data_7MOO # _entry.id 7MOO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7MOO pdb_00007moo 10.2210/pdb7moo/pdb WWPDB D_1000256597 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7MOO _pdbx_database_status.recvd_initial_deposition_date 2021-05-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dantsu, Y.' 1 ? 'Zhang, Y.' 2 ? 'Zhang, W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistryselect _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2365-6549 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 10597 _citation.page_last 10600 _citation.title ;Synthesis of 2'-Deoxy-2'-fluoro-L-cytidine and Fluorinated L-Nucleic Acids for Structural Studies ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/slct.202103202 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dantsu, Y.' 1 ? primary 'Zhang, Y.' 2 ? primary 'Zhang, W.' 3 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 7MOO _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.840 _cell.length_a_esd ? _cell.length_b 43.840 _cell.length_b_esd ? _cell.length_c 41.250 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(0DG)P*(OFC)P*(0DG)P*(0DT)P*(0DA)P*(0DC)P*(0DG)P*(0DC))-3') ; 2445.596 2 ? ? ? ? 2 water nat water 18.015 35 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(0DG)(OFC)(0DG)(0DT)(0DA)(0DC)(0DG)(0DC)' _entity_poly.pdbx_seq_one_letter_code_can GXGTACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 0DG n 1 2 OFC n 1 3 0DG n 1 4 0DT n 1 5 0DA n 1 6 0DC n 1 7 0DG n 1 8 0DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7MOO _struct_ref.pdbx_db_accession 7MOO _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7MOO A 1 ? 8 ? 7MOO 1 ? 8 ? 1 8 2 1 7MOO B 1 ? 8 ? 7MOO 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0DA 'L-DNA linking' . ;2'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MONOPHOSPHATE ; ? 'C10 H14 N5 O6 P' 331.222 0DC 'L-DNA linking' . ;2'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONOPHOSPHATE ; ? 'C9 H14 N3 O7 P' 307.197 0DG 'L-DNA linking' . ;2'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOPHOSPHATE ; ? 'C10 H14 N5 O7 P' 347.221 0DT 'L-DNA linking' . ;2'-DEOXY-L-RIBO-FURANOSYL THYMIDINE-5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 OFC 'L-DNA linking' . '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-L-ribofuranosyl)pyrimidin-2(1H)-one' ? 'C9 H13 F N3 O7 P' 325.188 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7MOO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.01 M Magnesium chloride hexahydrate, 0.05 M MES monohydrate pH 5.6, 1.8 M Lithium sulfate monohydrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-03-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.987 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7MOO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.35 _reflns.d_resolution_low 21.92 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9914 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.8 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.01 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.085 _reflns.pdbx_Rpim_I_all 0.018 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.35 _reflns_shell.d_res_low 1.39 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 718 _reflns_shell.percent_possible_all 97.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.645 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.96 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.371 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -0.00 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.00 _refine.B_iso_max ? _refine.B_iso_mean 22.396 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7MOO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.35 _refine.ls_d_res_low 21.93 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9441 _refine.ls_number_reflns_R_free 458 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.19 _refine.ls_percent_reflns_R_free 4.6 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.18608 _refine.ls_R_factor_R_free 0.22669 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.18434 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7KW4 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.054 _refine.pdbx_overall_ESU_R_Free 0.061 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.979 _refine.overall_SU_ML 0.040 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.35 _refine_hist.d_res_low 21.93 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 359 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 324 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.033 0.026 362 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.046 0.030 202 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.396 2.924 556 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.077 3.507 468 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.146 0.200 62 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.023 0.021 184 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.023 54 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 1.672 2.156 362 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.670 2.156 363 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.504 3.259 557 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 3.333 19.138 492 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 3.280 18.684 486 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.350 _refine_ls_shell.d_res_low 1.385 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_R_work 686 _refine_ls_shell.percent_reflns_obs 97.42 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.339 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.293 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7MOO _struct.title ;L-type DNA containing 2'-fluoro-2'-deoxycytidine ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7MOO _struct_keywords.text 'L-DNA, fluoro modification, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A 0DG 1 "O3'" ? ? ? 1_555 A OFC 2 P ? ? A 0DG 1 A OFC 2 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale2 covale both ? A OFC 2 "O3'" ? ? ? 1_555 A 0DG 3 P ? ? A OFC 2 A 0DG 3 1_555 ? ? ? ? ? ? ? 1.641 ? ? covale3 covale both ? A 0DG 3 "O3'" ? ? ? 1_555 A 0DT 4 P ? ? A 0DG 3 A 0DT 4 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? A 0DT 4 "O3'" ? ? ? 1_555 A 0DA 5 P ? ? A 0DT 4 A 0DA 5 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale5 covale both ? A 0DA 5 "O3'" ? ? ? 1_555 A 0DC 6 P ? ? A 0DA 5 A 0DC 6 1_555 ? ? ? ? ? ? ? 1.580 ? ? covale6 covale both ? A 0DC 6 "O3'" ? ? ? 1_555 A 0DG 7 P ? ? A 0DC 6 A 0DG 7 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale7 covale both ? A 0DG 7 "O3'" ? ? ? 1_555 A 0DC 8 P ? ? A 0DG 7 A 0DC 8 1_555 ? ? ? ? ? ? ? 