HEADER HYDROLASE 01-MAY-21 7MOF TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA PLANT AND FUNGI ATYPICAL TITLE 2 DUAL SPECIFICITY PHOSPHATASE 1(ATPFA-DSP1 ) CYS150SER IN COMPLEX WITH TITLE 3 6-DIPHOSPHOINOSITOL 1,2,3,4,5-PENTAKISPHOSPHATE 6-INSP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE DSP1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN PLANT AND FUNGI ATYPICAL DUAL-SPECIFICITY COMPND 5 PHOSPHATASE 1,ATPFA-DSP1,TYROSINE-PROTEIN PHOSPHATASE AT1G05000; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DSP1, PTP135, AT1G05000, T7A14.14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INOSITOL, INOSITOL PYROPHOSPHATE, TRANSFERASE, HYDROLASE, CELL- KEYWDS 2 SIGNALING, PHOSPHATASE, SUBSTRATE RECOGNITION, REACTION MECHANISM, KEYWDS 3 INTERMEDIATE, PHOSPHATE, METAPHOSPHATE, MOLECULAR DYNAMIC KEYWDS 4 SIMULATION, SELF-ACTIVATION, CATALYTIC WATER EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,S.B.SHEARS REVDAT 2 11-MAY-22 7MOF 1 JRNL REVDAT 1 02-MAR-22 7MOF 0 JRNL AUTH H.WANG,L.PERERA,N.JORK,G.ZONG,A.M.RILEY,B.V.L.POTTER, JRNL AUTH 2 H.J.JESSEN,S.B.SHEARS JRNL TITL A STRUCTURAL EXPOSE OF NONCANONICAL MOLECULAR REACTIVITY JRNL TITL 2 WITHIN THE PROTEIN TYROSINE PHOSPHATASE WPD LOOP. JRNL REF NAT COMMUN V. 13 2231 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35468885 JRNL DOI 10.1038/S41467-022-29673-Y REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.112 REMARK 3 R VALUE (WORKING SET) : 0.110 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2391 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2490 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2757 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2489 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3766 ; 2.134 ; 1.693 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5805 ; 1.386 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.482 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;37.427 ;21.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;13.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.307 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2979 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 605 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5245 ; 2.497 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7MOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47561 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M NACL, 100 MM HEPES PH7.2, 50 MM REMARK 280 BETA-MERCAPTOETHANOL AT 298K (3 UL OF 5.5 MG/ML PROTEIN PLUS 1 REMARK 280 UL OF WELL BUFFER IN THE CRYSTALLIZATION DROP). THE FORMED REMARK 280 CRYSTAL WAS SOAKED IN 30% PEG400, 13MM MGCL2, 33MM NAF, 50 MM REMARK 280 BETA-MERCAPTOETHANOL, 66 MM HEPES, PH 7.2, AND 2.5 MM 6-INSP7 REMARK 280 FOR 6 DAYS., VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.44800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.44800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.44800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.44800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.44800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.44800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.44800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.44800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.44800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.44800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.44800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.44800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.44800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.44800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.44800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.44800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.44800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.44800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 619 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 PHE A 47 REMARK 465 THR A 48 REMARK 465 GLU A 49 REMARK 465 GLU A 50 REMARK 465 HIS A 205 REMARK 465 ILE A 206 REMARK 465 PRO A 207 REMARK 465 MET A 208 REMARK 465 SER A 209 REMARK 465 PHE A 210 REMARK 465 SER A 211 REMARK 465 CYS A 212 REMARK 465 SER A 213 REMARK 465 ILE A 214 REMARK 465 ARG A 215 REMARK 465 GLY B 45 REMARK 465 SER B 46 REMARK 465 PHE B 47 REMARK 465 THR B 48 REMARK 465 GLU B 49 REMARK 465 GLU B 50 REMARK 465 SER B 204 REMARK 465 HIS B 205 REMARK 465 ILE B 206 REMARK 465 PRO B 207 REMARK 465 MET B 208 REMARK 465 SER B 209 REMARK 465 PHE B 210 REMARK 465 SER B 211 REMARK 465 CYS B 212 REMARK 465 SER B 213 REMARK 465 ILE B 214 REMARK 465 ARG B 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 121 CD GLU A 121 OE1 0.080 REMARK 500 SER B 106 CB SER B 106 OG -0.349 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 193 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 SER B 106 CA - CB - OG ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG B 181 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 52 -14.51 -160.27 REMARK 500 ILE A 126 79.90 -107.17 REMARK 500 PRO A 127 49.15 -73.29 REMARK 500 SER A 150 -140.38 -125.53 REMARK 500 HIS A 155 -69.67 -98.34 REMARK 500 ALA A 184 -125.04 53.52 REMARK 500 HIS B 52 -10.67 -158.42 REMARK 500 PHE B 123 51.96 -116.42 REMARK 500 SER B 150 -138.55 -124.95 REMARK 500 HIS B 155 -69.60 -102.99 REMARK 500 ALA B 184 -121.53 49.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZKS A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IHP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZKS B 501 DBREF 7MOF A 49 215 UNP Q9ZVN4 DSP1_ARATH 49 215 DBREF 7MOF B 49 215 UNP Q9ZVN4 DSP1_ARATH 49 215 SEQADV 7MOF GLY A 45 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF SER A 46 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF PHE A 47 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF THR A 48 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF SER A 150 UNP Q9ZVN4 CYS 150 ENGINEERED MUTATION SEQADV 7MOF GLY B 45 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF SER B 46 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF PHE B 47 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF THR B 48 UNP Q9ZVN4 EXPRESSION TAG SEQADV 7MOF SER B 150 UNP Q9ZVN4 CYS 150 ENGINEERED MUTATION SEQRES 1 A 171 GLY SER PHE THR GLU GLU LEU HIS LEU ILE PRO PRO LEU SEQRES 2 A 171 ASN PHE SER MET VAL ASP ASN GLY ILE PHE ARG SER GLY SEQRES 3 A 171 PHE PRO ASP SER ALA ASN PHE SER PHE LEU GLN THR LEU SEQRES 4 A 171 GLY LEU ARG SER ILE ILE TYR LEU CYS PRO GLU PRO TYR SEQRES 5 A 171 PRO GLU SER ASN LEU GLN PHE LEU LYS SER ASN GLY ILE SEQRES 6 A 171 ARG LEU PHE GLN PHE GLY ILE GLU GLY ASN LYS GLU PRO SEQRES 7 A 171 PHE VAL ASN ILE PRO ASP HIS LYS ILE ARG MET ALA LEU SEQRES 8 A 171 LYS VAL LEU LEU ASP GLU LYS ASN HIS PRO VAL LEU ILE SEQRES 9 A 171 HIS SER LYS ARG GLY LYS HIS ARG THR GLY CYS LEU VAL SEQRES 10 A 171 GLY CYS LEU ARG LYS LEU GLN LYS TRP CYS LEU THR SER SEQRES 11 A 171 ILE PHE ASP GLU TYR GLN ARG PHE ALA ALA ALA LYS ALA SEQRES 12 A 171 ARG VAL SER ASP GLN ARG PHE MET GLU ILE PHE ASP VAL SEQRES 13 A 171 SER SER PHE SER HIS ILE PRO MET SER PHE SER CYS SER SEQRES 14 A 171 ILE ARG SEQRES 1 B 171 GLY SER PHE THR GLU GLU LEU HIS LEU ILE PRO PRO LEU SEQRES 2 B 171 ASN PHE SER MET VAL ASP ASN GLY ILE PHE ARG SER GLY SEQRES 3 B 171 PHE PRO ASP SER ALA ASN PHE SER PHE LEU GLN THR LEU SEQRES 4 B 171 GLY LEU ARG SER ILE ILE TYR LEU CYS PRO GLU PRO TYR SEQRES 5 B 171 PRO GLU SER ASN LEU GLN PHE LEU LYS SER ASN GLY ILE SEQRES 6 B 171 ARG LEU PHE GLN PHE GLY ILE GLU GLY ASN LYS GLU PRO SEQRES 7 B 171 PHE VAL ASN ILE PRO ASP HIS LYS ILE ARG MET ALA LEU SEQRES 8 B 171 LYS VAL LEU LEU ASP GLU LYS ASN HIS PRO VAL LEU ILE SEQRES 9 B 171 HIS SER LYS ARG GLY LYS HIS ARG THR GLY CYS LEU VAL SEQRES 10 B 171 GLY CYS LEU ARG LYS LEU GLN LYS TRP CYS LEU THR SER SEQRES 11 B 171 ILE PHE ASP GLU TYR GLN ARG PHE ALA ALA ALA LYS ALA SEQRES 12 B 171 ARG VAL SER ASP GLN ARG PHE MET GLU ILE PHE ASP VAL SEQRES 13 B 171 SER SER PHE SER HIS ILE PRO MET SER PHE SER CYS SER SEQRES 14 B 171 ILE ARG HET ZKS A 501 40 HET IHP A 502 36 HET ZKS B 501 40 HETNAM ZKS (1R,2R,3R,4R,5R,6S)-2,3,4,5,6-PENTAKIS(PHOSPHONOOXY) HETNAM 2 ZKS CYCLOHEXYL TRIHYDROGEN DIPHOSPHATE HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 ZKS 2(C6 H19 O27 P7) FORMUL 4 IHP C6 H18 O24 P6 FORMUL 6 HOH *337(H2 O) HELIX 1 AA1 ASP A 73 ALA A 75 5 3 HELIX 2 AA2 ASN A 76 THR A 82 1 7 HELIX 3 AA3 PRO A 97 GLY A 108 1 12 HELIX 4 AA4 PRO A 127 ASP A 140 1 14 HELIX 5 AA5 GLU A 141 HIS A 144 5 4 HELIX 6 AA6 HIS A 155 GLN A 168 1 14 HELIX 7 AA7 CYS A 171 ALA A 184 1 14 HELIX 8 AA8 ALA A 185 ALA A 187 5 3 HELIX 9 AA9 ARG A 188 PHE A 198 1 11 HELIX 10 AB1 VAL A 200 SER A 204 5 5 HELIX 11 AB2 ASP B 73 ALA B 75 5 3 HELIX 12 AB3 ASN B 76 THR B 82 1 7 HELIX 13 AB4 PRO B 97 GLY B 108 1 12 HELIX 14 AB5 PRO B 127 ASP B 140 1 14 HELIX 15 AB6 GLU B 141 HIS B 144 5 4 HELIX 16 AB7 HIS B 155 GLN B 168 1 14 HELIX 17 AB8 CYS B 171 ALA B 184 1 14 HELIX 18 AB9 ALA B 185 ALA B 187 5 3 HELIX 19 AC1 ARG B 188 PHE B 198 1 11 SHEET 1 AA1 5 SER A 60 ASP A 63 0 SHEET 2 AA1 5 ILE A 66 SER A 69 -1 O ILE A 66 N VAL A 62 SHEET 3 AA1 5 VAL A 146 HIS A 149 1 O ILE A 148 N PHE A 67 SHEET 4 AA1 5 SER A 87 TYR A 90 1 N ILE A 89 O HIS A 149 SHEET 5 AA1 5 ARG A 110 GLN A 113 1 O PHE A 112 N TYR A 90 SHEET 1 AA2 5 SER B 60 ASP B 63 0 SHEET 2 AA2 5 ILE B 66 SER B 69 -1 O ILE B 66 N VAL B 62 SHEET 3 AA2 5 VAL B 146 HIS B 149 1 O ILE B 148 N PHE B 67 SHEET 4 AA2 5 SER B 87 TYR B 90 1 N ILE B 89 O HIS B 149 SHEET 5 AA2 5 ARG B 110 GLN B 113 1 O PHE B 112 N ILE B 88 CISPEP 1 GLU A 121 PRO A 122 0 1.93 CISPEP 2 HIS A 144 PRO A 145 0 -5.81 CISPEP 3 GLU B 121 PRO B 122 0 1.15 CISPEP 4 HIS B 144 PRO B 145 0 -3.74 SITE 1 AC1 16 GLY A 118 LYS A 120 SER A 150 LYS A 151 SITE 2 AC1 16 ARG A 152 GLY A 153 LYS A 154 HIS A 155 SITE 3 AC1 16 ARG A 156 LYS A 186 HOH A 601 HOH A 630 SITE 4 AC1 16 HOH A 660 HOH A 680 HOH A 699 HOH A 722 SITE 1 AC2 12 ASN A 125 ILE A 126 PRO A 127 HIS A 129 SITE 2 AC2 12 LYS A 130 HOH A 603 HOH A 606 HOH A 622 SITE 3 AC2 12 HOH A 624 HOH A 642 HOH A 712 LYS B 105 SITE 1 AC3 18 GLY B 118 LYS B 120 SER B 150 LYS B 151 SITE 2 AC3 18 ARG B 152 GLY B 153 LYS B 154 HIS B 155 SITE 3 AC3 18 ARG B 156 LYS B 186 HOH B 601 HOH B 609 SITE 4 AC3 18 HOH B 618 HOH B 619 HOH B 633 HOH B 645 SITE 5 AC3 18 HOH B 686 HOH B 708 CRYST1 124.896 124.896 124.896 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008007 0.00000