21 REMARK 500 ASP B 333 -167.38 -116.37 REMARK 500 TYR B 407 -51.28 -128.58 REMARK 500 ASP B 420 -71.72 -63.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 7MK7 A 60 129 UNP Q6UXT8 ALKL1_HUMAN 60 129 DBREF1 7MK7 A 130 480 UNP A0A2Y0TBT9_ECOLX DBREF2 7MK7 A A0A2Y0TBT9 32 382 DBREF 7MK7 B 60 129 UNP Q6UXT8 ALKL1_HUMAN 60 129 DBREF1 7MK7 B 130 480 UNP A0A2Y0TBT9_ECOLX DBREF2 7MK7 B A0A2Y0TBT9 32 382 SEQADV 7MK7 ALA A 206 UNP A0A2Y0TBT ASP 108 ENGINEERED MUTATION SEQADV 7MK7 ALA A 207 UNP A0A2Y0TBT LYS 109 ENGINEERED MUTATION SEQADV 7MK7 ALA A 296 UNP A0A2Y0TBT GLU 198 ENGINEERED MUTATION SEQADV 7MK7 ALA A 297 UNP A0A2Y0TBT ASN 199 ENGINEERED MUTATION SEQADV 7MK7 HIS A 339 UNP A0A2Y0TBT ALA 241 ENGINEERED MUTATION SEQADV 7MK7 HIS A 343 UNP A0A2Y0TBT LYS 245 ENGINEERED MUTATION SEQADV 7MK7 ALA A 363 UNP A0A2Y0TBT LYS 265 ENGINEERED MUTATION SEQADV 7MK7 VAL A 436 UNP A0A2Y0TBT ALA 338 ENGINEERED MUTATION SEQADV 7MK7 VAL A 441 UNP A0A2Y0TBT ILE 343 ENGINEERED MUTATION SEQADV 7MK7 ALA B 206 UNP A0A2Y0TBT ASP 108 ENGINEERED MUTATION SEQADV 7MK7 ALA B 207 UNP A0A2Y0TBT LYS 109 ENGINEERED MUTATION SEQADV 7MK7 ALA B 296 UNP A0A2Y0TBT GLU 198 ENGINEERED MUTATION SEQADV 7MK7 ALA B 297 UNP A0A2Y0TBT ASN 199 ENGINEERED MUTATION SEQADV 7MK7 HIS B 339 UNP A0A2Y0TBT ALA 241 ENGINEERED MUTATION SEQADV 7MK7 HIS B 343 UNP A0A2Y0TBT LYS 245 ENGINEERED MUTATION SEQADV 7MK7 ALA B 363 UNP A0A2Y0TBT LYS 265 ENGINEERED MUTATION SEQADV 7MK7 VAL B 436 UNP A0A2Y0TBT ALA 338 ENGINEERED MUTATION SEQADV 7MK7 VAL B 441 UNP A0A2Y0TBT ILE 343 ENGINEERED MUTATION SEQRES 1 A 421 SER ARG SER ALA GLU ILE PHE PRO ARG ASP SER ASN LEU SEQRES 2 A 421 LYS ASP LYS PHE ILE LYS HIS PHE THR GLY PRO VAL THR SEQRES 3 A 421 PHE SER PRO GLU CYS SER LYS HIS PHE HIS ARG LEU TYR SEQRES 4 A 421 TYR ASN THR ARG GLU CYS SER THR PRO ALA TYR TYR LYS SEQRES 5 A 421 ARG CYS ALA ARG LEU LEU THR ARG LEU ALA VAL SER PRO SEQRES 6 A 421 LEU CYS SER GLN THR LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 7 A 421 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 8 A 421 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 9 A 421 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 10 A 421 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 11 A 421 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 12 A 421 ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 13 A 421 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 14 A 421 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 15 A 421 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 16 A 421 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 17 A 421 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 18 A 421 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 19 A 421 LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 20 A 421 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 21 A 421 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 22 A 421 ASP TYR SER ILE ALA GLU HIS ALA PHE ASN HIS GLY GLU SEQRES 23 A 421 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 24 A 421 ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL LEU SEQRES 25 A 421 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 26 A 421 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 27 A 421 