1.637 ? ? covale8 covale both ? B 0DG 1 "O3'" ? ? ? 1_555 B OFC 2 P ? ? B 0DG 1 B OFC 2 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale9 covale both ? B OFC 2 "O3'" ? ? ? 1_555 B 0DG 3 P ? ? B OFC 2 B 0DG 3 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale10 covale both ? B 0DG 3 "O3'" ? ? ? 1_555 B 0DT 4 P ? ? B 0DG 3 B 0DT 4 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale11 covale both ? B 0DT 4 "O3'" ? ? ? 1_555 B 0DA 5 P ? ? B 0DT 4 B 0DA 5 1_555 ? ? ? ? ? ? ? 1.641 ? ? covale12 covale both ? B 0DA 5 "O3'" ? ? ? 1_555 B 0DC 6 P ? ? B 0DA 5 B 0DC 6 1_555 ? ? ? ? ? ? ? 1.642 ? ? covale13 covale both ? B 0DC 6 "O3'" ? ? ? 1_555 B 0DG 7 P ? ? B 0DC 6 B 0DG 7 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale14 covale both ? B 0DG 7 "O3'" ? ? ? 1_555 B 0DC 8 P ? ? B 0DG 7 B 0DC 8 1_555 ? ? ? ? ? ? ? 1.635 ? ? hydrog1 hydrog ? ? A 0DG 1 N1 ? ? ? 1_555 B 0DC 8 N3 ? ? A 0DG 1 B 0DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A 0DG 1 N2 ? ? ? 1_555 B 0DC 8 O2 ? ? A 0DG 1 B 0DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A 0DG 1 O6 ? ? ? 1_555 B 0DC 8 N4 ? ? A 0DG 1 B 0DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 0DG 3 N1 ? ? ? 1_555 B 0DC 6 N3 ? ? A 0DG 3 B 0DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 0DG 3 N2 ? ? ? 1_555 B 0DC 6 O2 ? ? A 0DG 3 B 0DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 0DG 3 O6 ? ? ? 1_555 B 0DC 6 N4 ? ? A 0DG 3 B 0DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 0DC 6 N3 ? ? ? 1_555 B 0DG 3 N1 ? ? A 0DC 6 B 0DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A 0DC 6 N4 ? ? ? 1_555 B 0DG 3 O6 ? ? A 0DC 6 B 0DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A 0DC 6 O2 ? ? ? 1_555 B 0DG 3 N2 ? ? A 0DC 6 B 0DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A 0DC 8 N3 ? ? ? 1_555 B 0DG 1 N1 ? ? A 0DC 8 B 0DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A 0DC 8 N4 ? ? ? 1_555 B 0DG 1 O6 ? ? A 0DC 8 B 0DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A 0DC 8 O2 ? ? ? 1_555 B 0DG 1 N2 ? ? A 0DC 8 B 0DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 7MOO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022810 _atom_sites.fract_transf_matrix[1][2] 0.013169 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026339 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024242 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 0DG 1 1 1 0DG 0DG A . n A 1 2 OFC 2 2 2 OFC 0FC A . n A 1 3 0DG 3 3 3 0DG 0DG A . n A 1 4 0DT 4 4 4 0DT 0DT A . n A 1 5 0DA 5 5 5 0DA 0DA A . n A 1 6 0DC 6 6 6 0DC 0DC A . n A 1 7 0DG 7 7 7 0DG 0DG A . n A 1 8 0DC 8 8 8 0DC 0DC A . n B 1 1 0DG 1 1 1 0DG 0DG B . n B 1 2 OFC 2 2 2 OFC 0FC B . n B 1 3 0DG 3 3 3 0DG 0DG B . n B 1 4 0DT 4 4 4 0DT 0DT B . n B 1 5 0DA 5 5 5 0DA 0DA B . n B 1 6 0DC 6 6 6 0DC 0DC B . n B 1 7 0DG 7 7 7 0DG 0DG B . n B 1 8 0DC 8 8 8 0DC 0DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 38 HOH HOH A . C 2 HOH 2 102 37 HOH HOH A . C 2 HOH 3 103 8 HOH HOH A . C 2 HOH 4 104 16 HOH HOH A . C 2 HOH 5 105 32 HOH HOH A . C 2 HOH 6 106 25 HOH HOH A . C 2 HOH 7 107 34 HOH HOH A . C 2 HOH 8 108 12 HOH HOH A . C 2 HOH 9 109 9 HOH HOH A . C 2 HOH 10 110 28 HOH HOH A . C 2 HOH 11 111 15 HOH HOH A . C 2 HOH 12 112 39 HOH HOH A . C 2 HOH 13 113 27 HOH HOH A . C 2 HOH 14 114 29 HOH HOH A . C 2 HOH 15 115 40 HOH HOH A . C 2 HOH 16 116 3 HOH HOH A . C 2 HOH 17 117 33 HOH HOH A . C 2 HOH 18 118 36 HOH HOH A . D 2 HOH 1 101 5 HOH HOH B . D 2 HOH 2 102 17 HOH HOH B . D 2 HOH 3 103 6 HOH HOH B . D 2 HOH 4 104 19 HOH HOH B . D 2 HOH 5 105 4 HOH HOH B . D 2 HOH 6 106 20 HOH HOH B . D 2 HOH 7 107 18 HOH HOH B . D 2 HOH 8 108 23 HOH HOH B . D 2 HOH 9 109 31 HOH HOH B . D 2 HOH 10 110 7 HOH HOH B . D 2 HOH 11 111 35 HOH HOH B . D 2 HOH 12 112 1 HOH HOH B . D 2 HOH 13 113 26 HOH HOH B . D 2 HOH 14 114 21 HOH HOH B . D 2 HOH 15 115 30 HOH HOH B . D 2 HOH 16 116 24 HOH HOH B . D 2 HOH 17 117 22 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-16 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7MOO _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A 0DG 1 ? ? "C4'" A 0DG 1 ? ? 1.583 1.512 0.071 0.007 N 2 1 "O4'" A 0DG 1 ? ? "C1'" A 0DG 1 ? ? 1.488 1.420 0.068 0.011 N 3 1 C5 A 0DG 1 ? ? C6 A 0DG 1 ? ? 1.349 1.419 -0.070 0.010 N 4 1 "O4'" A 0DG 3 ? ? "C1'" A 0DG 3 ? ? 1.501 1.420 0.081 0.011 N 5 1 C8 A 0DG 3 ? ? N9 A 0DG 3 ? ? 1.331 1.374 -0.043 0.007 N 6 1 C2 A 0DT 4 ? ? N3 A 0DT 4 ? ? 1.428 1.373 0.055 0.008 N 7 1 N3 A 0DT 4 ? ? C4 A 0DT 4 ? ? 1.330 1.382 -0.052 0.008 N 8 1 C6 A 0DT 4 ? ? N1 A 0DT 4 ? ? 1.433 1.378 0.055 0.007 N 9 1 "O4'" A 0DA 5 ? ? "C4'" A 0DA 5 ? ? 1.369 1.446 -0.077 0.010 N 10 1 "C5'" A 0DG 7 ? ? "C4'" A 0DG 7 ? ? 1.555 1.512 0.043 0.007 N 11 1 C5 A 0DG 7 ? ? C6 A 0DG 7 ? ? 1.350 1.419 -0.069 0.010 N 12 1 C5 A 0DG 7 ? ? N7 A 0DG 7 ? ? 1.337 1.388 -0.051 0.006 N 13 1 N7 A 0DG 7 ? ? C8 A 0DG 7 ? ? 1.350 1.305 0.045 0.006 N 14 1 P A 0DC 8 ? ? "O5'" A 0DC 8 ? ? 1.532 1.593 -0.061 0.010 N 15 1 "C3'" A 0DC 8 ? ? "C2'" A 0DC 8 ? ? 1.426 1.516 -0.090 0.008 N 16 1 N3 A 0DC 8 ? ? C4 A 0DC 8 ? ? 1.386 1.335 0.051 0.007 N 17 1 C5 B 0DG 1 ? ? N7 B 0DG 1 ? ? 1.341 1.388 -0.047 0.006 N 18 1 N7 B 0DG 1 ? ? C8 B 0DG 1 ? ? 1.344 1.305 0.039 0.006 N 19 1 C8 B 0DG 3 ? ? N9 B 0DG 3 ? ? 1.299 1.374 -0.075 0.007 N 20 1 "C3'" B 0DT 4 ? ? "C2'" B 0DT 4 ? ? 1.455 1.516 -0.061 0.008 N 21 1 C5 B 0DT 4 ? ? C6 B 0DT 4 ? ? 1.402 1.339 0.063 0.007 N 22 1 "O3'" B 0DA 5 ? ? "C3'" B 0DA 5 ? ? 1.380 1.419 -0.039 0.006 N 23 1 P B 0DG 7 ? ? "O5'" B 0DG 7 ? ? 1.661 1.593 0.068 0.010 N 24 1 "O4'" B 0DG 7 ? ? "C1'" B 0DG 7 ? ? 1.493 1.420 0.073 0.011 N 25 1 C8 B 0DG 7 ? ? N9 B 0DG 7 ? ? 1.332 1.374 -0.042 0.007 N 26 1 P B 0DC 8 ? ? OP1 B 0DC 8 ? ? 1.330 1.485 -0.155 0.017 N 27 1 P B 0DC 8 ? ? "O5'" B 0DC 8 ? ? 1.664 1.593 0.071 0.010 N 28 1 C2 B 0DC 8 ? ? N3 B 0DC 8 ? ? 1.401 1.353 0.048 0.008 N 29 1 N3 B 0DC 8 ? ? C4 B 0DC 8 ? ? 1.386 1.335 0.051 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A 0DG 1 ? ? N3 A 0DG 1 ? ? C4 A 0DG 1 ? ? 115.38 111.90 3.48 0.50 N 2 1 N3 A 0DG 1 ? ? C4 A 0DG 1 ? ? C5 A 0DG 1 ? ? 123.19 128.60 -5.41 0.50 N 3 1 C5 A 0DG 1 ? ? C6 A 0DG 1 ? ? N1 A 0DG 1 ? ? 115.29 111.50 3.79 0.50 N 4 1 C4 A 0DG 1 ? ? C5 A 0DG 1 ? ? N7 A 0DG 1 ? ? 104.76 110.80 -6.04 0.40 N 5 1 C5 A 0DG 1 ? ? N7 A 0DG 1 ? ? C8 A 0DG 1 ? ? 108.74 104.30 4.44 0.50 N 6 1 N9 A 0DG 1 ? ? C4 A 0DG 1 ? ? C5 A 0DG 1 ? ? 110.79 105.40 5.39 0.40 N 7 1 "O4'" A 0DG 3 ? ? "C1'" A 0DG 3 ? ? "C2'" A 0DG 3 ? ? 110.15 106.80 3.35 0.50 N 8 1 N1 A 0DG 3 ? ? C2 A 0DG 3 ? ? N3 A 0DG 3 ? ? 118.76 123.90 -5.14 0.60 N 9 1 C2 A 0DG 3 ? ? N3 A 0DG 3 ? ? C4 A 0DG 3 ? ? 115.00 111.90 3.10 0.50 N 10 1 "O4'" A 0DT 4 ? ? "C4'" A 0DT 4 ? ? "C3'" A 0DT 4 ? ? 100.15 104.50 -4.35 0.40 N 11 1 C2 A 0DT 4 ? ? N3 A 0DT 4 ? ? C4 A 0DT 4 ? ? 120.65 127.20 -6.55 0.60 N 12 1 N3 A 0DT 4 ? ? C4 A 0DT 4 ? ? C5 A 0DT 4 ? ? 124.25 115.20 9.05 0.60 N 13 1 N3 A 0DT 4 ? ? C4 A 0DT 4 ? ? O4 A 0DT 4 ? ? 113.86 119.90 -6.04 0.60 N 14 1 "C4'" A 0DC 6 ? ? "C3'" A 0DC 6 ? ? "C2'" A 0DC 6 ? ? 96.72 102.20 -5.48 0.70 N 15 1 C4 A 0DC 6 ? ? C5 A 0DC 6 ? ? C6 A 0DC 6 ? ? 114.05 117.40 -3.35 0.50 N 16 1 C5 A 0DC 6 ? ? C6 A 0DC 6 ? ? N1 A 0DC 6 ? ? 124.62 121.00 3.62 0.50 N 17 1 N1 A 0DC 6 ? ? C2 A 0DC 6 ? ? O2 A 0DC 6 ? ? 122.73 118.90 3.83 0.60 N 18 1 N1 A 0DG 7 ? ? C2 A 0DG 7 ? ? N3 A 0DG 7 ? ? 116.82 123.90 -7.08 0.60 N 19 1 C2 A 0DG 7 ? ? N3 A 0DG 7 ? ? C4 A 0DG 7 ? ? 116.69 111.90 4.79 0.50 N 20 1 C5 A 0DG 7 ? ? C6 A 0DG 7 ? ? N1 A 0DG 7 ? ? 114.57 111.50 3.07 0.50 N 21 1 C4 A 0DG 7 ? ? C5 A 0DG 7 ? ? N7 A 0DG 7 ? ? 107.95 110.80 -2.85 0.40 N 22 1 C5 A 0DG 7 ? ? N7 A 0DG 7 ? ? C8 A 0DG 7 ? ? 107.82 104.30 3.52 0.50 N 23 1 N7 A 0DG 7 ? ? C8 A 0DG 7 ? ? N9 A 0DG 7 ? ? 109.84 113.10 -3.26 0.50 N 24 1 N9 A 0DG 7 ? ? C4 A 0DG 7 ? ? C5 A 0DG 7 ? ? 108.30 105.40 2.90 0.40 N 25 1 N3 A 0DG 7 ? ? C2 A 0DG 7 ? ? N2 A 0DG 7 ? ? 124.22 119.90 4.32 0.70 N 26 1 C2 A 0DC 8 ? ? N3 A 0DC 8 ? ? C4 A 0DC 8 ? ? 123.14 119.90 3.24 0.50 N 27 1 N3 A 0DC 8 ? ? C4 A 0DC 8 ? ? C5 A 0DC 8 ? ? 117.73 121.90 -4.17 0.40 N 28 1 N1 B 0DG 1 ? ? C2 B 0DG 1 ? ? N3 B 0DG 1 ? ? 119.36 123.90 -4.54 0.60 N 29 1 C2 B 0DG 1 ? ? N3 B 0DG 1 ? ? C4 B 0DG 1 ? ? 115.11 111.90 3.21 0.50 N 30 1 C4 B 0DG 1 ? ? C5 B 0DG 1 ? ? N7 B 0DG 1 ? ? 108.35 110.80 -2.45 0.40 N 31 1 "O4'" B 0DG 3 ? ? "C1'" B 0DG 3 ? ? N9 B 0DG 3 ? ? 102.13 108.00 -5.87 0.70 N 32 1 C2 B 0DG 3 ? ? N3 B 0DG 3 ? ? C4 B 0DG 3 ? ? 115.90 111.90 4.00 0.50 N 33 1 N3 B 0DG 3 ? ? C4 B 0DG 3 ? ? C5 B 0DG 3 ? ? 124.76 128.60 -3.84 0.50 N 34 1 C5 B 0DG 3 ? ? C6 B 0DG 3 ? ? N1 B 0DG 3 ? ? 115.12 111.50 3.62 0.50 N 35 1 C2 B 0DT 4 ? ? N3 B 0DT 4 ? ? C4 B 0DT 4 ? ? 121.64 127.20 -5.56 0.60 N 36 1 N3 B 0DT 4 ? ? C4 B 0DT 4 ? ? C5 B 0DT 4 ? ? 122.31 115.20 7.11 0.60 N 37 1 N3 B 0DT 4 ? ? C2 B 0DT 4 ? ? O2 B 0DT 4 ? ? 118.55 122.30 -3.75 0.60 N 38 1 "O4'" B 0DA 5 ? ? "C4'" B 0DA 5 ? ? "C3'" B 0DA 5 ? ? 100.84 104.50 -3.66 0.40 N 39 1 "C4'" B 0DA 5 ? ? "C3'" B 0DA 5 ? ? "C2'" B 0DA 5 ? ? 97.69 102.20 -4.51 0.70 N 40 1 "C3'" B 0DA 5 ? ? "C2'" B 0DA 5 ? ? "C1'" B 0DA 5 ? ? 96.83 102.40 -5.57 0.80 N 41 1 "O4'" B 0DC 6 ? ? "C4'" B 0DC 6 ? ? "C3'" B 0DC 6 ? ? 100.63 104.50 -3.87 0.40 N 42 1 C2 B 0DC 6 ? ? N3 B 0DC 6 ? ? C4 B 0DC 6 ? ? 123.11 119.90 3.21 0.50 N 43 1 N3 B 0DC 6 ? ? C4 B 0DC 6 ? ? C5 B 0DC 6 ? ? 118.92 121.90 -2.98 0.40 N 44 1 "O4'" B 0DG 7 ? ? "C4'" B 0DG 7 ? ? "C3'" B 0DG 7 ? ? 100.92 104.50 -3.58 0.40 N 45 1 "O4'" B 0DC 8 ? ? "C4'" B 0DC 8 ? ? "C3'" B 0DC 8 ? ? 110.24 106.00 4.24 0.60 N 46 1 "O4'" B 0DC 8 ? ? "C1'" B 0DC 8 ? ? N1 B 0DC 8 ? ? 112.00 108.30 3.70 0.30 N 47 1 C6 B 0DC 8 ? ? N1 B 0DC 8 ? ? C2 B 0DC 8 ? ? 123.09 120.30 2.79 0.40 N 48 1 N3 B 0DC 8 ? ? C4 B 0DC 8 ? ? C5 B 0DC 8 ? ? 119.23 121.90 -2.67 0.40 N 49 1 N3 B 0DC 8 ? ? C4 B 0DC 8 ? ? N4 B 0DC 8 ? ? 113.31 118.00 -4.69 0.70 N 50 1 C5 B 0DC 8 ? ? C4 B 0DC 8 ? ? N4 B 0DC 8 ? ? 127.40 120.20 7.20 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0DA C8A C Y N 1 0DA N9A N Y N 2 0DA C4A C Y N 3 0DA C5A C Y N 4 0DA N7A N Y N 5 0DA N3A N Y N 6 0DA C2A C Y N 7 0DA N1A N Y N 8 0DA C6A C Y N 9 0DA N6A N N N 10 0DA "C4'" C N S 11 0DA "O4'" O N N 12 0DA "C3'" C N R 13 0DA "C2'" C N N 14 0DA "C1'" C N S 15 0DA "O3'" O N N 16 0DA "C5'" C N N 17 0DA "O5'" O N N 18 0DA P P N N 19 0DA OP2 O N N 20 0DA OP3 O N N 21 0DA OP1 O N N 22 0DA H8A H N N 23 0DA H2A H N N 24 0DA HN61 H N N 25 0DA HN62 H N N 26 0DA "H4'" H N N 27 0DA "H3'" H N N 28 0DA "H2'" H N N 29 0DA "H2''" H N N 30 0DA "H1'" H N N 31 0DA "HO3'" H N N 32 0DA "H5'" H N N 33 0DA "H5''" H N N 34 0DA H2P H N N 35 0DA HOP3 H N N 36 0DC OP3 O N N 37 0DC P P N N 38 0DC OP1 O N N 39 0DC OP2 O N N 40 0DC "O5'" O N N 41 0DC "C5'" C N N 42 0DC "C4'" C N S 43 0DC "O4'" O N N 44 0DC "C3'" C N R 45 0DC "O3'" O N N 46 0DC "C2'" C N N 47 0DC "C1'" C N S 48 0DC N1 N N N 49 0DC C2 C N N 50 0DC O2 O N N 51 0DC N3 N N N 52 0DC C4 C N N 53 0DC N4 N N N 54 0DC C5 C N N 55 0DC C6 C N N 56 0DC HOP3 H N N 57 0DC HOP2 H N N 58 0DC "H5'" H N N 59 0DC "H5''" H N N 60 0DC "H4'" H N N 61 0DC "H3'" H N N 62 0DC "HO3'" H N N 63 0DC "H2'" H N N 64 0DC "H2''" H N N 65 0DC "H1'" H N N 66 0DC H41 H N N 67 0DC H42 H N N 68 0DC H5 H N N 69 0DC H6 H N N 70 0DG OP3 O N N 71 0DG P P N N 72 0DG OP1 O N N 73 0DG OP2 O N N 74 0DG "O5'" O N N 75 0DG "C5'" C N N 76 0DG "C4'" C N S 77 0DG "O4'" O N N 78 0DG "C3'" C N R 79 0DG "O3'" O N N 80 0DG "C2'" C N N 81 0DG "C1'" C N S 82 0DG N9 N Y N 83 0DG C8 C Y N 84 0DG N7 N Y N 85 0DG C5 C Y N 86 0DG C6 C N N 87 0DG O6 O N N 88 0DG N1 N N N 89 0DG C2 C N N 90 0DG N2 N N N 91 0DG N3 N N N 92 0DG C4 C Y N 93 0DG HOP3 H N N 94 0DG HOP2 H N N 95 0DG "H5'" H N N 96 0DG "H5''" H N N 97 0DG "H4'" H N N 98 0DG "H3'" H N N 99 0DG "HO3'" H N N 100 0DG "H2'" H N N 101 0DG "H2''" H N N 102 0DG "H1'" H N N 103 0DG H8 H N N 104 0DG H1 H N N 105 0DG H21 H N N 106 0DG H22 H N N 107 0DT OP3 O N N 108 0DT P P N N 109 0DT OP1 O N N 110 0DT OP2 O N N 111 0DT "O5'" O N N 112 0DT "C5'" C N N 113 0DT "C4'" C N S 114 0DT "O4'" O N N 115 0DT "C3'" C N R 116 0DT "O3'" O N N 117 0DT "C2'" C N N 118 0DT "C1'" C N S 119 0DT N1 N N N 120 0DT C2 C N N 121 0DT O2 O N N 122 0DT N3 N N N 123 0DT C4 C N N 124 0DT O4 O N N 125 0DT C5 C N N 126 0DT C5M C N N 127 0DT C6 C N N 128 0DT HOP3 H N N 129 0DT HOP2 H N N 130 0DT "H5'" H N N 131 0DT "H5''" H N N 132 0DT "H4'" H N N 133 0DT "H3'" H N N 134 0DT "HO3'" H N N 135 0DT "H2'" H N N 136 0DT "H2''" H N N 137 0DT "H1'" H N N 138 0DT H3 H N N 139 0DT H71 H N N 140 0DT H72 H N N 141 0DT H73 H N N 142 0DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 OFC N1 N N N 147 OFC C2 C N N 148 OFC O2 O N N 149 OFC P P N N 150 OFC N3 N N N 151 OFC C4 C N N 152 OFC N4 N N N 153 OFC C5 C N N 154 OFC C6 C N N 155 OFC "C1'" C N S 156 OFC "O4'" O N N 157 OFC "C2'" C N S 158 OFC "F2'" F N N 159 OFC "C3'" C N S 160 OFC "O3'" O N N 161 OFC "C4'" C N S 162 OFC "C5'" C N N 163 OFC "O5'" O N N 164 OFC OP1 O N N 165 OFC OP2 O N N 166 OFC H41 H N N 167 OFC H42 H N N 168 OFC H5 H N N 169 OFC H6 H N N 170 OFC "H1'" H N N 171 OFC "H2'" H N N 172 OFC "H3'" H N N 173 OFC "HO3'" H N N 174 OFC "H4'" H N N 175 OFC "H5'" H N N 176 OFC "H5''" H N N 177 OFC HOP2 H N N 178 OFC OP3 O N N 179 OFC HOP3 H N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DA C8A N9A sing Y N 1 0DA C8A N7A doub Y N 2 0DA N9A C4A sing Y N 3 0DA N9A "C1'" sing N N 4 0DA C4A C5A doub Y N 5 0DA C4A N3A sing Y N 6 0DA C5A N7A sing Y N 7 0DA C5A C6A sing Y N 8 0DA N3A C2A doub Y N 9 0DA C2A N1A sing Y N 10 0DA N1A C6A doub Y N 11 0DA C6A N6A sing N N 12 0DA "C4'" "O4'" sing N N 13 0DA "C4'" "C3'" sing N N 14 0DA "O4'" "C1'" sing N N 15 0DA "C3'" "C2'" sing N N 16 0DA "C2'" "C1'" sing N N 17 0DA "C3'" "O3'" sing N N 18 0DA "C4'" "C5'" sing N N 19 0DA "C5'" "O5'" sing N N 20 0DA "O5'" P sing N N 21 0DA P OP2 sing N N 22 0DA P OP3 sing N N 23 0DA P OP1 doub N N 24 0DA C8A H8A sing N N 25 0DA C2A H2A sing N N 26 0DA N6A HN61 sing N N 27 0DA N6A HN62 sing N N 28 0DA "C4'" "H4'" sing N N 29 0DA "C3'" "H3'" sing N N 30 0DA "C2'" "H2'" sing N N 31 0DA "C2'" "H2''" sing N N 32 0DA "C1'" "H1'" sing N N 33 0DA "O3'" "HO3'" sing N N 34 0DA "C5'" "H5'" sing N N 35 0DA "C5'" "H5''" sing N N 36 0DA OP2 H2P sing N N 37 0DA OP3 HOP3 sing N N 38 0DC OP3 P sing N N 39 0DC OP3 HOP3 sing N N 40 0DC P OP1 doub N N 41 0DC P OP2 sing N N 42 0DC P "O5'" sing N N 43 0DC OP2 HOP2 sing N N 44 0DC "O5'" "C5'" sing N N 45 0DC "C5'" "C4'" sing N N 46 0DC "C5'" "H5'" sing N N 47 0DC "C5'" "H5''" sing N N 48 0DC "C4'" "O4'" sing N N 49 0DC "C4'" "C3'" sing N N 50 0DC "C4'" "H4'" sing N N 51 0DC "O4'" "C1'" sing N N 52 0DC "C3'" "O3'" sing N N 53 0DC "C3'" "C2'" sing N N 54 0DC "C3'" "H3'" sing N N 55 0DC "O3'" "HO3'" sing N N 56 0DC "C2'" "C1'" sing N N 57 0DC "C2'" "H2'" sing N N 58 0DC "C2'" "H2''" sing N N 59 0DC "C1'" N1 sing N N 60 0DC "C1'" "H1'" sing N N 61 0DC N1 C2 sing N N 62 0DC N1 C6 sing N N 63 0DC C2 O2 doub N N 64 0DC C2 N3 sing N N 65 0DC N3 C4 doub N N 66 0DC C4 N4 sing N N 67 0DC C4 C5 sing N N 68 0DC N4 H41 sing N N 69 0DC N4 H42 sing N N 70 0DC C5 C6 doub N N 71 0DC C5 H5 sing N N 72 0DC C6 H6 sing N N 73 0DG OP3 P sing N N 74 0DG OP3 HOP3 sing N N 75 0DG P OP1 doub N N 76 0DG P OP2 sing N N 77 0DG P "O5'" sing N N 78 0DG OP2 HOP2 sing N N 79 0DG "O5'" "C5'" sing N N 80 0DG "C5'" "C4'" sing N N 81 0DG "C5'" "H5'" sing N N 82 0DG "C5'" "H5''" sing N N 83 0DG "C4'" "O4'" sing N N 84 0DG "C4'" "C3'" sing N N 85 0DG "C4'" "H4'" sing N N 86 0DG "O4'" "C1'" sing N N 87 0DG "C3'" "O3'" sing N N 88 0DG "C3'" "C2'" sing N N 89 0DG "C3'" "H3'" sing N N 90 0DG "O3'" "HO3'" sing N N 91 0DG "C2'" "C1'" sing N N 92 0DG "C2'" "H2'" sing N N 93 0DG "C2'" "H2''" sing N N 94 0DG "C1'" N9 sing N N 95 0DG "C1'" "H1'" sing N N 96 0DG N9 C8 sing Y N 97 0DG N9 C4 sing Y N 98 0DG C8 N7 doub Y N 99 0DG C8 H8 sing N N 100 0DG N7 C5 sing Y N 101 0DG C5 C6 sing N N 102 0DG C5 C4 doub Y N 103 0DG C6 O6 doub N N 104 0DG C6 N1 sing N N 105 0DG N1 C2 sing N N 106 0DG N1 H1 sing N N 107 0DG C2 N2 sing N N 108 0DG C2 N3 doub N N 109 0DG N2 H21 sing N N 110 0DG N2 H22 sing N N 111 0DG N3 C4 sing N N 112 0DT OP3 P sing N N 113 0DT OP3 HOP3 sing N N 114 0DT P OP1 doub N N 115 0DT P OP2 sing N N 116 0DT P "O5'" sing N N 117 0DT OP2 HOP2 sing N N 118 0DT "O5'" "C5'" sing N N 119 0DT "C5'" "C4'" sing N N 120 0DT "C5'" "H5'" sing N N 121 0DT "C5'" "H5''" sing N N 122 0DT "C4'" "O4'" sing N N 123 0DT "C4'" "C3'" sing N N 124 0DT "C4'" "H4'" sing N N 125 0DT "O4'" "C1'" sing N N 126 0DT "C3'" "O3'" sing N N 127 0DT "C3'" "C2'" sing N N 128 0DT "C3'" "H3'" sing N N 129 0DT "O3'" "HO3'" sing N N 130 0DT "C2'" "C1'" sing N N 131 0DT "C2'" "H2'" sing N N 132 0DT "C2'" "H2''" sing N N 133 0DT "C1'" N1 sing N N 134 0DT "C1'" "H1'" sing N N 135 0DT N1 C2 sing N N 136 0DT N1 C6 sing N N 137 0DT C2 O2 doub N N 138 0DT C2 N3 sing N N 139 0DT N3 C4 sing N N 140 0DT N3 H3 sing N N 141 0DT C4 O4 doub N N 142 0DT C4 C5 sing N N 143 0DT C5 C5M sing N N 144 0DT C5 C6 doub N N 145 0DT C5M H71 sing N N 146 0DT C5M H72 sing N N 147 0DT C5M H73 sing N N 148 0DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 OFC "C5'" "C4'" sing N N 152 OFC "C5'" "O5'" sing N N 153 OFC "C4'" "O4'" sing N N 154 OFC "C4'" "C3'" sing N N 155 OFC "F2'" "C2'" sing N N 156 OFC "O4'" "C1'" sing N N 157 OFC OP2 P sing N N 158 OFC "O3'" "C3'" sing N N 159 OFC "C1'" "C2'" sing N N 160 OFC "C1'" N1 sing N N 161 OFC "O5'" P sing N N 162 OFC "C3'" "C2'" sing N N 163 OFC P OP1 doub N N 164 OFC N1 C6 sing N N 165 OFC N1 C2 sing N N 166 OFC O2 C2 doub N N 167 OFC C6 C5 doub N N 168 OFC C2 N3 sing N N 169 OFC C5 C4 sing N N 170 OFC N3 C4 doub N N 171 OFC C4 N4 sing N N 172 OFC N4 H41 sing N N 173 OFC N4 H42 sing N N 174 OFC C5 H5 sing N N 175 OFC C6 H6 sing N N 176 OFC "C1'" "H1'" sing N N 177 OFC "C2'" "H2'" sing N N 178 OFC "C3'" "H3'" sing N N 179 OFC "O3'" "HO3'" sing N N 180 OFC "C4'" "H4'" sing N N 181 OFC "C5'" "H5'" sing N N 182 OFC "C5'" "H5''" sing N N 183 OFC OP2 HOP2 sing N N 184 OFC P OP3 sing N N 185 OFC OP3 HOP3 sing N N 186 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7MOO 'double helix' 7MOO 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A 0DG 1 1_555 B 0DC 8 1_555 -0.384 -0.049 0.220 6.967 0.241 0.714 1 A_0DG1:0DC8_B A 1 ? B 8 ? 19 1 1 A 0DG 3 1_555 B 0DC 6 1_555 -0.230 -0.157 0.026 6.730 11.398 -2.481 2 A_0DG3:0DC6_B A 3 ? B 6 ? 19 1 1 A 0DC 6 1_555 B 0DG 3 1_555 -0.247 -0.128 -0.053 9.442 14.978 0.719 3 A_0DC6:0DG3_B A 6 ? B 3 ? 19 1 1 A 0DC 8 1_555 B 0DG 1 1_555 -0.262 -0.063 -0.091 9.735 5.420 0.181 4 A_0DC8:0DG1_B A 8 ? B 1 ? 19 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 0DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 6 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 B _ndb_struct_na_base_pair_step.j_label_comp_id_1 0DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 3 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 0DC _ndb_struct_na_base_pair_step.i_label_seq_id_2 8 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 B _ndb_struct_na_base_pair_step.j_label_comp_id_2 0DG _ndb_struct_na_base_pair_step.j_label_seq_id_2 1 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.441 _ndb_struct_na_base_pair_step.slide -3.073 _ndb_struct_na_base_pair_step.rise 6.449 _ndb_struct_na_base_pair_step.tilt 0.577 _ndb_struct_na_base_pair_step.roll -16.729 _ndb_struct_na_base_pair_step.twist -63.027 _ndb_struct_na_base_pair_step.x_displacement 4.169 _ndb_struct_na_base_pair_step.y_displacement -0.365 _ndb_struct_na_base_pair_step.helical_rise 5.569 _ndb_struct_na_base_pair_step.inclination 15.711 _ndb_struct_na_base_pair_step.tip 0.542 _ndb_struct_na_base_pair_step.helical_twist -64.990 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_0DC60DC8:0DG10DG3_BB _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 6 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 B _ndb_struct_na_base_pair_step.j_auth_seq_id_1 3 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 8 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 B _ndb_struct_na_base_pair_step.j_auth_seq_id_2 1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id OFC _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id OFC _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7KW4 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #