HEADER PROTEIN BINDING 28-APR-21 7MLL TITLE SOLUTION STRUCTURE OF EXENATIDE (EXENDIN-4) IN 30-VOL% TITLE 2 TRIFLUOROETHANOL USING CS-ROSETTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXENDIN-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUE 48-86; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HELODERMA SUSPECTUM; SOURCE 4 ORGANISM_COMMON: GILA MONSTER; SOURCE 5 ORGANISM_TAXID: 8554 KEYWDS ANTI-DIABETIC DRUG, SIGNALING RECEPTOR BINDING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR S.H.MISHRA,S.BHAVARAJU REVDAT 3 14-JUN-23 7MLL 1 REMARK REVDAT 2 22-DEC-21 7MLL 1 JRNL REVDAT 1 19-MAY-21 7MLL 0 JRNL AUTH S.H.MISHRA,S.BHAVARAJU,D.R.SCHMIDT,K.L.CARRICK JRNL TITL FACILITATED STRUCTURE VERIFICATION OF THE BIOPHARMACEUTICAL JRNL TITL 2 PEPTIDE EXENATIDE BY 2D HETERONUCLEAR NMR MAPS. JRNL REF J PHARM BIOMED ANAL V. 203 14136 2021 JRNL REFN ISSN 1873-264X JRNL PMID 34087552 JRNL DOI 10.1016/J.JPBA.2021.114136 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA, ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX DETERMINATION OF REMARK 3 SOLUTION STRUCTURES OF PROTEINS UP TO 40 KDA USING REMARK 3 CS-ROSETTA WITH SPARSE NMR DATA FROM DEUTERATED REMARK 3 SAMPLES" OLIVER F. LANGE; PAOLO ROSSI; NIKOLAOS G. REMARK 3 SGOURAKIS; YIFAN SONG; HSIAU-WEI LEE; JAMES M. REMARK 3 ARAMINI; ASLI ERTEKIN; RONG XIAO; THOMAS B. ACTON; REMARK 3 GAETANO T. MONTELIONE; DAVID BAKER; PROCEEDINGS OF REMARK 3 THE NATIONAL ACADEMY OF SCIENCES 109(27) 10873- REMARK 3 10878 (2012) DOI: 10.1073/PNAS.1203013109 "DE NOVO REMARK 3 STRUCTURE GENERATION USING CHEMICAL SHIFTS FOR REMARK 3 PROTEINS WITH HIGH-SEQUENCE IDENTITY BUT DIFFERENT REMARK 3 FOLDS," YANG SHEN; PHILIP N. BRYAN; YANAN HE; JOHN REMARK 3 ORBAN; DAVID BAKER; AD BAX; PROTEIN SCIENCE 19, REMARK 3 349-356 (2010) DOI: 10.1002/PRO.303 "DE NOVO REMARK 3 PROTEIN STRUCTURE GENERATION FROM INCOMPLETE REMARK 3 CHEMICAL SHIFT ASSIGNMENTS," YANG SHEN; ROBERT REMARK 3 VERNON; DAVID BAKER; AD BAX; J. BIOMOL. NMR 43, 63- REMARK 3 78 (2009) DOI: 10.1007/S10858-008-9288-5 " REMARK 3 CONSISTENT BLIND PROTEIN STRUCTURE GENERATION FROM REMARK 3 NMR CHEMICAL SHIFT DATA," YANG SHEN; OLIVER LANGE; REMARK 3 FRANK DELAGLIO; PAOLO ROSSI; JAMES M. ARAMINI; REMARK 3 GAOHUA LIU; ALEXANDER ELETSKY; YIBING WU; KIRAN K. REMARK 3 SINGARAPU; ALEXANDER LEMAK; ALEXANDR IGNATCHENKO; REMARK 3 CHERYL H. ARROWSMITH; THOMAS SZYPERSKI; GAETANO T. REMARK 3 MONTELIONE; DAVID BAKER; AD BAX; PROCEEDINGS OF REMARK 3 THE NATIONAL ACADEMY OF SCIENCES 105(12) 4685-4690 REMARK 3 (2008) DOI: 10.1073/PNAS.0800256105 (CS-ROSETTA), REMARK 3 FIRAS KHATIB 1, SETH COOPER, MICHAEL D TYKA, KEFAN REMARK 3 XU, ILYA MAKEDON, ZORAN POPOVIC, DAVID BAKER, REMARK 3 FOLDIT PLAYERS - ALGORITHM DISCOVERY BY PROTEIN REMARK 3 FOLDING GAME PLAYERS. JACK B. MAGUIRE HUGH K. REMARK 3 HADDOX DEVIN STRICKLAND SAMER F. HALABIYA BRIAN REMARK 3 COVENTRY JERMEL R. GRIFFIN SURYA V. S. R. K REMARK 3 PULAVARTI MATTHEW CUMMINS DAVID F THIEKER ERIC REMARK 3 KLAVINS THOMAS SZYPERSKI FRANK DIMAIO DAVID BAKER REMARK 3 BRIAN KUHLMAN - PERTURBING THE ENERGY LANDSCAPE REMARK 3 FOR IMPROVED PACKING DURING COMPUTATIONAL PROTEIN REMARK 3 DESIGN (ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-21. REMARK 100 THE DEPOSITION ID IS D_1000256486. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 315 REMARK 210 PH : 5.35 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 13 MM 'NA-' EXENATIDE (EXENDIN REMARK 210 -4), 20 MM 'NA-' SODIUM REMARK 210 PHOSPHATE, 30 % V/V [U-99% 2H] REMARK 210 TFE, 10 % V/V [U-99% 2H] D2O, REMARK 210 0.01 MG/ML 'NA-' DSS, 60 % H2O/ REMARK 210 30%TRIFLUOROETHANOL/10 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC TOCSY; 2D 1H-15N REMARK 210 HSQC TOCSY; 2D 1H-13C HMBC REMARK 210 (CARBONYL SELECTIVE); 1D 13C APT REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 3000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 ALA A 35 74.63 -150.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50886 RELATED DB: BMRB DBREF 7MLL A 1 39 UNP P26349 EXE4_HELSU 48 86 SEQADV 7MLL NH2 A 40 UNP P26349 AMIDATION SEQRES 1 A 40 HIS GLY GLU GLY THR PHE THR SER ASP LEU SER LYS GLN SEQRES 2 A 40 MET GLU GLU GLU ALA VAL ARG LEU PHE ILE GLU TRP LEU SEQRES 3 A 40 LYS ASN GLY GLY PRO SER SER GLY ALA PRO PRO PRO SER SEQRES 4 A 40 NH2 HET NH2 A 40 3 HETNAM NH2 AMINO GROUP FORMUL 1 NH2 H2 N HELIX 1 AA1 ASP A 9 ASN A 28 1 20 HELIX 2 AA2 GLY A 29 SER A 33 5 5 LINK C SER A 39 N NH2 A 40 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1