data_7MKT # _entry.id 7MKT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7MKT pdb_00007mkt 10.2210/pdb7mkt/pdb WWPDB D_1000256452 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7MKT _pdbx_database_status.recvd_initial_deposition_date 2021-04-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bingman, C.A.' 1 0000-0002-3073-5089 'Roschdi, S.' 2 0000-0001-6360-6868 'Nomura, Y.' 3 0000-0002-8275-4468 'Butcher, S.E.' 4 0000-0002-3373-6220 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 29 _citation.language ? _citation.page_first 1113 _citation.page_last 1121 _citation.title 'An atypical RNA quadruplex marks RNAs as vectors for gene silencing.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-022-00854-z _citation.pdbx_database_id_PubMed 36352138 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Roschdi, S.' 1 0000-0001-6360-6868 primary 'Yan, J.' 2 ? primary 'Nomura, Y.' 3 0000-0002-8275-4468 primary 'Escobar, C.A.' 4 ? primary 'Petersen, R.J.' 5 0000-0003-3598-0507 primary 'Bingman, C.A.' 6 0000-0002-3073-5089 primary 'Tonelli, M.' 7 ? primary 'Vivek, R.' 8 0000-0002-4233-6317 primary 'Montemayor, E.J.' 9 ? primary 'Wickens, M.' 10 0000-0002-0593-5740 primary 'Kennedy, S.G.' 11 0000-0002-7974-8155 primary 'Butcher, S.E.' 12 0000-0001-6343-6643 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.09 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7MKT _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.475 _cell.length_a_esd ? _cell.length_b 42.483 _cell.length_b_esd ? _cell.length_c 21.607 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*G)-3') ; 7465.337 1 ? ? ? ? 2 non-polymer syn N-METHYLMESOPORPHYRIN 580.716 1 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GUGUGUGUGUGUGUGUGUGUGUG _entity_poly.pdbx_seq_one_letter_code_can GUGUGUGUGUGUGUGUGUGUGUG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 U n 1 5 G n 1 6 U n 1 7 G n 1 8 U n 1 9 G n 1 10 U n 1 11 G n 1 12 U n 1 13 G n 1 14 U n 1 15 G n 1 16 U n 1 17 G n 1 18 U n 1 19 G n 1 20 U n 1 21 G n 1 22 U n 1 23 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 23 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'synthetic construct' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32630 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7MKT _struct_ref.pdbx_db_accession 7MKT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7MKT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7MKT _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 23 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MMP non-polymer . N-METHYLMESOPORPHYRIN ? 'C35 H40 N4 O4' 580.716 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7MKT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;The RNA smaple was prepared by mixing 1.44mM (GU)11G RNA and 1.44 mM NMM in 10 mM Tris, pH 7.03, and 100 mM KCl. An equal volume of RNA sample solution and reservoir solution were mixed and suspended over the reservoir solution consisting of 0.5 M Na/K tartarate, 0.1 M TrisHCl, pH 8.5, 5 mM NaOH. Cryoprotection: reservoir solution supplemented with 30% ethylene glycol. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-09-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si <111>' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1271 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1271 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 63.54 _reflns.entry_id 7MKT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.97 _reflns.d_resolution_low 21.61 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5407 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.02 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.7 _reflns.pdbx_Rmerge_I_obs 0.05163 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.09 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.05684 _reflns.pdbx_Rpim_I_all 0.0231 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.97 _reflns_shell.d_res_low 2.04 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.57 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 529 _reflns_shell.percent_possible_all 99.25 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.7553 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.8172 _reflns_shell.pdbx_Rpim_I_all 0.3083 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.966 _reflns_shell.pdbx_CC_star 0.991 _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 20.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 9.54 _refine.aniso_B[2][2] 9.07 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -29.93 _refine.B_iso_max ? _refine.B_iso_mean 63.361 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.details ;Authors state that 4-way twin law was applied during refinement, while the validation program recalculated with different twin law. This causes the discrepancies between calculated and reported Rwork/Rfree values. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7MKT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.97 _refine.ls_d_res_low 21.61 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4922 _refine.ls_number_reflns_R_free 476 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.35 _refine.ls_percent_reflns_R_free 8.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.27053 _refine.ls_R_factor_R_free 0.29145 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.26869 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.051 _refine.pdbx_overall_ESU_R_Free 0.041 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 3.968 _refine.overall_SU_ML 0.120 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.97 _refine_hist.d_res_low 21.61 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 542 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 493 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 0.012 597 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.019 258 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.072 1.523 928 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.096 2.214 624 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 10.721 10.000 6 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.056 0.200 92 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 338 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 86 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.952 6.716 597 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.949 6.716 596 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.182 10.068 929 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 6.788 68.126 901 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 6.784 68.125 902 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.97 _refine_ls_shell.d_res_low 2.018 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_R_work 356 _refine_ls_shell.percent_reflns_obs 93.09 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.885 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.748 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7MKT _struct.title 'Crystal structure of r(GU)11G-NMM complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7MKT _struct_keywords.text 'RNA-porpyrin complex, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 O6 ? ? ? 1_555 C K . K ? ? A G 1 A K 102 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc2 metalc ? ? A U 2 "O2'" ? ? ? 1_555 F K . K ? ? A U 2 A K 105 1_555 ? ? ? ? ? ? ? 3.264 ? ? metalc3 metalc ? ? A G 3 O6 ? ? ? 1_555 C K . K ? ? A G 3 A K 102 1_555 ? ? ? ? ? ? ? 3.040 ? ? metalc4 metalc ? ? A G 3 O6 ? ? ? 1_555 D K . K ? ? A G 3 A K 103 1_555 ? ? ? ? ? ? ? 2.561 ? ? metalc5 metalc ? ? A G 3 "O3'" ? ? ? 1_555 F K . K ? ? A G 3 A K 105 1_555 ? ? ? ? ? ? ? 3.022 ? ? metalc6 metalc ? ? A G 3 "O2'" ? ? ? 1_555 F K . K ? ? A G 3 A K 105 1_555 ? ? ? ? ? ? ? 3.417 ? ? metalc7 metalc ? ? A U 4 O4 ? ? ? 1_555 E K . K ? ? A U 4 A K 104 1_555 ? ? ? ? ? ? ? 2.805 ? ? metalc8 metalc ? ? A G 5 O6 ? ? ? 1_555 D K . K ? ? A G 5 A K 103 1_555 ? ? ? ? ? ? ? 2.664 ? ? metalc9 metalc ? ? A G 5 O6 ? ? ? 1_555 E K . K ? ? A G 5 A K 104 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc10 metalc ? ? A G 7 O6 ? ? ? 1_555 C K . K ? ? A G 7 A K 102 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc11 metalc ? ? A G 9 O6 ? ? ? 1_555 C K . K ? ? A G 9 A K 102 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc12 metalc ? ? A G 9 O6 ? ? ? 1_555 D K . K ? ? A G 9 A K 103 1_555 ? ? ? ? ? ? ? 2.710 ? ? metalc13 metalc ? ? A U 10 O4 ? ? ? 1_555 E K . K ? ? A U 10 A K 104 1_555 ? ? ? ? ? ? ? 2.756 ? ? metalc14 metalc ? ? A G 11 O6 ? ? ? 1_555 D K . K ? ? A G 11 A K 103 1_555 ? ? ? ? ? ? ? 2.619 ? ? metalc15 metalc ? ? A G 11 O6 ? ? ? 1_555 E K . K ? ? A G 11 A K 104 1_555 ? ? ? ? ? ? ? 3.100 ? ? metalc16 metalc ? ? A G 13 O6 ? ? ? 1_555 C K . K ? ? A G 13 A K 102 1_555 ? ? ? ? ? ? ? 2.732 ? ? metalc17 metalc ? ? A U 14 "O2'" ? ? ? 1_555 H K . K ? ? A U 14 A K 107 1_555 ? ? ? ? ? ? ? 2.892 ? ? metalc18 metalc ? ? A G 15 O6 ? ? ? 1_555 C K . K ? ? A G 15 A K 102 1_555 ? ? ? ? ? ? ? 2.862 ? ? metalc19 metalc ? ? A G 15 O6 ? ? ? 1_555 D K . K ? ? A G 15 A K 103 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc20 metalc ? ? A G 15 "O2'" ? ? ? 1_555 H K . K ? ? A G 15 A K 107 1_555 ? ? ? ? ? ? ? 2.783 ? ? metalc21 metalc ? ? A U 16 O4 ? ? ? 1_555 E K . K ? ? A U 16 A K 104 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc22 metalc ? ? A G 17 O6 ? ? ? 1_555 D K . K ? ? A G 17 A K 103 1_555 ? ? ? ? ? ? ? 2.926 ? ? metalc23 metalc ? ? A G 17 O6 ? ? ? 1_555 E K . K ? ? A G 17 A K 104 1_555 ? ? ? ? ? ? ? 2.913 ? ? metalc24 metalc ? ? A G 19 O6 ? ? ? 1_555 C K . K ? ? A G 19 A K 102 1_555 ? ? ? ? ? ? ? 2.892 ? ? metalc25 metalc ? ? A U 20 "O2'" ? ? ? 1_555 G K . K ? ? A U 20 A K 106 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc26 metalc ? ? A G 21 O6 ? ? ? 1_555 C K . K ? ? A G 21 A K 102 1_555 ? ? ? ? ? ? ? 2.822 ? ? metalc27 metalc ? ? A G 21 O6 ? ? ? 1_555 D K . K ? ? A G 21 A K 103 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc28 metalc ? ? A G 21 "O3'" ? ? ? 1_555 G K . K ? ? A G 21 A K 106 1_555 ? ? ? ? ? ? ? 2.990 ? ? metalc29 metalc ? ? A G 21 "O2'" ? ? ? 1_555 G K . K ? ? A G 21 A K 106 1_555 ? ? ? ? ? ? ? 3.480 ? ? metalc30 metalc ? ? A U 22 O4 ? ? ? 1_555 E K . K ? ? A U 22 A K 104 1_555 ? ? ? ? ? ? ? 2.809 ? ? metalc31 metalc ? ? A U 22 OP1 ? ? ? 1_555 G K . K ? ? A U 22 A K 106 1_555 ? ? ? ? ? ? ? 3.316 ? ? metalc32 metalc ? ? A G 23 O6 ? ? ? 1_555 D K . K ? ? A G 23 A K 103 1_555 ? ? ? ? ? ? ? 2.890 ? ? metalc33 metalc ? ? A G 23 O6 ? ? ? 1_555 E K . K ? ? A G 23 A K 104 1_555 ? ? ? ? ? ? ? 2.878 ? ? hydrog1 hydrog ? ? A G 1 N7 ? ? ? 1_555 A G 7 N2 ? ? A G 1 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 O6 ? ? ? 1_555 A G 7 N1 ? ? A G 1 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A G 1 N1 ? ? ? 1_555 A G 19 O6 ? ? A G 1 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A G 1 N2 ? ? ? 1_555 A G 19 N7 ? ? A G 1 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A G 9 O6 ? ? A G 3 A G 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A G 9 N7 ? ? A G 3 A G 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A G 3 N7 ? ? ? 1_555 A G 21 N2 ? ? A G 3 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A G 21 N1 ? ? A G 3 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 A U 10 N3 ? ? A U 4 A U 10 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A U 22 O4 ? ? A U 4 A U 22 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A G 11 O6 ? ? A G 5 A G 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A G 11 N7 ? ? A G 5 A G 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A G 5 N7 ? ? ? 1_555 A G 23 N2 ? ? A G 5 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A G 23 N1 ? ? A G 5 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A G 7 N7 ? ? ? 1_555 A G 13 N2 ? ? A G 7 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A G 13 N1 ? ? A G 7 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 15 O6 ? ? A G 9 A G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 15 N7 ? ? A G 9 A G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 A U 16 N3 ? ? A U 10 A U 16 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 11 N1 ? ? ? 1_555 A G 17 O6 ? ? A G 11 A G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 17 N7 ? ? A G 11 A G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 13 N7 ? ? ? 1_555 A G 19 N2 ? ? A G 13 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 13 O6 ? ? ? 1_555 A G 19 N1 ? ? A G 13 A G 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 15 N1 ? ? ? 1_555 A G 21 O6 ? ? A G 15 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 15 N2 ? ? ? 1_555 A G 21 N7 ? ? A G 15 A G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A U 16 O4 ? ? ? 1_555 A U 22 N3 ? ? A U 16 A U 22 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 17 N1 ? ? ? 1_555 A G 23 O6 ? ? A G 17 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 17 N2 ? ? ? 1_555 A G 23 N7 ? ? A G 17 A G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7MKT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023543 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000039 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023539 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.046281 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMP 1 101 101 MMP MMP A . C 3 K 1 102 200 K K A . D 3 K 1 103 201 K K A . E 3 K 1 104 202 K K A . F 3 K 1 105 302 K K A . G 3 K 1 106 303 K K A . H 3 K 1 107 304 K K A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 1 ? A G 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 3 ? A G 3 ? 1_555 75.6 ? 2 O6 ? A G 1 ? A G 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 7 ? A G 7 ? 1_555 68.1 ? 3 O6 ? A G 3 ? A G 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 7 ? A G 7 ? 1_555 116.5 ? 4 O6 ? A G 1 ? A G 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 9 ? A G 9 ? 1_555 102.3 ? 5 O6 ? A G 3 ? A G 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 9 ? A G 9 ? 1_555 67.3 ? 6 O6 ? A G 7 ? A G 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 9 ? A G 9 ? 1_555 71.8 ? 7 O6 ? A G 1 ? A G 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 108.7 ? 8 O6 ? A G 3 ? A G 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 173.8 ? 9 O6 ? A G 7 ? A G 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 69.6 ? 10 O6 ? A G 9 ? A G 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 13 ? A G 13 ? 1_555 115.0 ? 11 O6 ? A G 1 ? A G 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 169.9 ? 12 O6 ? A G 3 ? A G 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 101.9 ? 13 O6 ? A G 7 ? A G 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 105.2 ? 14 O6 ? A G 9 ? A G 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 67.9 ? 15 O6 ? A G 13 ? A G 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 74.6 ? 16 O6 ? A G 1 ? A G 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 73.1 ? 17 O6 ? A G 3 ? A G 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 110.0 ? 18 O6 ? A G 7 ? A G 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 106.8 ? 19 O6 ? A G 9 ? A G 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 175.3 ? 20 O6 ? A G 13 ? A G 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 68.1 ? 21 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 19 ? A G 19 ? 1_555 116.8 ? 22 O6 ? A G 1 ? A G 1 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 125.2 ? 23 O6 ? A G 3 ? A G 3 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 71.2 ? 24 O6 ? A G 7 ? A G 7 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 166.8 ? 25 O6 ? A G 9 ? A G 9 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 103.5 ? 26 O6 ? A G 13 ? A G 13 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 102.6 ? 27 O6 ? A G 15 ? A G 15 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 61.8 ? 28 O6 ? A G 19 ? A G 19 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 78.8 ? 29 "O2'" ? A U 2 ? A U 2 ? 1_555 K ? F K . ? A K 105 ? 1_555 "O3'" ? A G 3 ? A G 3 ? 1_555 87.3 ? 30 "O2'" ? A U 2 ? A U 2 ? 1_555 K ? F K . ? A K 105 ? 1_555 "O2'" ? A G 3 ? A G 3 ? 1_555 65.2 ? 31 "O3'" ? A G 3 ? A G 3 ? 1_555 K ? F K . ? A K 105 ? 1_555 "O2'" ? A G 3 ? A G 3 ? 1_555 48.4 ? 32 O6 ? A G 3 ? A G 3 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 82.5 ? 33 O6 ? A G 3 ? A G 3 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 9 ? A G 9 ? 1_555 74.4 ? 34 O6 ? A G 5 ? A G 5 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 9 ? A G 9 ? 1_555 84.2 ? 35 O6 ? A G 3 ? A G 3 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 144.7 ? 36 O6 ? A G 5 ? A G 5 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 70.0 ? 37 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 81.0 ? 38 O6 ? A G 3 ? A G 3 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 118.4 ? 39 O6 ? A G 5 ? A G 5 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 137.7 ? 40 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 69.0 ? 41 O6 ? A G 11 ? A G 11 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 15 ? A G 15 ? 1_555 73.9 ? 42 O6 ? A G 3 ? A G 3 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 146.5 ? 43 O6 ? A G 5 ? A G 5 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 103.3 ? 44 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 138.5 ? 45 O6 ? A G 11 ? A G 11 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 64.4 ? 46 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 79.6 ? 47 O6 ? A G 3 ? A G 3 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 82.6 ? 48 O6 ? A G 5 ? A G 5 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 156.7 ? 49 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 108.8 ? 50 O6 ? A G 11 ? A G 11 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 129.9 ? 51 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 65.5 ? 52 O6 ? A G 17 ? A G 17 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 21 ? A G 21 ? 1_555 80.1 ? 53 O6 ? A G 3 ? A G 3 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 76.3 ? 54 O6 ? A G 5 ? A G 5 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 69.1 ? 55 O6 ? A G 9 ? A G 9 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 142.5 ? 56 O6 ? A G 11 ? A G 11 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 112.0 ? 57 O6 ? A G 15 ? A G 15 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 147.5 ? 58 O6 ? A G 17 ? A G 17 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 75.3 ? 59 O6 ? A G 21 ? A G 21 ? 1_555 K ? D K . ? A K 103 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 90.0 ? 60 O4 ? A U 4 ? A U 4 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 5 ? A G 5 ? 1_555 75.0 ? 61 O4 ? A U 4 ? A U 4 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 10 ? A U 10 ? 1_555 76.6 ? 62 O6 ? A G 5 ? A G 5 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 10 ? A U 10 ? 1_555 115.7 ? 63 O4 ? A U 4 ? A U 4 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 104.8 ? 64 O6 ? A G 5 ? A G 5 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 62.2 ? 65 O4 ? A U 10 ? A U 10 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 11 ? A G 11 ? 1_555 71.5 ? 66 O4 ? A U 4 ? A U 4 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 16 ? A U 16 ? 1_555 120.5 ? 67 O6 ? A G 5 ? A G 5 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 16 ? A U 16 ? 1_555 163.2 ? 68 O4 ? A U 10 ? A U 10 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 16 ? A U 16 ? 1_555 76.6 ? 69 O6 ? A G 11 ? A G 11 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 16 ? A U 16 ? 1_555 115.2 ? 70 O4 ? A U 4 ? A U 4 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 161.5 ? 71 O6 ? A G 5 ? A G 5 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 101.9 ? 72 O4 ? A U 10 ? A U 10 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 88.9 ? 73 O6 ? A G 11 ? A G 11 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 59.1 ? 74 O4 ? A U 16 ? A U 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 17 ? A G 17 ? 1_555 65.6 ? 75 O4 ? A U 4 ? A U 4 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 22 ? A U 22 ? 1_555 77.9 ? 76 O6 ? A G 5 ? A G 5 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 22 ? A U 22 ? 1_555 104.6 ? 77 O4 ? A U 10 ? A U 10 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 22 ? A U 22 ? 1_555 123.7 ? 78 O6 ? A G 11 ? A G 11 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 22 ? A U 22 ? 1_555 164.4 ? 79 O4 ? A U 16 ? A U 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 22 ? A U 22 ? 1_555 74.8 ? 80 O6 ? A G 17 ? A G 17 ? 1_555 K ? E K . ? A K 104 ? 1_555 O4 ? A U 22 ? A U 22 ? 1_555 120.2 ? 81 O4 ? A U 4 ? A U 4 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 118.5 ? 82 O6 ? A G 5 ? A G 5 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 68.4 ? 83 O4 ? A U 10 ? A U 10 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 164.5 ? 84 O6 ? A G 11 ? A G 11 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 99.6 ? 85 O4 ? A U 16 ? A U 16 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 96.8 ? 86 O6 ? A G 17 ? A G 17 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 75.6 ? 87 O4 ? A U 22 ? A U 22 ? 1_555 K ? E K . ? A K 104 ? 1_555 O6 ? A G 23 ? A G 23 ? 1_555 66.4 ? 88 "O2'" ? A U 14 ? A U 14 ? 1_555 K ? H K . ? A K 107 ? 1_555 "O2'" ? A G 15 ? A G 15 ? 1_555 73.4 ? 89 "O2'" ? A U 20 ? A U 20 ? 1_555 K ? G K . ? A K 106 ? 1_555 "O3'" ? A G 21 ? A G 21 ? 1_555 92.9 ? 90 "O2'" ? A U 20 ? A U 20 ? 1_555 K ? G K . ? A K 106 ? 1_555 "O2'" ? A G 21 ? A G 21 ? 1_555 73.0 ? 91 "O3'" ? A G 21 ? A G 21 ? 1_555 K ? G K . ? A K 106 ? 1_555 "O2'" ? A G 21 ? A G 21 ? 1_555 48.1 ? 92 "O2'" ? A U 20 ? A U 20 ? 1_555 K ? G K . ? A K 106 ? 1_555 OP1 ? A U 22 ? A U 22 ? 1_555 138.7 ? 93 "O3'" ? A G 21 ? A G 21 ? 1_555 K ? G K . ? A K 106 ? 1_555 OP1 ? A U 22 ? A U 22 ? 1_555 46.4 ? 94 "O2'" ? A G 21 ? A G 21 ? 1_555 K ? G K . ? A K 106 ? 1_555 OP1 ? A U 22 ? A U 22 ? 1_555 80.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-11-02 2 'Structure model' 1 1 2023-02-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _pdbx_entry_details.entry_id 7MKT _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7MKT 'double helix' 7MKT 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 16 1_555 A U 22 1_555 -0.449 -2.850 -0.106 -6.716 1.228 93.278 1 A_U16:U22_A A 16 ? A 22 ? ? ? 1 A G 17 1_555 A G 23 1_555 2.042 3.310 0.078 -5.143 4.433 -85.513 2 A_G17:G23_A A 17 ? A 23 ? 6 3 1 A G 21 1_555 A G 3 1_555 1.720 3.634 0.369 3.106 1.614 -87.602 3 A_G21:G3_A A 21 ? A 3 ? 6 3 1 A G 15 1_555 A G 9 1_555 -1.229 -3.883 -0.081 0.276 1.655 90.459 4 A_G15:G9_A A 15 ? A 9 ? 6 3 1 A G 19 1_555 A G 1 1_555 -1.691 -3.542 -0.204 -1.285 1.827 88.276 5 A_G19:G1_A A 19 ? A 1 ? 6 3 1 A G 13 1_555 A G 7 1_555 1.416 3.686 -0.013 -1.216 1.289 -91.560 6 A_G13:G7_A A 13 ? A 7 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 16 1_555 A U 22 1_555 A G 17 1_555 A G 23 1_555 2.434 2.454 2.128 -55.404 165.364 -63.126 -1.737 1.047 -0.209 -83.947 -28.126 -175.228 1 AA_U16G17:G23U22_AA A 16 ? A 22 ? A 17 ? A 23 ? 1 A G 17 1_555 A G 23 1_555 A G 21 1_555 A G 3 1_555 -0.529 -1.208 3.209 -0.941 3.036 33.440 -2.571 0.766 3.104 5.262 1.631 33.587 2 AA_G17G21:G3G23_AA A 17 ? A 23 ? A 21 ? A 3 ? 1 A G 21 1_555 A G 3 1_555 A G 15 1_555 A G 9 1_555 -1.178 -3.848 0.243 -0.425 -3.870 177.301 -1.924 0.589 0.246 -1.935 0.213 177.303 3 AA_G21G15:G9G3_AA A 21 ? A 3 ? A 15 ? A 9 ? 1 A G 15 1_555 A G 9 1_555 A G 19 1_555 A G 1 1_555 0.987 -3.222 -3.176 -148.256 -98.826 43.494 -2.261 0.481 -0.280 -49.732 74.606 178.305 4 AA_G15G19:G1G9_AA A 15 ? A 9 ? A 19 ? A 1 ? 1 A G 19 1_555 A G 1 1_555 A G 13 1_555 A G 7 1_555 -1.385 -3.648 -0.070 0.457 -0.221 177.555 -1.824 0.693 -0.070 -0.111 -0.229 177.555 5 AA_G19G13:G7G1_AA A 19 ? A 1 ? A 13 ? A 7 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 MMP ? ? MMP ? ? 'SUBJECT OF INVESTIGATION' ? 2 K ? ? K ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-METHYLMESOPORPHYRIN MMP 3 'POTASSIUM ION' K # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.type _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction 1 1 1 ? 'H, K, L' 0.239 2 1 1 ? 'K, H, -L' 0.250 3 1 1 ? '-K, -H, -L' 0.242 4 1 1 ? -h,-k,l 0.269 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #