HEADER SIGNALING PROTEIN 04-MAY-21 7MP3 TITLE GRB7-SH2 DOMAIN IN COMPLEX WITH BICYCLIC PEPTIDE B8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 7; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: B47,EPIDERMAL GROWTH FACTOR RECEPTOR GRB-7,GRB7 ADAPTER COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BICYCLIC PEPTIDE B8; COMPND 10 CHAIN: L, N; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRB7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS GRB7, SH2, BICYCLIC-PEPTIDE, INHIBITOR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.COLSON,M.C.J.WILCE,J.A.WILCE REVDAT 4 17-APR-24 7MP3 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQRES LINK ATOM REVDAT 3 18-OCT-23 7MP3 1 REMARK REVDAT 2 08-JUN-22 7MP3 1 JRNL REVDAT 1 02-FEB-22 7MP3 0 JRNL AUTH N.P.STURRE,R.N.COLSON,N.SHAH,G.M.WATSON,X.YANG,M.C.J.WILCE, JRNL AUTH 2 J.T.PRICE,J.A.WILCE JRNL TITL ENHANCING THE BIOACTIVITY OF BICYCLIC PEPTIDES TARGETED TO JRNL TITL 2 GRB7-SH2 BY RESTORING CELL PERMEABILITY. JRNL REF BIOMEDICINES V. 10 2022 JRNL REFN ESSN 2227-9059 JRNL PMID 35625882 JRNL DOI 10.3390/BIOMEDICINES10051145 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 14036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.3300 - 4.3600 0.99 2711 124 0.2059 0.2356 REMARK 3 2 4.3600 - 3.4600 0.99 2653 150 0.1948 0.2273 REMARK 3 3 3.4600 - 3.0200 0.98 2680 128 0.2302 0.3082 REMARK 3 4 3.0200 - 2.7500 0.98 2694 111 0.2697 0.3632 REMARK 3 5 2.7500 - 2.5500 0.97 2645 140 0.2651 0.3165 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.382 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.466 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3281 REMARK 3 ANGLE : 0.497 4433 REMARK 3 CHIRALITY : 0.038 497 REMARK 3 PLANARITY : 0.004 569 REMARK 3 DIHEDRAL : 15.568 449 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 425 THROUGH 528) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7407 -0.2548 -0.7072 REMARK 3 T TENSOR REMARK 3 T11: 0.3351 T22: 0.1702 REMARK 3 T33: 0.1988 T12: 0.0232 REMARK 3 T13: 0.0248 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.8769 L22: 4.8512 REMARK 3 L33: 4.7143 L12: -0.7259 REMARK 3 L13: 0.3847 L23: 0.0922 REMARK 3 S TENSOR REMARK 3 S11: 0.1221 S12: 0.1103 S13: -0.1526 REMARK 3 S21: -0.1284 S22: -0.1539 S23: 0.1537 REMARK 3 S31: 0.1578 S32: 0.1312 S33: 0.0266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 429 THROUGH 528) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9531 3.2270 -27.8895 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.1648 REMARK 3 T33: 0.2189 T12: 0.0077 REMARK 3 T13: -0.0065 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 4.7410 L22: 3.6039 REMARK 3 L33: 5.6991 L12: -1.0261 REMARK 3 L13: 1.2881 L23: 0.2399 REMARK 3 S TENSOR REMARK 3 S11: 0.1080 S12: 0.2962 S13: -0.0990 REMARK 3 S21: -0.1775 S22: -0.0438 S23: 0.1900 REMARK 3 S31: -0.2033 S32: -0.0450 S33: -0.0606 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 425 THROUGH 528) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5683 17.4034 22.4426 REMARK 3 T TENSOR REMARK 3 T11: 0.2966 T22: 0.1920 REMARK 3 T33: 0.2043 T12: 0.0491 REMARK 3 T13: -0.0032 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.7447 L22: 5.1473 REMARK 3 L33: 4.5810 L12: 0.0661 REMARK 3 L13: -0.5398 L23: 0.3500 REMARK 3 S TENSOR REMARK 3 S11: 0.1374 S12: 0.0069 S13: 0.1113 REMARK 3 S21: 0.1107 S22: -0.0848 S23: -0.0773 REMARK 3 S31: -0.2381 S32: 0.0850 S33: -0.0239 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 428 THROUGH 527) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8098 10.8885 44.2597 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.1775 REMARK 3 T33: 0.2453 T12: 0.0161 REMARK 3 T13: 0.0060 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.4670 L22: 3.9105 REMARK 3 L33: 6.1166 L12: -0.8374 REMARK 3 L13: -0.3041 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: 0.1813 S12: -0.1547 S13: -0.0317 REMARK 3 S21: 0.0465 S22: -0.1339 S23: 0.0170 REMARK 3 S31: 0.0823 S32: -0.2000 S33: -0.0192 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'L' AND RESID 1 THROUGH 10) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6744 12.3187 3.1957 REMARK 3 T TENSOR REMARK 3 T11: 0.5557 T22: 0.2543 REMARK 3 T33: 0.2848 T12: 0.0192 REMARK 3 T13: 0.1028 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 8.4007 L22: 6.4995 REMARK 3 L33: 2.6649 L12: -4.1714 REMARK 3 L13: 4.4494 L23: -3.2894 REMARK 3 S TENSOR REMARK 3 S11: -0.1831 S12: -0.1641 S13: 0.9085 REMARK 3 S21: 0.0802 S22: -0.0973 S23: -0.4175 REMARK 3 S31: 0.0067 S32: -0.2618 S33: 0.2954 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'N' AND RESID 1 THROUGH 10) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7508 5.0972 18.6949 REMARK 3 T TENSOR REMARK 3 T11: 0.3326 T22: 0.2558 REMARK 3 T33: 0.3035 T12: -0.0089 REMARK 3 T13: -0.0663 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.1770 L22: 0.3854 REMARK 3 L33: 8.1110 L12: 0.2603 REMARK 3 L13: -0.9672 L23: -1.4610 REMARK 3 S TENSOR REMARK 3 S11: -0.3628 S12: -0.0804 S13: -0.0451 REMARK 3 S21: -0.4370 S22: 0.1933 S23: -0.2533 REMARK 3 S31: 0.3377 S32: -0.4697 S33: 0.1626 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and ((resid 425 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 426 through 441 or (resid 442 REMARK 3 through 443 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 444 through 446 or (resid 447 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 448 through 449 or (resid 450 REMARK 3 through 451 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 452 through 458 or (resid 459 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 460 through 474 or (resid 475 REMARK 3 through 476 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 477 through 528)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 425 through 429 or REMARK 3 (resid 430 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 431 REMARK 3 through 438 or (resid 439 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 440 through 444 or (resid 445 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 446 through 486 REMARK 3 or (resid 487 through 488 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 489 through 528)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 429 through 430 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 431 through 442 REMARK 3 or (resid 443 through 445 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 446 through 451 or (resid 452 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 453 through 458 REMARK 3 or (resid 459 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 460 through 464 or (resid 465 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 466 through 473 or (resid 474 REMARK 3 through 476 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 477 or (resid 478 and (name N or name CA REMARK 3 or name C or name O or name CB )) or REMARK 3 resid 479 through 486 or (resid 487 REMARK 3 through 488 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 489 through 498 or (resid 499 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 500 through 515 or (resid 516 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 517 through 523 REMARK 3 or (resid 524 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 525 through 527)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 429 through 460 or REMARK 3 resid 464 through 527)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "L" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "N" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000255440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 2021 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14036 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 52.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 13.07.2020 REMARK 200 STARTING MODEL: 5EEQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M BIS TRIS PH 6.6, 16% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 413 REMARK 465 SER A 414 REMARK 465 PRO A 415 REMARK 465 ALA A 416 REMARK 465 SER A 417 REMARK 465 GLY A 418 REMARK 465 THR A 419 REMARK 465 SER A 420 REMARK 465 LEU A 421 REMARK 465 SER A 422 REMARK 465 ALA A 423 REMARK 465 ALA A 424 REMARK 465 ASN A 463 REMARK 465 PRO A 464 REMARK 465 ARG A 529 REMARK 465 VAL A 530 REMARK 465 ALA A 531 REMARK 465 LEU A 532 REMARK 465 GLY B 413 REMARK 465 SER B 414 REMARK 465 PRO B 415 REMARK 465 ALA B 416 REMARK 465 SER B 417 REMARK 465 GLY B 418 REMARK 465 THR B 419 REMARK 465 SER B 420 REMARK 465 LEU B 421 REMARK 465 SER B 422 REMARK 465 ALA B 423 REMARK 465 ALA B 424 REMARK 465 ILE B 425 REMARK 465 HIS B 426 REMARK 465 ARG B 427 REMARK 465 THR B 428 REMARK 465 GLN B 461 REMARK 465 ARG B 462 REMARK 465 ASN B 463 REMARK 465 ARG B 529 REMARK 465 VAL B 530 REMARK 465 ALA B 531 REMARK 465 LEU B 532 REMARK 465 GLY C 413 REMARK 465 SER C 414 REMARK 465 PRO C 415 REMARK 465 ALA C 416 REMARK 465 SER C 417 REMARK 465 GLY C 418 REMARK 465 THR C 419 REMARK 465 SER C 420 REMARK 465 LEU C 421 REMARK 465 SER C 422 REMARK 465 ALA C 423 REMARK 465 ALA C 424 REMARK 465 ASN C 463 REMARK 465 PRO C 464 REMARK 465 ARG C 529 REMARK 465 VAL C 530 REMARK 465 ALA C 531 REMARK 465 LEU C 532 REMARK 465 GLY D 413 REMARK 465 SER D 414 REMARK 465 PRO D 415 REMARK 465 ALA D 416 REMARK 465 SER D 417 REMARK 465 GLY D 418 REMARK 465 THR D 419 REMARK 465 SER D 420 REMARK 465 LEU D 421 REMARK 465 SER D 422 REMARK 465 ALA D 423 REMARK 465 ALA D 424 REMARK 465 ILE D 425 REMARK 465 HIS D 426 REMARK 465 ARG D 427 REMARK 465 GLN D 461 REMARK 465 THR D 528 REMARK 465 ARG D 529 REMARK 465 VAL D 530 REMARK 465 ALA D 531 REMARK 465 LEU D 532 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 427 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 430 CG CD1 CD2 REMARK 470 ARG A 435 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 439 CG CD OE1 OE2 REMARK 470 ARG A 443 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 445 CG1 CG2 CD1 REMARK 470 VAL A 451 CG1 CG2 REMARK 470 GLN A 465 CG CD OE1 NE2 REMARK 470 LYS A 476 CG CD CE NZ REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 GLU A 487 CG CD OE1 OE2 REMARK 470 GLU A 488 CG CD OE1 OE2 REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 524 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 435 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 439 CG CD OE1 OE2 REMARK 470 GLU B 440 CG CD OE1 OE2 REMARK 470 GLN B 447 CG CD OE1 NE2 REMARK 470 VAL B 451 CG1 CG2 REMARK 470 LYS B 476 CG CD CE NZ REMARK 470 GLU B 486 CG CD OE1 OE2 REMARK 470 GLU B 488 CG CD OE1 OE2 REMARK 470 ARG B 490 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 491 CG CD1 CD2 REMARK 470 ILE C 425 CG1 CG2 CD1 REMARK 470 ARG C 427 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 435 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 442 CG CD OE1 NE2 REMARK 470 ARG C 443 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 447 CG CD OE1 NE2 REMARK 470 LEU C 450 CG CD1 CD2 REMARK 470 VAL C 451 CG1 CG2 REMARK 470 GLU C 459 CG CD OE1 OE2 REMARK 470 GLN C 465 CG CD OE1 NE2 REMARK 470 GLN C 475 CG CD OE1 NE2 REMARK 470 LYS C 476 CG CD CE NZ REMARK 470 GLU C 486 CG CD OE1 OE2 REMARK 470 GLU C 488 CG CD OE1 OE2 REMARK 470 ARG C 490 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 524 CG CD NE CZ NH1 NH2 REMARK 470 THR D 428 OG1 CG2 REMARK 470 GLN D 429 CG CD OE1 NE2 REMARK 470 LEU D 430 CG CD1 CD2 REMARK 470 ARG D 435 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 439 CG CD OE1 OE2 REMARK 470 GLU D 440 CG CD OE1 OE2 REMARK 470 ARG D 443 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 444 CG CD1 CD2 REMARK 470 ILE D 445 CG1 CG2 CD1 REMARK 470 GLN D 447 CG CD OE1 NE2 REMARK 470 VAL D 451 CG1 CG2 REMARK 470 ASP D 452 CG OD1 OD2 REMARK 470 GLU D 459 CG CD OE1 OE2 REMARK 470 ARG D 462 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 463 CG OD1 ND2 REMARK 470 GLN D 465 CG CD OE1 NE2 REMARK 470 LEU D 474 CG CD1 CD2 REMARK 470 GLN D 475 CG CD OE1 NE2 REMARK 470 LYS D 476 CG CD CE NZ REMARK 470 LYS D 478 CG CD CE NZ REMARK 470 GLU D 486 CG CD OE1 OE2 REMARK 470 GLU D 487 CG CD OE1 OE2 REMARK 470 GLU D 488 CG CD OE1 OE2 REMARK 470 ARG D 490 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 491 CG CD1 CD2 REMARK 470 GLN D 499 CG CD OE1 NE2 REMARK 470 ARG D 516 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 524 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 8 OE1 REMARK 470 GLU N 8 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS L 1 CD GLU L 8 1.44 REMARK 500 NZ LYS N 1 CD GLU N 8 1.45 REMARK 500 N LYS N 1 C08 48V N 11 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 487 -104.25 -114.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 7MP3 A 415 532 UNP Q14451 GRB7_HUMAN 415 532 DBREF 7MP3 B 415 532 UNP Q14451 GRB7_HUMAN 415 532 DBREF 7MP3 C 415 532 UNP Q14451 GRB7_HUMAN 415 532 DBREF 7MP3 D 415 532 UNP Q14451 GRB7_HUMAN 415 532 DBREF 7MP3 L 1 10 PDB 7MP3 7MP3 1 10 DBREF 7MP3 N 1 10 PDB 7MP3 7MP3 1 10 SEQADV 7MP3 GLY A 413 UNP Q14451 EXPRESSION TAG SEQADV 7MP3 SER A 414 UNP Q14451 EXPRESSION TAG SEQADV 7MP3 GLY B 413 UNP Q14451 EXPRESSION TAG SEQADV 7MP3 SER B 414 UNP Q14451 EXPRESSION TAG SEQADV 7MP3 GLY C 413 UNP Q14451 EXPRESSION TAG SEQADV 7MP3 SER C 414 UNP Q14451 EXPRESSION TAG SEQADV 7MP3 GLY D 413 UNP Q14451 EXPRESSION TAG SEQADV 7MP3 SER D 414 UNP Q14451 EXPRESSION TAG SEQRES 1 A 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 A 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 A 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 A 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 A 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 A 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 A 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 A 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 A 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 A 120 VAL ALA LEU SEQRES 1 B 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 B 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 B 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 B 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 B 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 B 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 B 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 B 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 B 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 B 120 VAL ALA LEU SEQRES 1 C 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 C 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 C 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 C 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 C 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 C 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 C 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 C 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 C 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 C 120 VAL ALA LEU SEQRES 1 D 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 D 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 D 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 D 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 D 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 D 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 D 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 D 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 D 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 D 120 VAL ALA LEU SEQRES 1 L 11 LYS PHE GLU GLY TYR ASP ASN GLU PHE PRO 48V SEQRES 1 N 11 LYS PHE GLU GLY TYR ASP ASN GLU PHE PRO 48V HET 48V L 11 10 HET 48V N 11 10 HETNAM 48V {[(2R)-2,3-DIAMINO-3-OXOPROPYL]SULFANYL}ACETIC ACID FORMUL 5 48V 2(C5 H10 N2 O3 S) FORMUL 7 HOH *52(H2 O) HELIX 1 AA1 ILE A 425 GLN A 429 5 5 HELIX 2 AA2 SER A 437 GLN A 448 1 12 HELIX 3 AA3 ASP A 504 HIS A 512 1 9 HELIX 4 AA4 SER B 437 GLN B 448 1 12 HELIX 5 AA5 ASP B 504 HIS B 512 1 9 HELIX 6 AA6 ILE C 425 GLN C 429 5 5 HELIX 7 AA7 SER C 437 GLN C 448 1 12 HELIX 8 AA8 ASP C 504 HIS C 512 1 9 HELIX 9 AA9 SER D 437 GLN D 448 1 12 HELIX 10 AB1 ASP D 504 HIS D 512 1 9 SHEET 1 AA1 5 ARG A 490 SER A 494 0 SHEET 2 AA1 5 LYS A 476 GLU A 487 -1 N GLU A 487 O ARG A 490 SHEET 3 AA1 5 PHE A 467 HIS A 473 -1 N PHE A 467 O ILE A 482 SHEET 4 AA1 5 LEU A 454 GLU A 459 -1 N ARG A 458 O VAL A 468 SHEET 5 AA1 5 HIS A 525 CYS A 526 1 O HIS A 525 N PHE A 455 SHEET 1 AA2 5 ARG B 490 SER B 494 0 SHEET 2 AA2 5 LYS B 476 GLU B 487 -1 N SER B 485 O TYR B 492 SHEET 3 AA2 5 PHE B 467 HIS B 473 -1 N PHE B 467 O ILE B 482 SHEET 4 AA2 5 LEU B 454 GLU B 459 -1 N ARG B 458 O VAL B 468 SHEET 5 AA2 5 HIS B 525 CYS B 526 1 O HIS B 525 N PHE B 455 SHEET 1 AA3 6 ARG C 501 PHE C 502 0 SHEET 2 AA3 6 LEU C 491 SER C 494 -1 N PHE C 493 O PHE C 502 SHEET 3 AA3 6 LYS C 476 GLU C 486 -1 N SER C 485 O TYR C 492 SHEET 4 AA3 6 PHE C 467 HIS C 473 -1 N PHE C 467 O ILE C 482 SHEET 5 AA3 6 LEU C 454 GLU C 459 -1 N ARG C 458 O VAL C 468 SHEET 6 AA3 6 HIS C 525 CYS C 526 1 O HIS C 525 N PHE C 455 SHEET 1 AA4 5 ARG D 490 SER D 494 0 SHEET 2 AA4 5 LYS D 476 GLU D 487 -1 N SER D 485 O TYR D 492 SHEET 3 AA4 5 PHE D 467 HIS D 473 -1 N PHE D 467 O ILE D 482 SHEET 4 AA4 5 LEU D 454 GLU D 459 -1 N ARG D 458 O VAL D 468 SHEET 5 AA4 5 HIS D 525 CYS D 526 1 O HIS D 525 N PHE D 455 LINK N LYS L 1 C09 48V L 11 1555 1555 1.32 LINK C PRO L 10 N01 48V L 11 1555 1555 1.46 LINK N LYS N 1 C09 48V N 11 1555 1555 1.36 LINK C PRO N 10 N01 48V N 11 1555 1555 1.47 CRYST1 42.156 53.122 54.809 103.98 102.00 100.05 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023721 0.004203 0.006531 0.00000 SCALE2 0.000000 0.019118 0.005761 0.00000 SCALE3 0.000000 0.000000 0.019481 0.00000 MTRIX1 1 -0.964493 0.262238 0.031372 -5.24390 1 MTRIX2 1 0.263708 0.949680 0.169018 3.30624 1 MTRIX3 1 0.014529 0.171289 -0.985114 -28.80417 1 MTRIX1 2 0.803347 0.314163 0.505901 -9.37063 1 MTRIX2 2 0.313868 -0.945320 0.088634 17.52008 1 MTRIX3 2 0.506084 0.087583 -0.858026 22.19503 1 MTRIX1 3 -0.678190 0.606018 -0.415693 -26.84046 1 MTRIX2 3 -0.564389 -0.791789 -0.233526 10.28213 1 MTRIX3 3 -0.470662 0.076238 0.879014 44.72726 1 MTRIX1 4 0.800442 0.325040 0.503628 -9.39270 1 MTRIX2 4 0.323037 -0.941673 0.094333 17.58681 1 MTRIX3 4 0.504915 0.087182 -0.858755 22.20741 1