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 28 A 421 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 29 A 421 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU VAL SEQRES 30 A 421 LYS ASP PRO ARG VAL ALA ALA THR MET GLU ASN ALA GLN SEQRES 31 A 421 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 32 A 421 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 33 A 421 SER GLY ARG GLN THR SEQRES 1 B 421 SER ARG SER ALA GLU ILE PHE PRO ARG ASP SER ASN LEU SEQRES 2 B 421 LYS ASP LYS PHE ILE LYS HIS PHE THR GLY PRO VAL THR SEQRES 3 B 421 PHE SER PRO GLU CYS SER LYS HIS PHE HIS ARG LEU TYR SEQRES 4 B 421 TYR ASN THR ARG GLU CYS SER THR PRO ALA TYR TYR LYS SEQRES 5 B 421 ARG CYS ALA ARG LEU LEU THR ARG LEU ALA VAL SER PRO SEQRES 6 B 421 LEU CYS SER GLN THR LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 7 B 421 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 8 B 421 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 9 B 421 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 10 B 421 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 11 B 421 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 12 B 421 ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 13 B 421 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 14 B 421 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 15 B 421 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 16 B 421 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 17 B 421 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 18 B 421 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 19 B 421 LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 20 B 421 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 21 B 421 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 22 B 421 ASP TYR SER ILE ALA GLU HIS ALA PHE ASN HIS GLY GLU SEQRES 23 B 421 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 24 B 421 ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL LEU SEQRES 25 B 421 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 26 B 421 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 27 B 421 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 28 B 421 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 29 B 421 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU VAL SEQRES 30 B 421 LYS ASP PRO ARG VAL ALA ALA THR MET GLU ASN ALA GLN SEQRES 31 B 421 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 32 B 421 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 33 B 421 SER GLY ARG GLN THR HET GLC F 1 12 HET GLC F 2 11 HET GLC C 1 12 HET GLC C 2 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 HOH *14(H2 O) HELIX 1 AA1 SER A 87 ASN A 100 1 14 HELIX 2 AA2 THR A 106 ALA A 108 5 3 HELIX 3 AA3 TYR A 109 SER A 123 1 15 HELIX 4 AA4 PRO A 124 SER A 127 5 4 HELIX 5 AA5 GLY A 140 GLY A 156 1 17 HELIX 6 AA6 LYS A 166 ALA A 175 1 10 HELIX 7 AA7 ARG A 190 SER A 197 1 8 HELIX 8 AA8 ALA A 206 ASP A 211 1 6 HELIX 9 AA9 TYR A 214 ASP A 219 1 6 HELIX 10 AB1 GLU A 255 LYS A 266 1 12 HELIX 11 AB2 GLU A 277 ALA A 286 1 10 HELIX 12 AB3 LYS A 313 ASN A 325 1 13 HELIX 13 AB4 ASP A 333 HIS A 343 1 11 HELIX 14 AB5 GLY A 352 TRP A 354 5 3 HELIX 15 AB6 ALA A 355 ALA A 363 1 9 HELIX 16 AB7 ASN A 396 TYR A 407 1 12 HELIX 17 AB8 THR A 410 LYS A 421 1 12 HELIX 18 AB9 LEU A 428 VAL A 436 1 9 HELIX 19 AC1 ASP A 438 LYS A 450 1 13 HELIX 20 AC2 GLN A 459 ALA A 474 1 16 HELIX 21 AC3 SER B 87 ASN B 100 1 14 HELIX 22 AC4 THR B 106 ALA B 108 5 3 HELIX 23 AC5 TYR B 109 SER B 123 1 15 HELIX 24 AC6 PRO B 124 SER B 127 5 4 HELIX 25 AC7 GLY B 140 GLY B 156 1 17 HELIX 26 AC8 LYS B 166 ALA B 175 1 10 HELIX 27 AC9 ARG B 190 SER B 197 1 8 HELIX 28 AD1 ALA B 206 ASP B 211 1 6 HELIX 29 AD2 TYR B 214 VAL B 221 1 8 HELIX 30 AD3 THR B 252 GLU B 254 5 3 HELIX 31 AD4 GLU B 255 LYS B 264 1 10 HELIX 32 AD5 GLU B 277 ALA B 286 1 10 HELIX 33 AD6 LYS B 313 ASN B 325 1 13 HELIX 34 AD7 ASP B 333 HIS B 343 1 11 HELIX 35 AD8 GLY B 352 TRP B 354 5 3 HELIX 36 AD9 ALA B 355 ASP B 360 1 6 HELIX 37 AE1 ASN B 396 TYR B 407 1 12 HELIX 38 AE2 THR B 410 LYS B 421 1 12 HELIX 39 AE3 LEU B 428 VAL B 436 1 9 HELIX 40 AE4 ASP B 438 GLY B 451 1 14 HELIX 41 AE5 GLN B 459 ALA B 475 1 17 SHEET 1 AA1 6 LYS A 158 GLU A 162 0 SHEET 2 AA1 6 LYS A 130 TRP A 134 1 N LEU A 131 O THR A 160 SHEET 3 AA1 6 ILE A 183 ALA A 187 1 O ILE A 183 N TRP A 134 SHEET 4 AA1 6 PHE A 382 ILE A 390 -1 O GLY A 389 N ILE A 184 SHEET 5 AA1 6 TYR A 230 GLU A 235 -1 N ILE A 232 O LEU A 386 SHEET 6 AA1 6 ALA A 425 VAL A 426 -1 O ALA A 425 N VAL A 234 SHEET 1 AA2 5 LYS A 158 GLU A 162 0 SHEET 2 AA2 5 LYS A 130 TRP A 134 1 N LEU A 131 O THR A 160 SHEET 3 AA2 5 ILE A 183 ALA A 187 1 O ILE A 183 N TRP A 134 SHEET 4 AA2 5 PHE A 382 ILE A 390 -1 O GLY A 389 N ILE A 184 SHEET 5 AA2 5 GLU A 452 ILE A 453 1 O GLU A 452 N VAL A 383 SHEET 1 AA3 2 ARG A 222 TYR A 223 0 SHEET 2 AA3 2 LYS A 226 LEU A 227 -1 O LYS A 226 N TYR A 223 SHEET 1 AA4 3 MET A 348 ASN A 351 0 SHEET 2 AA4 3 SER A 238 ASN A 242 -1 N ILE A 240 O THR A 349 SHEET 3 AA4 3 TYR A 366 THR A 369 -1 O GLY A 367 N TYR A 241 SHEET 1 AA5 6 LYS B 158 GLU B 162 0 SHEET 2 AA5 6 LYS B 130 TRP B 134 1 N LEU B 131 O THR B 160 SHEET 3 AA5 6 ILE B 183 ALA B 187 1 O ILE B 183 N TRP B 134 SHEET 4 AA5 6 PHE B 382 ILE B 390 -1 O SER B 387 N TRP B 186 SHEET 5 AA5 6 TYR B 230 ALA B 236 -1 N GLU B 235 O GLY B 384 SHEET 6 AA5 6 ALA B 425 VAL B 426 -1 O ALA B 425 N VAL B 234 SHEET 1 AA6 5 LYS B 158 GLU B 162 0 SHEET 2 AA6 5 LYS B 130 TRP B 134 1 N LEU B 131 O THR B 160 SHEET 3 AA6 5 ILE B 183 ALA B 187 1 O ILE B 183 N TRP B 134 SHEET 4 AA6 5 PHE B 382 ILE B 390 -1 O SER B 387 N TRP B 186 SHEET 5 AA6 5 GLU B 452 ILE B 453 1 O GLU B 452 N VAL B 383 SHEET 1 AA7 2 ARG B 222 TYR B 223 0 SHEET 2 AA7 2 LYS B 226 LEU B 227 -1 O LYS B 226 N TYR B 223 SHEET 1 AA8 4 SER B 269 LEU B 271 0 SHEET 2 AA8 4 THR B 346 ASN B 351 1 O ALA B 347 N SER B 269 SHEET 3 AA8 4 SER B 238 ASN B 242 -1 N ASN B 242 O ALA B 347 SHEET 4 AA8 4 TYR B 366 THR B 369 -1 O THR B 369 N LEU B 239 SHEET 1 AA9 2 THR B 373 PHE B 374 0 SHEET 2 AA9 2 GLN B 377 PRO B 378 -1 O GLN B 377 N PHE B 374 SSBOND 1 CYS A 90 CYS A 126 1555 1555 2.06 SSBOND 2 CYS A 104 CYS A 113 1555 1555 2.04 SSBOND 3 CYS B 90 CYS B 126 1555 1555 2.07 SSBOND 4 CYS B 104 CYS B 113 1555 1555 2.06 LINK O4 GLC F 1 C1 GLC F 2 1555 1555 1.41 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.40 CRYST1 53.569 56.775 94.408 75.60 77.35 61.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018668 -0.010016 -0.002536 0.00000 SCALE2 0.000000 0.019988 -0.003424 0.00000 SCALE3 0.000000 0.000000 0.011014 0.00000