HEADER HYDROLASE 27-APR-21 7MKZ TITLE PTP1B F225Y MUTANT, OPEN STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1B,PTP-1B; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN1, PTP1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TYROSINE PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.R.TORGESON,R.PAGE,W.PETI REVDAT 3 18-OCT-23 7MKZ 1 REMARK REVDAT 2 24-AUG-22 7MKZ 1 JRNL REVDAT 1 18-MAY-22 7MKZ 0 JRNL AUTH K.R.TORGESON,M.W.CLARKSON,D.GRANATA,K.LINDORFF-LARSEN, JRNL AUTH 2 R.PAGE,W.PETI JRNL TITL CONSERVED CONFORMATIONAL DYNAMICS DETERMINE ENZYME ACTIVITY. JRNL REF SCI ADV V. 8 O5546 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35921420 JRNL DOI 10.1126/SCIADV.ABO5546 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 64808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.360 REMARK 3 FREE R VALUE TEST SET COUNT : 3474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3400 - 4.0900 0.99 2620 139 0.1551 0.1574 REMARK 3 2 4.0900 - 3.2500 1.00 2526 148 0.1399 0.1343 REMARK 3 3 3.2500 - 2.8400 1.00 2499 139 0.1527 0.1916 REMARK 3 4 2.8300 - 2.5800 1.00 2469 151 0.1574 0.1746 REMARK 3 5 2.5800 - 2.3900 1.00 2473 146 0.1548 0.1812 REMARK 3 6 2.3900 - 2.2500 1.00 2478 144 0.1530 0.1734 REMARK 3 7 2.2500 - 2.1400 1.00 2494 129 0.1373 0.1675 REMARK 3 8 2.1400 - 2.0400 1.00 2426 167 0.1450 0.1630 REMARK 3 9 2.0400 - 1.9700 1.00 2475 140 0.1443 0.1560 REMARK 3 10 1.9700 - 1.9000 1.00 2455 154 0.1529 0.1613 REMARK 3 11 1.9000 - 1.8400 1.00 2423 153 0.1476 0.1733 REMARK 3 12 1.8400 - 1.7900 1.00 2435 146 0.1500 0.1958 REMARK 3 13 1.7900 - 1.7400 1.00 2434 144 0.1499 0.2050 REMARK 3 14 1.7400 - 1.7000 1.00 2461 142 0.1546 0.1876 REMARK 3 15 1.7000 - 1.6600 1.00 2424 147 0.1611 0.1878 REMARK 3 16 1.6600 - 1.6200 1.00 2434 127 0.1638 0.2024 REMARK 3 17 1.6200 - 1.5900 0.99 2460 115 0.1735 0.2169 REMARK 3 18 1.5900 - 1.5600 0.99 2448 133 0.1852 0.2173 REMARK 3 19 1.5600 - 1.5300 0.99 2423 124 0.1812 0.1948 REMARK 3 20 1.5300 - 1.5100 0.99 2424 137 0.1870 0.2202 REMARK 3 21 1.5100 - 1.4800 1.00 2428 151 0.2021 0.2029 REMARK 3 22 1.4800 - 1.4600 0.99 2422 138 0.2080 0.2345 REMARK 3 23 1.4600 - 1.4400 0.99 2434 123 0.2277 0.2585 REMARK 3 24 1.4400 - 1.4200 0.99 2397 130 0.2455 0.2531 REMARK 3 25 1.4200 - 1.4000 0.96 2372 107 0.2804 0.3009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.514 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2408 REMARK 3 ANGLE : 1.302 3268 REMARK 3 CHIRALITY : 0.105 353 REMARK 3 PLANARITY : 0.010 422 REMARK 3 DIHEDRAL : 13.368 926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.0400 17.9431 4.0471 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1169 REMARK 3 T33: 0.1094 T12: -0.0254 REMARK 3 T13: -0.0078 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.8154 L22: 1.3332 REMARK 3 L33: 0.5828 L12: 0.2632 REMARK 3 L13: 0.0208 L23: -0.1066 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: -0.0687 S13: -0.0776 REMARK 3 S21: 0.0654 S22: -0.1006 S23: -0.1247 REMARK 3 S31: 0.0377 S32: 0.0448 S33: -0.0168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 1.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5K9V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 7.4, 0.2 M MGCL2, 16% REMARK 280 PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.42867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.21433 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.21433 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.42867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET A 282 REMARK 465 GLY A 283 REMARK 465 ASP A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 VAL A 287 REMARK 465 GLN A 288 REMARK 465 ASP A 289 REMARK 465 GLN A 290 REMARK 465 TRP A 291 REMARK 465 LYS A 292 REMARK 465 GLU A 293 REMARK 465 LEU A 294 REMARK 465 SER A 295 REMARK 465 HIS A 296 REMARK 465 GLU A 297 REMARK 465 ASP A 298 REMARK 465 LEU A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 HIS A 302 REMARK 465 ASN A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 ASP A 240 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 512 O HOH A 732 1.84 REMARK 500 O HOH A 757 O HOH A 778 2.01 REMARK 500 O HOH A 722 O HOH A 757 2.03 REMARK 500 O HOH A 746 O HOH A 757 2.03 REMARK 500 O HOH A 506 O HOH A 659 2.06 REMARK 500 O HOH A 590 O HOH A 757 2.07 REMARK 500 O HOH A 757 O HOH A 779 2.09 REMARK 500 O HOH A 511 O HOH A 749 2.09 REMARK 500 O HOH A 506 O HOH A 637 2.13 REMARK 500 O HOH A 657 O HOH A 760 2.15 REMARK 500 O HOH A 510 O HOH A 769 2.16 REMARK 500 O ILE A 281 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 42 O HOH A 558 3455 2.08 REMARK 500 O HOH A 699 O HOH A 749 4455 2.08 REMARK 500 O HOH A 516 O HOH A 534 2564 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 215 CB CYS A 215 SG 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 137 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 215 -127.38 -135.70 REMARK 500 ILE A 219 -32.76 -131.72 REMARK 500 ILE A 261 107.03 75.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 DBREF 7MKZ A 1 301 UNP P18031 PTN1_HUMAN 1 301 SEQADV 7MKZ GLY A -4 UNP P18031 EXPRESSION TAG SEQADV 7MKZ HIS A -3 UNP P18031 EXPRESSION TAG SEQADV 7MKZ MET A -2 UNP P18031 EXPRESSION TAG SEQADV 7MKZ ALA A -1 UNP P18031 EXPRESSION TAG SEQADV 7MKZ SER A 0 UNP P18031 EXPRESSION TAG SEQADV 7MKZ TYR A 225 UNP P18031 PHE 225 ENGINEERED MUTATION SEQADV 7MKZ HIS A 302 UNP P18031 EXPRESSION TAG SEQADV 7MKZ ASN A 303 UNP P18031 EXPRESSION TAG SEQRES 1 A 308 GLY HIS MET ALA SER MET GLU MET GLU LYS GLU PHE GLU SEQRES 2 A 308 GLN ILE ASP LYS SER GLY SER TRP ALA ALA ILE TYR GLN SEQRES 3 A 308 ASP ILE ARG HIS GLU ALA SER ASP PHE PRO CYS ARG VAL SEQRES 4 A 308 ALA LYS LEU PRO LYS ASN LYS ASN ARG ASN ARG TYR ARG SEQRES 5 A 308 ASP VAL SER PRO PHE ASP HIS SER ARG ILE LYS LEU HIS SEQRES 6 A 308 GLN GLU ASP ASN ASP TYR ILE ASN ALA SER LEU ILE LYS SEQRES 7 A 308 MET GLU GLU ALA GLN ARG SER TYR ILE LEU THR GLN GLY SEQRES 8 A 308 PRO LEU PRO ASN THR CYS GLY HIS PHE TRP GLU MET VAL SEQRES 9 A 308 TRP GLU GLN LYS SER ARG GLY VAL VAL MET LEU ASN ARG SEQRES 10 A 308 VAL MET GLU LYS GLY SER LEU LYS CYS ALA GLN TYR TRP SEQRES 11 A 308 PRO GLN LYS GLU GLU LYS GLU MET ILE PHE GLU ASP THR SEQRES 12 A 308 ASN LEU LYS LEU THR LEU ILE SER GLU ASP ILE LYS SER SEQRES 13 A 308 TYR TYR THR VAL ARG GLN LEU GLU LEU GLU ASN LEU THR SEQRES 14 A 308 THR GLN GLU THR ARG GLU ILE LEU HIS PHE HIS TYR THR SEQRES 15 A 308 THR TRP PRO ASP PHE GLY VAL PRO GLU SER PRO ALA SER SEQRES 16 A 308 PHE LEU ASN PHE LEU PHE LYS VAL ARG GLU SER GLY SER SEQRES 17 A 308 LEU SER PRO GLU HIS GLY PRO VAL VAL VAL HIS CYS SER SEQRES 18 A 308 ALA GLY ILE GLY ARG SER GLY THR TYR CYS LEU ALA ASP SEQRES 19 A 308 THR CYS LEU LEU LEU MET ASP LYS ARG LYS ASP PRO SER SEQRES 20 A 308 SER VAL ASP ILE LYS LYS VAL LEU LEU GLU MET ARG LYS SEQRES 21 A 308 PHE ARG MET GLY LEU ILE GLN THR ALA ASP GLN LEU ARG SEQRES 22 A 308 PHE SER TYR LEU ALA VAL ILE GLU GLY ALA LYS PHE ILE SEQRES 23 A 308 MET GLY ASP SER SER VAL GLN ASP GLN TRP LYS GLU LEU SEQRES 24 A 308 SER HIS GLU ASP LEU GLU PRO HIS ASN HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 CL 4(CL 1-) FORMUL 9 HOH *279(H2 O) HELIX 1 AA1 GLU A 2 GLY A 14 1 13 HELIX 2 AA2 SER A 15 ALA A 27 1 13 HELIX 3 AA3 LEU A 37 ASN A 44 5 8 HELIX 4 AA4 PHE A 52 HIS A 54 5 3 HELIX 5 AA5 THR A 91 LYS A 103 1 13 HELIX 6 AA6 PRO A 188 SER A 201 1 14 HELIX 7 AA7 GLY A 220 ARG A 238 1 19 HELIX 8 AA8 ASP A 240 VAL A 244 5 5 HELIX 9 AA9 ASP A 245 ARG A 254 1 10 HELIX 10 AB1 THR A 263 ILE A 281 1 19 SHEET 1 AA1 9 ARG A 56 LYS A 58 0 SHEET 2 AA1 9 TYR A 66 MET A 74 -1 O ALA A 69 N ILE A 57 SHEET 3 AA1 9 ARG A 79 THR A 84 -1 O TYR A 81 N ILE A 72 SHEET 4 AA1 9 VAL A 211 HIS A 214 1 O VAL A 213 N ILE A 82 SHEET 5 AA1 9 GLY A 106 MET A 109 1 N VAL A 108 O VAL A 212 SHEET 6 AA1 9 THR A 168 TYR A 176 1 O PHE A 174 N VAL A 107 SHEET 7 AA1 9 TYR A 153 ASN A 162 -1 N THR A 154 O HIS A 175 SHEET 8 AA1 9 LEU A 140 ILE A 149 -1 N LYS A 141 O GLU A 161 SHEET 9 AA1 9 MET A 133 PHE A 135 -1 N PHE A 135 O LEU A 140 SHEET 1 AA2 2 MET A 114 GLU A 115 0 SHEET 2 AA2 2 SER A 118 LEU A 119 -1 O SER A 118 N GLU A 115 SITE 1 AC1 6 GLU A 76 LEU A 234 LYS A 248 CL A 407 SITE 2 AC1 6 HOH A 526 HOH A 615 SITE 1 AC2 7 PRO A 89 CYS A 92 MET A 133 PHE A 135 SITE 2 AC2 7 HOH A 509 HOH A 629 HOH A 695 SITE 1 AC3 4 ASP A 48 MET A 258 GLY A 259 GLN A 262 SITE 1 AC4 3 ARG A 24 ARG A 254 GLN A 262 SITE 1 AC5 2 PRO A 38 LYS A 39 SITE 1 AC6 3 ARG A 112 VAL A 113 HIS A 175 SITE 1 AC7 4 ARG A 238 SER A 243 ASP A 245 GOL A 401 CRYST1 88.552 88.552 72.643 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011293 0.006520 0.000000 0.00000 SCALE2 0.000000 0.013040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013766 0.00000