HEADER SIGNALING PROTEIN 04-MAY-21 7MP9 TITLE CRYSTAL STRUCTURE OF THE CYTOSOLIC DOMAIN OF TRIBOLIUM CASTANEUM PINK1 TITLE 2 PHOSPHORYLATED AT SER205 IN COMPLEX WITH ADP ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PINK1, MITOCHONDRIAL-LIKE COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRIBOLIUM CASTANEUM; SOURCE 3 ORGANISM_COMMON: RED FLOUR BEETLE; SOURCE 4 ORGANISM_TAXID: 7070; SOURCE 5 GENE: TCASGA2_TC013202; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS KINASE, TRANSPHORYLATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.RASOOL,S.VEYRON,J.F.TREMPE REVDAT 5 09-OCT-24 7MP9 1 REMARK REVDAT 4 18-OCT-23 7MP9 1 REMARK REVDAT 3 19-JAN-22 7MP9 1 JRNL REVDAT 2 22-DEC-21 7MP9 1 JRNL REVDAT 1 01-DEC-21 7MP9 0 JRNL AUTH S.RASOOL,S.VEYRON,N.SOYA,M.A.ELDEEB,G.L.LUKACS,E.A.FON, JRNL AUTH 2 J.F.TREMPE JRNL TITL MECHANISM OF PINK1 ACTIVATION BY AUTOPHOSPHORYLATION AND JRNL TITL 2 INSIGHTS INTO ASSEMBLY ON THE TOM COMPLEX. JRNL REF MOL.CELL V. 82 44 2022 JRNL REFN ISSN 1097-2765 JRNL PMID 34875213 JRNL DOI 10.1016/J.MOLCEL.2021.11.012 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.7 REMARK 3 NUMBER OF REFLECTIONS : 9565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6700 - 4.0300 1.00 4215 211 0.2324 0.2727 REMARK 3 2 4.0300 - 3.2000 0.88 3430 169 0.2473 0.3348 REMARK 3 3 3.2000 - 2.8000 0.39 1476 64 0.3242 0.4170 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.205 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.718 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3337 REMARK 3 ANGLE : 0.548 4543 REMARK 3 CHIRALITY : 0.039 515 REMARK 3 PLANARITY : 0.005 572 REMARK 3 DIHEDRAL : 21.235 484 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9783 3.6761 -19.6339 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.0603 REMARK 3 T33: 0.0979 T12: 0.0410 REMARK 3 T13: 0.0656 T23: -0.0420 REMARK 3 L TENSOR REMARK 3 L11: 3.7338 L22: 1.6571 REMARK 3 L33: 2.7380 L12: -0.6364 REMARK 3 L13: 2.1178 L23: -0.9497 REMARK 3 S TENSOR REMARK 3 S11: 0.2189 S12: -0.0548 S13: -0.1948 REMARK 3 S21: -0.2006 S22: -0.0522 S23: 0.2576 REMARK 3 S31: 0.2402 S32: -0.1603 S33: -0.1201 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7575 3.4212 -37.5715 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.0949 REMARK 3 T33: 0.1778 T12: 0.0316 REMARK 3 T13: -0.0278 T23: -0.1064 REMARK 3 L TENSOR REMARK 3 L11: 4.0501 L22: 0.2174 REMARK 3 L33: 2.2048 L12: -0.3613 REMARK 3 L13: -0.4491 L23: -0.5857 REMARK 3 S TENSOR REMARK 3 S11: 0.0379 S12: 0.6957 S13: -0.7974 REMARK 3 S21: -0.1366 S22: 0.0146 S23: 0.0979 REMARK 3 S31: 0.5044 S32: -0.2301 S33: 0.2036 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7958 18.0190 -27.9734 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: -0.0358 REMARK 3 T33: -0.0700 T12: 0.0860 REMARK 3 T13: 0.0171 T23: 0.1135 REMARK 3 L TENSOR REMARK 3 L11: 1.0110 L22: 1.1891 REMARK 3 L33: 1.0148 L12: 0.2273 REMARK 3 L13: 0.3649 L23: -0.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.1525 S13: 0.1416 REMARK 3 S21: -0.0470 S22: -0.0708 S23: 0.0824 REMARK 3 S31: -0.3045 S32: -0.0236 S33: 0.0222 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 443 THROUGH 568 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7230 15.5648 -8.7564 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.0884 REMARK 3 T33: 0.0290 T12: 0.0719 REMARK 3 T13: 0.0106 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.2518 L22: 1.7242 REMARK 3 L33: 1.6865 L12: -0.3369 REMARK 3 L13: 0.2866 L23: -0.2226 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.2512 S13: -0.0401 REMARK 3 S21: 0.3410 S22: -0.0320 S23: -0.1637 REMARK 3 S31: -0.1329 S32: 0.1196 S33: 0.0097 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000252516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 34.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5YJ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM MES (PH 6.5), 0.16M (NH4)2 SO4, REMARK 280 16% PEG 8K., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 182.64800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 365.29600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 273.97200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 456.62000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.32400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 182.64800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 365.29600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 456.62000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 273.97200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 91.32400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -91.32400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 746 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 116 REMARK 465 PRO A 117 REMARK 465 LEU A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 ASP A 184 REMARK 465 GLU A 185 REMARK 465 THR A 186 REMARK 465 ALA A 225 REMARK 465 SER A 226 REMARK 465 ASN A 227 REMARK 465 HIS A 228 REMARK 465 ILE A 261 REMARK 465 GLN A 262 REMARK 465 GLU A 263 REMARK 465 LEU A 264 REMARK 465 GLU A 265 REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 LYS A 268 REMARK 465 ASP A 269 REMARK 465 LEU A 270 REMARK 465 TYR A 271 REMARK 465 PRO A 272 REMARK 465 ALA A 273 REMARK 465 ALA A 274 REMARK 465 LEU A 275 REMARK 465 PRO A 276 REMARK 465 PRO A 277 REMARK 465 ARG A 278 REMARK 465 LEU A 279 REMARK 465 HIS A 280 REMARK 465 PRO A 281 REMARK 465 GLU A 282 REMARK 465 GLY A 283 REMARK 465 SER A 432 REMARK 465 PRO A 493 REMARK 465 GLY A 494 REMARK 465 LEU A 495 REMARK 465 LEU A 569 REMARK 465 ASP A 570 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 LEU A 237 CG CD1 CD2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 SER A 289 OG REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 PHE A 437 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 LYS A 528 CG CD CE NZ REMARK 470 ARG A 531 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 568 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 189 -6.53 69.03 REMARK 500 ASP A 202 0.41 -66.31 REMARK 500 ASN A 232 39.99 -84.21 REMARK 500 ASN A 287 43.40 -95.25 REMARK 500 ASP A 337 39.27 -151.47 REMARK 500 THR A 347 40.29 -96.98 REMARK 500 SER A 358 -68.60 -107.50 REMARK 500 TYR A 375 61.99 -105.01 REMARK 500 GLU A 379 6.22 -68.12 REMARK 500 ALA A 401 -0.98 68.90 REMARK 500 PHE A 422 33.08 -92.39 REMARK 500 PHE A 529 -59.21 -121.55 REMARK 500 PRO A 567 -164.37 -79.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 757 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 758 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 759 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 760 DISTANCE = 7.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP A 205 O1P REMARK 620 2 AN2 A 609 O1A 9.2 REMARK 620 N 1 DBREF 7MP9 A 121 570 UNP D6WMX4 D6WMX4_TRICA 121 570 SEQADV 7MP9 GLY A 116 UNP D6WMX4 EXPRESSION TAG SEQADV 7MP9 PRO A 117 UNP D6WMX4 EXPRESSION TAG SEQADV 7MP9 LEU A 118 UNP D6WMX4 EXPRESSION TAG SEQADV 7MP9 GLY A 119 UNP D6WMX4 EXPRESSION TAG SEQADV 7MP9 SER A 120 UNP D6WMX4 EXPRESSION TAG SEQADV 7MP9 ALA A 131 UNP D6WMX4 TRP 131 CONFLICT SEQADV 7MP9 ALA A 142 UNP D6WMX4 TRP 142 CONFLICT SEQADV 7MP9 ALA A 225 UNP D6WMX4 TYR 225 CONFLICT SEQADV 7MP9 ALA A 378 UNP D6WMX4 TYR 378 CONFLICT SEQADV 7MP9 ALA A 401 UNP D6WMX4 PHE 401 CONFLICT SEQRES 1 A 455 GLY PRO LEU GLY SER THR LYS GLU GLU GLU LEU GLU GLY SEQRES 2 A 455 VAL CYS ALA GLU ILE ARG GLU ALA ILE SER LYS ILE LYS SEQRES 3 A 455 ALA GLN TYR TYR ASP ILE ASP GLU SER ARG PHE GLU SER SEQRES 4 A 455 ASN PRO ILE THR LEU ASN ASP LEU SER LEU GLY LYS PRO SEQRES 5 A 455 ILE ALA LYS GLY THR ASN GLY VAL VAL TYR SER ALA LYS SEQRES 6 A 455 VAL LYS ASP ASP GLU THR ASP ASP ASN LYS TYR PRO PHE SEQRES 7 A 455 ALA LEU LYS MET MET PHE ASN TYR ASP ILE GLN SEP ASN SEQRES 8 A 455 SER MET GLU ILE LEU LYS ALA MET TYR ARG GLU THR VAL SEQRES 9 A 455 PRO ALA ARG MET TYR ALA SER ASN HIS ASP LEU ASN ASN SEQRES 10 A 455 TRP GLU ILE GLU LEU ALA ASN ARG ARG LYS HIS LEU PRO SEQRES 11 A 455 PRO HIS PRO ASN ILE VAL ALA ILE PHE SER VAL PHE THR SEQRES 12 A 455 ASP LEU ILE GLN GLU LEU GLU GLY SER LYS ASP LEU TYR SEQRES 13 A 455 PRO ALA ALA LEU PRO PRO ARG LEU HIS PRO GLU GLY GLU SEQRES 14 A 455 GLY ARG ASN MET SER LEU PHE LEU LEU MET LYS ARG TYR SEQRES 15 A 455 ASP CYS ASN LEU GLN SER PHE LEU SER THR ALA PRO SER SEQRES 16 A 455 THR ARG THR SER LEU LEU LEU LEU ALA GLN LEU LEU GLU SEQRES 17 A 455 GLY VAL ALA HIS MET THR ALA HIS GLY ILE ALA HIS ARG SEQRES 18 A 455 ASP LEU LYS SER ASP ASN LEU LEU LEU ASP THR SER GLU SEQRES 19 A 455 PRO GLU SER PRO ILE LEU VAL ILE SER ASP PHE GLY CYS SEQRES 20 A 455 CYS LEU ALA ASP LYS THR ASN GLY LEU SER LEU PRO TYR SEQRES 21 A 455 THR SER ALA GLU MET ASP LYS GLY GLY ASN THR ALA LEU SEQRES 22 A 455 MET ALA PRO GLU ILE ILE CYS GLN LYS PRO GLY THR ALA SEQRES 23 A 455 SER VAL LEU ASN TYR SER LYS ALA ASP LEU TRP ALA VAL SEQRES 24 A 455 GLY ALA ILE ALA TYR GLU ILE PHE ASN CYS HIS ASN PRO SEQRES 25 A 455 PHE TYR GLY PRO SER ARG LEU LYS ASN PHE ASN TYR LYS SEQRES 26 A 455 GLU GLY ASP LEU PRO LYS LEU PRO ASP GLU VAL PRO THR SEQRES 27 A 455 VAL ILE GLN ALA LEU VAL ALA ASN LEU LEU LYS ARG ASN SEQRES 28 A 455 PRO ASN LYS ARG LEU ASP PRO GLU VAL ALA ALA ASN VAL SEQRES 29 A 455 CYS GLN LEU PHE LEU TRP ALA PRO SER THR TRP LEU LYS SEQRES 30 A 455 PRO GLY LEU LYS VAL PRO THR SER GLY GLU ILE LEU GLN SEQRES 31 A 455 TRP LEU LEU SER LEU THR THR LYS VAL LEU CYS GLU GLY SEQRES 32 A 455 LYS ILE ASN ASN LYS SER PHE GLY GLU LYS PHE TPO ARG SEQRES 33 A 455 ASN TRP ARG ARG THR TYR PRO GLU TYR LEU LEU ILE SER SEQRES 34 A 455 SER PHE LEU CYS ARG ALA LYS LEU ALA ASN VAL ARG ASN SEQRES 35 A 455 ALA LEU HIS TRP ILE GLN GLU ASN LEU PRO GLU LEU ASP MODRES 7MP9 SEP A 205 SER MODIFIED RESIDUE MODRES 7MP9 TPO A 530 THR MODIFIED RESIDUE HET SEP A 205 10 HET TPO A 530 11 HET MG A 601 1 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET PG4 A 606 13 HET PG4 A 607 13 HET PG4 A 608 13 HET AN2 A 609 27 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM AN2 AMP PHOSPHORAMIDATE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 MG MG 2+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 PG4 3(C8 H18 O5) FORMUL 10 AN2 C10 H16 N6 O9 P2 FORMUL 11 HOH *60(H2 O) HELIX 1 AA1 THR A 121 ASN A 155 1 35 HELIX 2 AA2 THR A 158 ASN A 160 5 3 HELIX 3 AA3 ASN A 206 THR A 218 1 13 HELIX 4 AA4 ASN A 232 ASN A 239 1 8 HELIX 5 AA5 LEU A 301 LEU A 305 1 5 HELIX 6 AA6 SER A 310 HIS A 331 1 22 HELIX 7 AA7 LYS A 339 ASP A 341 5 3 HELIX 8 AA8 ALA A 390 CYS A 395 1 6 HELIX 9 AA9 LYS A 408 PHE A 422 1 15 HELIX 10 AB1 PRO A 452 LEU A 463 1 12 HELIX 11 AB2 ASN A 466 ARG A 470 5 5 HELIX 12 AB3 ASP A 472 ALA A 486 1 15 HELIX 13 AB4 PRO A 487 LYS A 492 5 6 HELIX 14 AB5 THR A 499 GLU A 517 1 19 HELIX 15 AB6 ASN A 522 GLY A 526 5 5 HELIX 16 AB7 ASN A 532 ARG A 535 5 4 HELIX 17 AB8 THR A 536 CYS A 548 1 13 HELIX 18 AB9 LYS A 551 ASN A 565 1 15 SHEET 1 AA1 5 LEU A 162 LYS A 170 0 SHEET 2 AA1 5 VAL A 175 VAL A 181 -1 O SER A 178 N GLY A 165 SHEET 3 AA1 5 PHE A 193 PHE A 199 -1 O LEU A 195 N TYR A 177 SHEET 4 AA1 5 SER A 289 LYS A 295 -1 O MET A 294 N ALA A 194 SHEET 5 AA1 5 ILE A 253 ASP A 259 -1 N ASP A 259 O SER A 289 SHEET 1 AA2 3 CYS A 299 ASN A 300 0 SHEET 2 AA2 3 LEU A 343 ASP A 346 -1 O LEU A 345 N CYS A 299 SHEET 3 AA2 3 ILE A 354 ILE A 357 -1 O VAL A 356 N LEU A 344 SHEET 1 AA3 2 SER A 372 PRO A 374 0 SHEET 2 AA3 2 VAL A 403 ASN A 405 -1 O LEU A 404 N LEU A 373 LINK C GLN A 204 N SEP A 205 1555 1555 1.33 LINK C SEP A 205 N ASN A 206 1555 1555 1.33 LINK C PHE A 529 N TPO A 530 1555 1555 1.33 LINK C TPO A 530 N ARG A 531 1555 1555 1.33 LINK O1P SEP A 205 MG MG A 601 1555 10554 2.15 LINK MG MG A 601 O1A AN2 A 609 1555 1555 2.10 CRYST1 52.736 52.736 547.944 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018962 0.010948 0.000000 0.00000 SCALE2 0.000000 0.021896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001825 0.00000