data_7MKM # _entry.id 7MKM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.352 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7MKM pdb_00007mkm 10.2210/pdb7mkm/pdb WWPDB D_1000256358 ? ? EMDB EMD-23899 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-23899 'associated EM volume' EMDB . EMD-23898 'other EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7MKM _pdbx_database_status.recvd_initial_deposition_date 2021-04-24 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Adams, L.J.' 1 0000-0002-1724-8120 'Fremont, D.H.' 2 0000-0002-8544-2689 'Center for Structural Genomics of Infectious Diseases (CSGID)' 3 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary Immunity IUNIEH 2048 1074-7613 ? ? 54 ? 2399 2416.e6 ;A potently neutralizing SARS-CoV-2 antibody inhibits variants of concern by utilizing unique binding residues in a highly conserved epitope. ; 2021 ? 10.1016/j.immuni.2021.08.016 34481543 ? ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? ? ? ? ? ? ? ? 'A potently neutralizing anti-SARS-CoV-2 antibody inhibits variants of concern by binding a highly conserved epitope.' 2021 ? 10.1101/2021.04.26.441501 33907753 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'VanBlargan, L.A.' 1 ? primary 'Adams, L.J.' 2 ? primary 'Liu, Z.' 3 ? primary 'Chen, R.E.' 4 ? primary 'Gilchuk, P.' 5 ? primary 'Raju, S.' 6 ? primary 'Smith, B.K.' 7 ? primary 'Zhao, H.' 8 ? primary 'Case, J.B.' 9 ? primary 'Winkler, E.S.' 10 ? primary 'Whitener, B.M.' 11 ? primary 'Droit, L.' 12 ? primary 'Aziati, I.D.' 13 ? primary 'Bricker, T.L.' 14 ? primary 'Joshi, A.' 15 ? primary 'Shi, P.Y.' 16 ? primary 'Creanga, A.' 17 ? primary 'Pegu, A.' 18 ? primary 'Handley, S.A.' 19 ? primary 'Wang, D.' 20 ? primary 'Boon, A.C.M.' 21 ? primary 'Crowe Jr., J.E.' 22 ? primary 'Whelan, S.P.J.' 23 ? primary 'Fremont, D.H.' 24 ? primary 'Diamond, M.S.' 25 ? 1 'VanBlargan, L.' 26 ? 1 'Adams, L.' 27 ? 1 'Liu, Z.' 28 ? 1 'Chen, R.E.' 29 ? 1 'Gilchuk, P.' 30 ? 1 'Raju, S.' 31 ? 1 'Smith, B.' 32 ? 1 'Zhao, H.' 33 ? 1 'Case, J.B.' 34 ? 1 'Winkler, E.S.' 35 ? 1 'Whitener, B.' 36 ? 1 'Droit, L.' 37 ? 1 'Aziati, I.' 38 ? 1 'Shi, P.Y.' 39 ? 1 'Creanga, A.' 40 ? 1 'Pegu, A.' 41 ? 1 'Handley, S.' 42 ? 1 'Wang, D.' 43 ? 1 'Boon, A.' 44 ? 1 'Crowe, J.E.' 45 ? 1 'Whelan, S.P.J.' 46 0000-0003-1564-8590 1 'Fremont, D.' 47 ? 1 'Diamond, M.' 48 0000-0002-8791-3165 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7MKM _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 21247.758 1 ? ? 'receptor binding domain (UNP residues 333-520)' ? 2 polymer nat 'SARS2-38 Fv heavy chain' 12490.882 1 ? ? ? ? 3 polymer nat 'SARS2-38 Fv light chain' 11419.787 1 ? ? ? ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHA ; ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHA ; A ? 2 'polypeptide(L)' no no ;QVQLKESGPGLVAPSQSLSITCTVSGFSLTRYGVHWVRQPPGKGLEWLGVIWADGSTYYNSALMSRLSISKDNSKSQVFL NMNSLQTDDTAKYYCARDGRGYDDYWGQGTTLT ; ;QVQLKESGPGLVAPSQSLSITCTVSGFSLTRYGVHWVRQPPGKGLEWLGVIWADGSTYYNSALMSRLSISKDNSKSQVFL NMNSLQTDDTAKYYCARDGRGYDDYWGQGTTLT ; H ? 3 'polypeptide(L)' no no ;QIVLTQSPAIMSASPGEKVTMTCSASSTVSFIYWYQQKPGSSPRLLIYDTSNPASGVPVRFSGSGCGTSYYLTISRMEAE DAATYYCQQWNTYPLTFGAGTKLEL ; ;QIVLTQSPAIMSASPGEKVTMTCSASSTVSFIYWYQQKPGSSPRLLIYDTSNPASGVPVRFSGSGCGTSYYLTISRMEAE DAATYYCQQWNTYPLTFGAGTKLEL ; L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ASN n 1 3 LEU n 1 4 CYS n 1 5 PRO n 1 6 PHE n 1 7 GLY n 1 8 GLU n 1 9 VAL n 1 10 PHE n 1 11 ASN n 1 12 ALA n 1 13 THR n 1 14 ARG n 1 15 PHE n 1 16 ALA n 1 17 SER n 1 18 VAL n 1 19 TYR n 1 20 ALA n 1 21 TRP n 1 22 ASN n 1 23 ARG n 1 24 LYS n 1 25 ARG n 1 26 ILE n 1 27 SER n 1 28 ASN n 1 29 CYS n 1 30 VAL n 1 31 ALA n 1 32 ASP n 1 33 TYR n 1 34 SER n 1 35 VAL n 1 36 LEU n 1 37 TYR n 1 38 ASN n 1 39 SER n 1 40 ALA n 1 41 SER n 1 42 PHE n 1 43 SER n 1 44 THR n 1 45 PHE n 1 46 LYS n 1 47 CYS n 1 48 TYR n 1 49 GLY n 1 50 VAL n 1 51 SER n 1 52 PRO n 1 53 THR n 1 54 LYS n 1 55 LEU n 1 56 ASN n 1 57 ASP n 1 58 LEU n 1 59 CYS n 1 60 PHE n 1 61 THR n 1 62 ASN n 1 63 VAL n 1 64 TYR n 1 65 ALA n 1 66 ASP n 1 67 SER n 1 68 PHE n 1 69 VAL n 1 70 ILE n 1 71 ARG n 1 72 GLY n 1 73 ASP n 1 74 GLU n 1 75 VAL n 1 76 ARG n 1 77 GLN n 1 78 ILE n 1 79 ALA n 1 80 PRO n 1 81 GLY n 1 82 GLN n 1 83 THR n 1 84 GLY n 1 85 LYS n 1 86 ILE n 1 87 ALA n 1 88 ASP n 1 89 TYR n 1 90 ASN n 1 91 TYR n 1 92 LYS n 1 93 LEU n 1 94 PRO n 1 95 ASP n 1 96 ASP n 1 97 PHE n 1 98 THR n 1 99 GLY n 1 100 CYS n 1 101 VAL n 1 102 ILE n 1 103 ALA n 1 104 TRP n 1 105 ASN n 1 106 SER n 1 107 ASN n 1 108 ASN n 1 109 LEU n 1 110 ASP n 1 111 SER n 1 112 LYS n 1 113 VAL n 1 114 GLY n 1 115 GLY n 1 116 ASN n 1 117 TYR n 1 118 ASN n 1 119 TYR n 1 120 LEU n 1 121 TYR n 1 122 ARG n 1 123 LEU n 1 124 PHE n 1 125 ARG n 1 126 LYS n 1 127 SER n 1 128 ASN n 1 129 LEU n 1 130 LYS n 1 131 PRO n 1 132 PHE n 1 133 GLU n 1 134 ARG n 1 135 ASP n 1 136 ILE n 1 137 SER n 1 138 THR n 1 139 GLU n 1 140 ILE n 1 141 TYR n 1 142 GLN n 1 143 ALA n 1 144 GLY n 1 145 SER n 1 146 THR n 1 147 PRO n 1 148 CYS n 1 149 ASN n 1 150 GLY n 1 151 VAL n 1 152 GLU n 1 153 GLY n 1 154 PHE n 1 155 ASN n 1 156 CYS n 1 157 TYR n 1 158 PHE n 1 159 PRO n 1 160 LEU n 1 161 GLN n 1 162 SER n 1 163 TYR n 1 164 GLY n 1 165 PHE n 1 166 GLN n 1 167 PRO n 1 168 THR n 1 169 ASN n 1 170 GLY n 1 171 VAL n 1 172 GLY n 1 173 TYR n 1 174 GLN n 1 175 PRO n 1 176 TYR n 1 177 ARG n 1 178 VAL n 1 179 VAL n 1 180 VAL n 1 181 LEU n 1 182 SER n 1 183 PHE n 1 184 GLU n 1 185 LEU n 1 186 LEU n 1 187 HIS n 1 188 ALA n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 LYS n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 ALA n 2 14 PRO n 2 15 SER n 2 16 GLN n 2 17 SER n 2 18 LEU n 2 19 SER n 2 20 ILE n 2 21 THR n 2 22 CYS n 2 23 THR n 2 24 VAL n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 SER n 2 29 LEU n 2 30 THR n 2 31 ARG n 2 32 TYR n 2 33 GLY n 2 34 VAL n 2 35 HIS n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 PRO n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 LEU n 2 49 GLY n 2 50 VAL n 2 51 ILE n 2 52 TRP n 2 53 ALA n 2 54 ASP n 2 55 GLY n 2 56 SER n 2 57 THR n 2 58 TYR n 2 59 TYR n 2 60 ASN n 2 61 SER n 2 62 ALA n 2 63 LEU n 2 64 MET n 2 65 SER n 2 66 ARG n 2 67 LEU n 2 68 SER n 2 69 ILE n 2 70 SER n 2 71 LYS n 2 72 ASP n 2 73 ASN n 2 74 SER n 2 75 LYS n 2 76 SER n 2 77 GLN n 2 78 VAL n 2 79 PHE n 2 80 LEU n 2 81 ASN n 2 82 MET n 2 83 ASN n 2 84 SER n 2 85 LEU n 2 86 GLN n 2 87 THR n 2 88 ASP n 2 89 ASP n 2 90 THR n 2 91 ALA n 2 92 LYS n 2 93 TYR n 2 94 TYR n 2 95 CYS n 2 96 ALA n 2 97 ARG n 2 98 ASP n 2 99 GLY n 2 100 ARG n 2 101 GLY n 2 102 TYR n 2 103 ASP n 2 104 ASP n 2 105 TYR n 2 106 TRP n 2 107 GLY n 2 108 GLN n 2 109 GLY n 2 110 THR n 2 111 THR n 2 112 LEU n 2 113 THR n 3 1 GLN n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 ALA n 3 10 ILE n 3 11 MET n 3 12 SER n 3 13 ALA n 3 14 SER n 3 15 PRO n 3 16 GLY n 3 17 GLU n 3 18 LYS n 3 19 VAL n 3 20 THR n 3 21 MET n 3 22 THR n 3 23 CYS n 3 24 SER n 3 25 ALA n 3 26 SER n 3 27 SER n 3 28 THR n 3 29 VAL n 3 30 SER n 3 31 PHE n 3 32 ILE n 3 33 TYR n 3 34 TRP n 3 35 TYR n 3 36 GLN n 3 37 GLN n 3 38 LYS n 3 39 PRO n 3 40 GLY n 3 41 SER n 3 42 SER n 3 43 PRO n 3 44 ARG n 3 45 LEU n 3 46 LEU n 3 47 ILE n 3 48 TYR n 3 49 ASP n 3 50 THR n 3 51 SER n 3 52 ASN n 3 53 PRO n 3 54 ALA n 3 55 SER n 3 56 GLY n 3 57 VAL n 3 58 PRO n 3 59 VAL n 3 60 ARG n 3 61 PHE n 3 62 SER n 3 63 GLY n 3 64 SER n 3 65 GLY n 3 66 CYS n 3 67 GLY n 3 68 THR n 3 69 SER n 3 70 TYR n 3 71 TYR n 3 72 LEU n 3 73 THR n 3 74 ILE n 3 75 SER n 3 76 ARG n 3 77 MET n 3 78 GLU n 3 79 ALA n 3 80 GLU n 3 81 ASP n 3 82 ALA n 3 83 ALA n 3 84 THR n 3 85 TYR n 3 86 TYR n 3 87 CYS n 3 88 GLN n 3 89 GLN n 3 90 TRP n 3 91 ASN n 3 92 THR n 3 93 TYR n 3 94 PRO n 3 95 LEU n 3 96 THR n 3 97 PHE n 3 98 GLY n 3 99 ALA n 3 100 GLY n 3 101 THR n 3 102 LYS n 3 103 LEU n 3 104 GLU n 3 105 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 188 _entity_src_gen.gene_src_common_name '2019-nCoV, SARS-CoV-2' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'S, 2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name Human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line Expi293F _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 2 1 sample 1 113 ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 1 105 ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHA ; 333 2 PDB 7MKM 7MKM ? 2 ? 1 3 PDB 7MKM 7MKM ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7MKM A 1 ? 188 ? P0DTC2 333 ? 520 ? 333 520 2 2 7MKM H 1 ? 113 ? 7MKM 1 ? 113 ? 1 113 3 3 7MKM L 1 ? 105 ? 7MKM 1 ? 105 ? 1 105 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7MKM _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7MKM _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3276 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.803 ? 4457 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 13.113 ? 1161 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.047 ? 480 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 572 ? f_plane_restr ? ? # _struct.entry_id 7MKM _struct.title 'SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7MKM _struct_keywords.text ;Glycoprotein, Antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID ; _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 6 ? ASN A 11 ? PHE A 338 ASN A 343 1 ? 6 HELX_P HELX_P2 AA2 TYR A 33 ? ALA A 40 ? TYR A 365 ALA A 372 1 ? 8 HELX_P HELX_P3 AA3 GLY A 72 ? ILE A 78 ? GLY A 404 ILE A 410 1 ? 7 HELX_P HELX_P4 AA4 GLY A 84 ? ASN A 90 ? GLY A 416 ASN A 422 1 ? 7 HELX_P HELX_P5 AA5 SER B 84 ? ASP B 89 ? SER H 84 ASP H 89 1 ? 6 HELX_P HELX_P6 AA6 TYR C 48 ? ASN C 52 ? TYR L 48 ASN L 52 5 ? 5 HELX_P HELX_P7 AA7 GLU C 78 ? ALA C 83 ? GLU L 78 ALA L 83 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 29 SG ? ? A CYS 336 A CYS 361 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? A CYS 148 SG ? ? ? 1_555 A CYS 156 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf4 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 95 SG ? ? H CYS 22 H CYS 95 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf5 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 87 SG ? ? L CYS 23 L CYS 87 1_555 ? ? ? ? ? ? ? 2.038 ? ? covale1 covale one ? A ASN 11 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 343 A NAG 601 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 4 A . ? CYS 336 A PRO 5 A ? PRO 337 A 1 -14.20 2 TYR 93 C . ? TYR 93 L PRO 94 C ? PRO 94 L 1 -17.90 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 23 ? ILE A 26 ? ARG A 355 ILE A 358 AA1 2 VAL A 63 ? ARG A 71 ? VAL A 395 ARG A 403 AA1 3 PRO A 175 ? SER A 182 ? PRO A 507 SER A 514 AA1 4 CYS A 100 ? ASN A 105 ? CYS A 432 ASN A 437 AA1 5 THR A 44 ? CYS A 47 ? THR A 376 CYS A 379 AA2 1 LEU A 120 ? ARG A 122 ? LEU A 452 ARG A 454 AA2 2 LEU A 160 ? SER A 162 ? LEU A 492 SER A 494 AA3 1 TYR A 141 ? GLN A 142 ? TYR A 473 GLN A 474 AA3 2 CYS A 156 ? TYR A 157 ? CYS A 488 TYR A 489 AA4 1 GLN B 3 ? SER B 7 ? GLN H 3 SER H 7 AA4 2 LEU B 18 ? SER B 25 ? LEU H 18 SER H 25 AA4 3 GLN B 77 ? MET B 82 ? GLN H 77 MET H 82 AA4 4 LYS B 71 ? ASP B 72 ? LYS H 71 ASP H 72 AA5 1 GLU B 46 ? LEU B 48 ? GLU H 46 LEU H 48 AA5 2 GLY B 33 ? GLN B 39 ? GLY H 33 GLN H 39 AA5 3 LYS B 92 ? ASP B 98 ? LYS H 92 ASP H 98 AA5 4 TYR B 105 ? THR B 110 ? TYR H 105 THR H 110 AA6 1 VAL C 3 ? THR C 5 ? VAL L 3 THR L 5 AA6 2 VAL C 19 ? ALA C 25 ? VAL L 19 ALA L 25 AA6 3 SER C 69 ? ILE C 74 ? SER L 69 ILE L 74 AA6 4 SER C 62 ? CYS C 66 ? SER L 62 CYS L 66 AA7 1 LEU C 45 ? ILE C 47 ? LEU L 45 ILE L 47 AA7 2 ILE C 32 ? GLN C 36 ? ILE L 32 GLN L 36 AA7 3 TYR C 85 ? GLN C 89 ? TYR L 85 GLN L 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 26 ? N ILE A 358 O VAL A 63 ? O VAL A 395 AA1 2 3 N ILE A 70 ? N ILE A 402 O TYR A 176 ? O TYR A 508 AA1 3 4 O VAL A 179 ? O VAL A 511 N ILE A 102 ? N ILE A 434 AA1 4 5 O VAL A 101 ? O VAL A 433 N LYS A 46 ? N LYS A 378 AA2 1 2 N TYR A 121 ? N TYR A 453 O GLN A 161 ? O GLN A 493 AA3 1 2 N TYR A 141 ? N TYR A 473 O TYR A 157 ? O TYR A 489 AA4 1 2 N LYS B 5 ? N LYS H 5 O THR B 23 ? O THR H 23 AA4 2 3 N CYS B 22 ? N CYS H 22 O VAL B 78 ? O VAL H 78 AA4 3 4 O GLN B 77 ? O GLN H 77 N ASP B 72 ? N ASP H 72 AA5 1 2 O GLU B 46 ? O GLU H 46 N ARG B 38 ? N ARG H 38 AA5 2 3 N HIS B 35 ? N HIS H 35 O ALA B 96 ? O ALA H 96 AA5 3 4 N CYS B 95 ? N CYS H 95 O GLY B 107 ? O GLY H 107 AA6 1 2 N LEU C 4 ? N LEU L 4 O SER C 24 ? O SER L 24 AA6 2 3 N CYS C 23 ? N CYS L 23 O TYR C 70 ? O TYR L 70 AA6 3 4 O SER C 69 ? O SER L 69 N CYS C 66 ? N CYS L 66 AA7 1 2 O ILE C 47 ? O ILE L 47 N TRP C 34 ? N TRP L 34 AA7 2 3 N TYR C 33 ? N TYR L 33 O GLN C 88 ? O GLN L 88 # _atom_sites.entry_id 7MKM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 333 333 THR THR A . n A 1 2 ASN 2 334 334 ASN ASN A . n A 1 3 LEU 3 335 335 LEU LEU A . n A 1 4 CYS 4 336 336 CYS CYS A . n A 1 5 PRO 5 337 337 PRO PRO A . n A 1 6 PHE 6 338 338 PHE PHE A . n A 1 7 GLY 7 339 339 GLY GLY A . n A 1 8 GLU 8 340 340 GLU GLU A . n A 1 9 VAL 9 341 341 VAL VAL A . n A 1 10 PHE 10 342 342 PHE PHE A . n A 1 11 ASN 11 343 343 ASN ASN A . n A 1 12 ALA 12 344 344 ALA ALA A . n A 1 13 THR 13 345 345 THR THR A . n A 1 14 ARG 14 346 346 ARG ARG A . n A 1 15 PHE 15 347 347 PHE PHE A . n A 1 16 ALA 16 348 348 ALA ALA A . n A 1 17 SER 17 349 349 SER SER A . n A 1 18 VAL 18 350 350 VAL VAL A . n A 1 19 TYR 19 351 351 TYR TYR A . n A 1 20 ALA 20 352 352 ALA ALA A . n A 1 21 TRP 21 353 353 TRP TRP A . n A 1 22 ASN 22 354 354 ASN ASN A . n A 1 23 ARG 23 355 355 ARG ARG A . n A 1 24 LYS 24 356 356 LYS LYS A . n A 1 25 ARG 25 357 357 ARG ARG A . n A 1 26 ILE 26 358 358 ILE ILE A . n A 1 27 SER 27 359 359 SER SER A . n A 1 28 ASN 28 360 360 ASN ASN A . n A 1 29 CYS 29 361 361 CYS CYS A . n A 1 30 VAL 30 362 362 VAL VAL A . n A 1 31 ALA 31 363 363 ALA ALA A . n A 1 32 ASP 32 364 364 ASP ASP A . n A 1 33 TYR 33 365 365 TYR TYR A . n A 1 34 SER 34 366 366 SER SER A . n A 1 35 VAL 35 367 367 VAL VAL A . n A 1 36 LEU 36 368 368 LEU LEU A . n A 1 37 TYR 37 369 369 TYR TYR A . n A 1 38 ASN 38 370 370 ASN ASN A . n A 1 39 SER 39 371 371 SER SER A . n A 1 40 ALA 40 372 372 ALA ALA A . n A 1 41 SER 41 373 373 SER SER A . n A 1 42 PHE 42 374 374 PHE PHE A . n A 1 43 SER 43 375 375 SER SER A . n A 1 44 THR 44 376 376 THR THR A . n A 1 45 PHE 45 377 377 PHE PHE A . n A 1 46 LYS 46 378 378 LYS LYS A . n A 1 47 CYS 47 379 379 CYS CYS A . n A 1 48 TYR 48 380 380 TYR TYR A . n A 1 49 GLY 49 381 381 GLY GLY A . n A 1 50 VAL 50 382 382 VAL VAL A . n A 1 51 SER 51 383 383 SER SER A . n A 1 52 PRO 52 384 384 PRO PRO A . n A 1 53 THR 53 385 385 THR THR A . n A 1 54 LYS 54 386 386 LYS LYS A . n A 1 55 LEU 55 387 387 LEU LEU A . n A 1 56 ASN 56 388 388 ASN ASN A . n A 1 57 ASP 57 389 389 ASP ASP A . n A 1 58 LEU 58 390 390 LEU LEU A . n A 1 59 CYS 59 391 391 CYS CYS A . n A 1 60 PHE 60 392 392 PHE PHE A . n A 1 61 THR 61 393 393 THR THR A . n A 1 62 ASN 62 394 394 ASN ASN A . n A 1 63 VAL 63 395 395 VAL VAL A . n A 1 64 TYR 64 396 396 TYR TYR A . n A 1 65 ALA 65 397 397 ALA ALA A . n A 1 66 ASP 66 398 398 ASP ASP A . n A 1 67 SER 67 399 399 SER SER A . n A 1 68 PHE 68 400 400 PHE PHE A . n A 1 69 VAL 69 401 401 VAL VAL A . n A 1 70 ILE 70 402 402 ILE ILE A . n A 1 71 ARG 71 403 403 ARG ARG A . n A 1 72 GLY 72 404 404 GLY GLY A . n A 1 73 ASP 73 405 405 ASP ASP A . n A 1 74 GLU 74 406 406 GLU GLU A . n A 1 75 VAL 75 407 407 VAL VAL A . n A 1 76 ARG 76 408 408 ARG ARG A . n A 1 77 GLN 77 409 409 GLN GLN A . n A 1 78 ILE 78 410 410 ILE ILE A . n A 1 79 ALA 79 411 411 ALA ALA A . n A 1 80 PRO 80 412 412 PRO PRO A . n A 1 81 GLY 81 413 413 GLY GLY A . n A 1 82 GLN 82 414 414 GLN GLN A . n A 1 83 THR 83 415 415 THR THR A . n A 1 84 GLY 84 416 416 GLY GLY A . n A 1 85 LYS 85 417 417 LYS LYS A . n A 1 86 ILE 86 418 418 ILE ILE A . n A 1 87 ALA 87 419 419 ALA ALA A . n A 1 88 ASP 88 420 420 ASP ASP A . n A 1 89 TYR 89 421 421 TYR TYR A . n A 1 90 ASN 90 422 422 ASN ASN A . n A 1 91 TYR 91 423 423 TYR TYR A . n A 1 92 LYS 92 424 424 LYS LYS A . n A 1 93 LEU 93 425 425 LEU LEU A . n A 1 94 PRO 94 426 426 PRO PRO A . n A 1 95 ASP 95 427 427 ASP ASP A . n A 1 96 ASP 96 428 428 ASP ASP A . n A 1 97 PHE 97 429 429 PHE PHE A . n A 1 98 THR 98 430 430 THR THR A . n A 1 99 GLY 99 431 431 GLY GLY A . n A 1 100 CYS 100 432 432 CYS CYS A . n A 1 101 VAL 101 433 433 VAL VAL A . n A 1 102 ILE 102 434 434 ILE ILE A . n A 1 103 ALA 103 435 435 ALA ALA A . n A 1 104 TRP 104 436 436 TRP TRP A . n A 1 105 ASN 105 437 437 ASN ASN A . n A 1 106 SER 106 438 438 SER SER A . n A 1 107 ASN 107 439 439 ASN ASN A . n A 1 108 ASN 108 440 440 ASN ASN A . n A 1 109 LEU 109 441 441 LEU LEU A . n A 1 110 ASP 110 442 442 ASP ASP A . n A 1 111 SER 111 443 443 SER SER A . n A 1 112 LYS 112 444 444 LYS LYS A . n A 1 113 VAL 113 445 445 VAL VAL A . n A 1 114 GLY 114 446 446 GLY GLY A . n A 1 115 GLY 115 447 447 GLY GLY A . n A 1 116 ASN 116 448 448 ASN ASN A . n A 1 117 TYR 117 449 449 TYR TYR A . n A 1 118 ASN 118 450 450 ASN ASN A . n A 1 119 TYR 119 451 451 TYR TYR A . n A 1 120 LEU 120 452 452 LEU LEU A . n A 1 121 TYR 121 453 453 TYR TYR A . n A 1 122 ARG 122 454 454 ARG ARG A . n A 1 123 LEU 123 455 455 LEU LEU A . n A 1 124 PHE 124 456 456 PHE PHE A . n A 1 125 ARG 125 457 457 ARG ARG A . n A 1 126 LYS 126 458 458 LYS LYS A . n A 1 127 SER 127 459 459 SER SER A . n A 1 128 ASN 128 460 460 ASN ASN A . n A 1 129 LEU 129 461 461 LEU LEU A . n A 1 130 LYS 130 462 462 LYS LYS A . n A 1 131 PRO 131 463 463 PRO PRO A . n A 1 132 PHE 132 464 464 PHE PHE A . n A 1 133 GLU 133 465 465 GLU GLU A . n A 1 134 ARG 134 466 466 ARG ARG A . n A 1 135 ASP 135 467 467 ASP ASP A . n A 1 136 ILE 136 468 468 ILE ILE A . n A 1 137 SER 137 469 469 SER SER A . n A 1 138 THR 138 470 470 THR THR A . n A 1 139 GLU 139 471 471 GLU GLU A . n A 1 140 ILE 140 472 472 ILE ILE A . n A 1 141 TYR 141 473 473 TYR TYR A . n A 1 142 GLN 142 474 474 GLN GLN A . n A 1 143 ALA 143 475 475 ALA ALA A . n A 1 144 GLY 144 476 476 GLY GLY A . n A 1 145 SER 145 477 477 SER SER A . n A 1 146 THR 146 478 478 THR THR A . n A 1 147 PRO 147 479 479 PRO PRO A . n A 1 148 CYS 148 480 480 CYS CYS A . n A 1 149 ASN 149 481 481 ASN ASN A . n A 1 150 GLY 150 482 482 GLY GLY A . n A 1 151 VAL 151 483 483 VAL VAL A . n A 1 152 GLU 152 484 484 GLU GLU A . n A 1 153 GLY 153 485 485 GLY GLY A . n A 1 154 PHE 154 486 486 PHE PHE A . n A 1 155 ASN 155 487 487 ASN ASN A . n A 1 156 CYS 156 488 488 CYS CYS A . n A 1 157 TYR 157 489 489 TYR TYR A . n A 1 158 PHE 158 490 490 PHE PHE A . n A 1 159 PRO 159 491 491 PRO PRO A . n A 1 160 LEU 160 492 492 LEU LEU A . n A 1 161 GLN 161 493 493 GLN GLN A . n A 1 162 SER 162 494 494 SER SER A . n A 1 163 TYR 163 495 495 TYR TYR A . n A 1 164 GLY 164 496 496 GLY GLY A . n A 1 165 PHE 165 497 497 PHE PHE A . n A 1 166 GLN 166 498 498 GLN GLN A . n A 1 167 PRO 167 499 499 PRO PRO A . n A 1 168 THR 168 500 500 THR THR A . n A 1 169 ASN 169 501 501 ASN ASN A . n A 1 170 GLY 170 502 502 GLY GLY A . n A 1 171 VAL 171 503 503 VAL VAL A . n A 1 172 GLY 172 504 504 GLY GLY A . n A 1 173 TYR 173 505 505 TYR TYR A . n A 1 174 GLN 174 506 506 GLN GLN A . n A 1 175 PRO 175 507 507 PRO PRO A . n A 1 176 TYR 176 508 508 TYR TYR A . n A 1 177 ARG 177 509 509 ARG ARG A . n A 1 178 VAL 178 510 510 VAL VAL A . n A 1 179 VAL 179 511 511 VAL VAL A . n A 1 180 VAL 180 512 512 VAL VAL A . n A 1 181 LEU 181 513 513 LEU LEU A . n A 1 182 SER 182 514 514 SER SER A . n A 1 183 PHE 183 515 515 PHE PHE A . n A 1 184 GLU 184 516 516 GLU GLU A . n A 1 185 LEU 185 517 517 LEU LEU A . n A 1 186 LEU 186 518 518 LEU LEU A . n A 1 187 HIS 187 519 519 HIS HIS A . n A 1 188 ALA 188 520 520 ALA ALA A . n B 2 1 GLN 1 1 1 GLN GLN H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 LYS 5 5 5 LYS LYS H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 ALA 13 13 13 ALA ALA H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 SER 15 15 15 SER SER H . n B 2 16 GLN 16 16 16 GLN GLN H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 SER 19 19 19 SER SER H . n B 2 20 ILE 20 20 20 ILE ILE H . n B 2 21 THR 21 21 21 THR THR H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 THR 23 23 23 THR THR H . n B 2 24 VAL 24 24 24 VAL VAL H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 SER 28 28 28 SER SER H . n B 2 29 LEU 29 29 29 LEU LEU H . n B 2 30 THR 30 30 30 THR THR H . n B 2 31 ARG 31 31 31 ARG ARG H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 GLY 33 33 33 GLY GLY H . n B 2 34 VAL 34 34 34 VAL VAL H . n B 2 35 HIS 35 35 35 HIS HIS H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 PRO 40 40 40 PRO PRO H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLY 42 42 42 GLY GLY H . n B 2 43 LYS 43 43 43 LYS LYS H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 LEU 48 48 48 LEU LEU H . n B 2 49 GLY 49 49 49 GLY GLY H . n B 2 50 VAL 50 50 50 VAL VAL H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 TRP 52 52 52 TRP TRP H . n B 2 53 ALA 53 53 53 ALA ALA H . n B 2 54 ASP 54 54 54 ASP ASP H . n B 2 55 GLY 55 55 55 GLY GLY H . n B 2 56 SER 56 56 56 SER SER H . n B 2 57 THR 57 57 57 THR THR H . n B 2 58 TYR 58 58 58 TYR TYR H . n B 2 59 TYR 59 59 59 TYR TYR H . n B 2 60 ASN 60 60 60 ASN ASN H . n B 2 61 SER 61 61 61 SER SER H . n B 2 62 ALA 62 62 62 ALA ALA H . n B 2 63 LEU 63 63 63 LEU LEU H . n B 2 64 MET 64 64 64 MET MET H . n B 2 65 SER 65 65 65 SER SER H . n B 2 66 ARG 66 66 66 ARG ARG H . n B 2 67 LEU 67 67 67 LEU LEU H . n B 2 68 SER 68 68 68 SER SER H . n B 2 69 ILE 69 69 69 ILE ILE H . n B 2 70 SER 70 70 70 SER SER H . n B 2 71 LYS 71 71 71 LYS LYS H . n B 2 72 ASP 72 72 72 ASP ASP H . n B 2 73 ASN 73 73 73 ASN ASN H . n B 2 74 SER 74 74 74 SER SER H . n B 2 75 LYS 75 75 75 LYS LYS H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 GLN 77 77 77 GLN GLN H . n B 2 78 VAL 78 78 78 VAL VAL H . n B 2 79 PHE 79 79 79 PHE PHE H . n B 2 80 LEU 80 80 80 LEU LEU H . n B 2 81 ASN 81 81 81 ASN ASN H . n B 2 82 MET 82 82 82 MET MET H . n B 2 83 ASN 83 83 83 ASN ASN H . n B 2 84 SER 84 84 84 SER SER H . n B 2 85 LEU 85 85 85 LEU LEU H . n B 2 86 GLN 86 86 86 GLN GLN H . n B 2 87 THR 87 87 87 THR THR H . n B 2 88 ASP 88 88 88 ASP ASP H . n B 2 89 ASP 89 89 89 ASP ASP H . n B 2 90 THR 90 90 90 THR THR H . n B 2 91 ALA 91 91 91 ALA ALA H . n B 2 92 LYS 92 92 92 LYS LYS H . n B 2 93 TYR 93 93 93 TYR TYR H . n B 2 94 TYR 94 94 94 TYR TYR H . n B 2 95 CYS 95 95 95 CYS CYS H . n B 2 96 ALA 96 96 96 ALA ALA H . n B 2 97 ARG 97 97 97 ARG ARG H . n B 2 98 ASP 98 98 98 ASP ASP H . n B 2 99 GLY 99 99 99 GLY GLY H . n B 2 100 ARG 100 100 100 ARG ARG H . n B 2 101 GLY 101 101 101 GLY GLY H . n B 2 102 TYR 102 102 102 TYR TYR H . n B 2 103 ASP 103 103 103 ASP ASP H . n B 2 104 ASP 104 104 104 ASP ASP H . n B 2 105 TYR 105 105 105 TYR TYR H . n B 2 106 TRP 106 106 106 TRP TRP H . n B 2 107 GLY 107 107 107 GLY GLY H . n B 2 108 GLN 108 108 108 GLN GLN H . n B 2 109 GLY 109 109 109 GLY GLY H . n B 2 110 THR 110 110 110 THR THR H . n B 2 111 THR 111 111 111 THR THR H . n B 2 112 LEU 112 112 112 LEU LEU H . n B 2 113 THR 113 113 113 THR THR H . n C 3 1 GLN 1 1 1 GLN GLN L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 VAL 3 3 3 VAL VAL L . n C 3 4 LEU 4 4 4 LEU LEU L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 SER 7 7 7 SER SER L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 ALA 9 9 9 ALA ALA L . n C 3 10 ILE 10 10 10 ILE ILE L . n C 3 11 MET 11 11 11 MET MET L . n C 3 12 SER 12 12 12 SER SER L . n C 3 13 ALA 13 13 13 ALA ALA L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 PRO 15 15 15 PRO PRO L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 GLU 17 17 17 GLU GLU L . n C 3 18 LYS 18 18 18 LYS LYS L . n C 3 19 VAL 19 19 19 VAL VAL L . n C 3 20 THR 20 20 20 THR THR L . n C 3 21 MET 21 21 21 MET MET L . n C 3 22 THR 22 22 22 THR THR L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 SER 24 24 24 SER SER L . n C 3 25 ALA 25 25 25 ALA ALA L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 SER 27 27 27 SER SER L . n C 3 28 THR 28 28 28 THR THR L . n C 3 29 VAL 29 29 29 VAL VAL L . n C 3 30 SER 30 30 30 SER SER L . n C 3 31 PHE 31 31 31 PHE PHE L . n C 3 32 ILE 32 32 32 ILE ILE L . n C 3 33 TYR 33 33 33 TYR TYR L . n C 3 34 TRP 34 34 34 TRP TRP L . n C 3 35 TYR 35 35 35 TYR TYR L . n C 3 36 GLN 36 36 36 GLN GLN L . n C 3 37 GLN 37 37 37 GLN GLN L . n C 3 38 LYS 38 38 38 LYS LYS L . n C 3 39 PRO 39 39 39 PRO PRO L . n C 3 40 GLY 40 40 40 GLY GLY L . n C 3 41 SER 41 41 41 SER SER L . n C 3 42 SER 42 42 42 SER SER L . n C 3 43 PRO 43 43 43 PRO PRO L . n C 3 44 ARG 44 44 44 ARG ARG L . n C 3 45 LEU 45 45 45 LEU LEU L . n C 3 46 LEU 46 46 46 LEU LEU L . n C 3 47 ILE 47 47 47 ILE ILE L . n C 3 48 TYR 48 48 48 TYR TYR L . n C 3 49 ASP 49 49 49 ASP ASP L . n C 3 50 THR 50 50 50 THR THR L . n C 3 51 SER 51 51 51 SER SER L . n C 3 52 ASN 52 52 52 ASN ASN L . n C 3 53 PRO 53 53 53 PRO PRO L . n C 3 54 ALA 54 54 54 ALA ALA L . n C 3 55 SER 55 55 55 SER SER L . n C 3 56 GLY 56 56 56 GLY GLY L . n C 3 57 VAL 57 57 57 VAL VAL L . n C 3 58 PRO 58 58 58 PRO PRO L . n C 3 59 VAL 59 59 59 VAL VAL L . n C 3 60 ARG 60 60 60 ARG ARG L . n C 3 61 PHE 61 61 61 PHE PHE L . n C 3 62 SER 62 62 62 SER SER L . n C 3 63 GLY 63 63 63 GLY GLY L . n C 3 64 SER 64 64 64 SER SER L . n C 3 65 GLY 65 65 65 GLY GLY L . n C 3 66 CYS 66 66 66 CYS CYS L . n C 3 67 GLY 67 67 67 GLY GLY L . n C 3 68 THR 68 68 68 THR THR L . n C 3 69 SER 69 69 69 SER SER L . n C 3 70 TYR 70 70 70 TYR TYR L . n C 3 71 TYR 71 71 71 TYR TYR L . n C 3 72 LEU 72 72 72 LEU LEU L . n C 3 73 THR 73 73 73 THR THR L . n C 3 74 ILE 74 74 74 ILE ILE L . n C 3 75 SER 75 75 75 SER SER L . n C 3 76 ARG 76 76 76 ARG ARG L . n C 3 77 MET 77 77 77 MET MET L . n C 3 78 GLU 78 78 78 GLU GLU L . n C 3 79 ALA 79 79 79 ALA ALA L . n C 3 80 GLU 80 80 80 GLU GLU L . n C 3 81 ASP 81 81 81 ASP ASP L . n C 3 82 ALA 82 82 82 ALA ALA L . n C 3 83 ALA 83 83 83 ALA ALA L . n C 3 84 THR 84 84 84 THR THR L . n C 3 85 TYR 85 85 85 TYR TYR L . n C 3 86 TYR 86 86 86 TYR TYR L . n C 3 87 CYS 87 87 87 CYS CYS L . n C 3 88 GLN 88 88 88 GLN GLN L . n C 3 89 GLN 89 89 89 GLN GLN L . n C 3 90 TRP 90 90 90 TRP TRP L . n C 3 91 ASN 91 91 91 ASN ASN L . n C 3 92 THR 92 92 92 THR THR L . n C 3 93 TYR 93 93 93 TYR TYR L . n C 3 94 PRO 94 94 94 PRO PRO L . n C 3 95 LEU 95 95 95 LEU LEU L . n C 3 96 THR 96 96 96 THR THR L . n C 3 97 PHE 97 97 97 PHE PHE L . n C 3 98 GLY 98 98 98 GLY GLY L . n C 3 99 ALA 99 99 99 ALA ALA L . n C 3 100 GLY 100 100 100 GLY GLY L . n C 3 101 THR 101 101 101 THR THR L . n C 3 102 LYS 102 102 102 LYS LYS L . n C 3 103 LEU 103 103 103 LEU LEU L . n C 3 104 GLU 104 104 104 GLU GLU L . n C 3 105 LEU 105 105 105 LEU LEU L . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-05-12 2 'Structure model' 2 0 2021-08-04 3 'Structure model' 2 1 2021-12-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' author 'Coordinate replacement' 'Polymer geometry' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Database references' 5 2 'Structure model' 'Derived calculations' 6 2 'Structure model' 'Polymer sequence' 7 2 'Structure model' 'Refinement description' 8 2 'Structure model' 'Source and taxonomy' 9 2 'Structure model' 'Structure summary' 10 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' em_software 4 2 'Structure model' entity 5 2 'Structure model' entity_poly 6 2 'Structure model' entity_poly_seq 7 2 'Structure model' entity_src_gen 8 2 'Structure model' entity_src_nat 9 2 'Structure model' pdbx_poly_seq_scheme 10 2 'Structure model' pdbx_struct_sheet_hbond 11 2 'Structure model' pdbx_validate_close_contact 12 2 'Structure model' pdbx_validate_peptide_omega 13 2 'Structure model' pdbx_validate_torsion 14 2 'Structure model' refine_ls_restr 15 2 'Structure model' software 16 2 'Structure model' struct_conf 17 2 'Structure model' struct_conn 18 2 'Structure model' struct_mon_prot_cis 19 2 'Structure model' struct_ref 20 2 'Structure model' struct_ref_seq 21 2 'Structure model' struct_sheet 22 2 'Structure model' struct_sheet_order 23 2 'Structure model' struct_sheet_range 24 3 'Structure model' citation 25 3 'Structure model' citation_author 26 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.label_seq_id' 14 2 'Structure model' '_atom_site.type_symbol' 15 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 16 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 17 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 18 2 'Structure model' '_atom_site_anisotrop.id' 19 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 20 2 'Structure model' '_em_software.category' 21 2 'Structure model' '_em_software.fitting_id' 22 2 'Structure model' '_em_software.imaging_id' 23 2 'Structure model' '_entity.formula_weight' 24 2 'Structure model' '_entity.pdbx_description' 25 2 'Structure model' '_entity.pdbx_fragment' 26 2 'Structure model' '_entity.src_method' 27 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 28 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 29 2 'Structure model' '_entity_poly.pdbx_strand_id' 30 2 'Structure model' '_entity_poly_seq.entity_id' 31 2 'Structure model' '_entity_poly_seq.mon_id' 32 2 'Structure model' '_entity_poly_seq.num' 33 2 'Structure model' '_entity_src_gen.entity_id' 34 2 'Structure model' '_entity_src_nat.entity_id' 35 2 'Structure model' '_pdbx_poly_seq_scheme.asym_id' 36 2 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 37 2 'Structure model' '_pdbx_poly_seq_scheme.auth_seq_num' 38 2 'Structure model' '_pdbx_poly_seq_scheme.entity_id' 39 2 'Structure model' '_pdbx_poly_seq_scheme.mon_id' 40 2 'Structure model' '_pdbx_poly_seq_scheme.ndb_seq_num' 41 2 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 42 2 'Structure model' '_pdbx_poly_seq_scheme.pdb_seq_num' 43 2 'Structure model' '_pdbx_poly_seq_scheme.pdb_strand_id' 44 2 'Structure model' '_pdbx_poly_seq_scheme.seq_id' 45 2 'Structure model' '_refine_ls_restr.dev_ideal' 46 2 'Structure model' '_refine_ls_restr.number' 47 2 'Structure model' '_software.version' 48 2 'Structure model' '_struct_conn.pdbx_dist_value' 49 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 50 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 51 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 52 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 53 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 54 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 55 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 56 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 57 2 'Structure model' '_struct_ref.db_code' 58 2 'Structure model' '_struct_ref.db_name' 59 2 'Structure model' '_struct_ref.pdbx_align_begin' 60 2 'Structure model' '_struct_ref.pdbx_db_accession' 61 2 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 62 2 'Structure model' '_struct_ref_seq.db_align_beg' 63 2 'Structure model' '_struct_ref_seq.db_align_end' 64 2 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 65 2 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 66 2 'Structure model' '_struct_ref_seq.pdbx_db_accession' 67 2 'Structure model' '_struct_ref_seq.pdbx_strand_id' 68 2 'Structure model' '_struct_ref_seq.seq_align_end' 69 2 'Structure model' '_struct_sheet.number_strands' 70 3 'Structure model' '_database_2.pdbx_DOI' 71 3 'Structure model' '_database_2.pdbx_database_accession' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7MKM _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.entry_id 7MKM _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7MKM _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 272007 _em_3d_reconstruction.resolution 3.16 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'SARS-CoV-2 spike bound by SARS2-38 antibody Fab' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7MKM _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7MKM _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7MKM _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 H _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 7 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 H _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 21 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 353 ? ? -59.44 170.08 2 1 ASN A 448 ? ? -104.84 76.66 3 1 LEU A 517 ? ? -109.82 66.59 4 1 LYS H 75 ? ? 83.00 -1.70 5 1 ASP H 103 ? ? -150.77 47.54 6 1 TYR L 48 ? ? -113.41 -164.14 7 1 SER L 51 ? ? 58.96 19.96 8 1 SER L 69 ? ? -170.16 122.32 9 1 MET L 77 ? ? 57.90 -142.82 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? cryoSPARC 3.1.0 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' 75N93019C00062 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' HHSN272201700060C 2 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #