HEADER TRANSFERASE 04-MAY-21 7MPK TITLE CRYSTAL STRUCTURE OF TAGA WITH UDP-GLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINYLDIPHOSPHOUNDECAPRENOL N-ACETYL-BETA-D- COMPND 3 MANNOSAMINYLTRANSFERASE; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: N-ACETYLMANNOSAMINYLTRANSFERASE,UDP-N-ACETYLMANNOSAMINE COMPND 6 TRANSFERASE,UDP-N-ACETYLMANNOSAMINE:N-ACETYLGLUCOSAMINYL COMPND 7 PYROPHOSPHORYLUNDECAPRENOL N-ACETYLMANNOSAMINYLTRANSFERASE; COMPND 8 EC: 2.4.1.187; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER ITALICUS (STRAIN DSM 9252 / SOURCE 3 AB9); SOURCE 4 ORGANISM_TAXID: 580331; SOURCE 5 STRAIN: DSM 9252 / AB9; SOURCE 6 GENE: THIT_1850; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAPLE4 KEYWDS GLYCOSYLTRANSFERASE, WALL TEICHOIC ACID ENZYME, BETA-N-2 KEYWDS 2 ACETYLMANNOSAMINYLTRANSFERASE, TRANSFERASE, UDP-N-ACETYLGLUCOSAMINE EXPDTA X-RAY DIFFRACTION AUTHOR O.E.MARTINEZ,D.CASCIO,R.T.CLUBB REVDAT 3 18-OCT-23 7MPK 1 REMARK REVDAT 2 02-FEB-22 7MPK 1 JRNL REVDAT 1 29-DEC-21 7MPK 0 JRNL AUTH O.E.MARTINEZ,B.J.MAHONEY,A.K.GORING,S.W.YI,D.P.TRAN, JRNL AUTH 2 D.CASCIO,M.L.PHILLIPS,M.M.MUTHANA,X.CHEN,M.E.JUNG,J.A.LOO, JRNL AUTH 3 R.T.CLUBB JRNL TITL INSIGHT INTO THE MOLECULAR BASIS OF SUBSTRATE RECOGNITION BY JRNL TITL 2 THE WALL TEICHOIC ACID GLYCOSYLTRANSFERASE TAGA. JRNL REF J.BIOL.CHEM. V. 298 01464 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34864059 JRNL DOI 10.1016/J.JBC.2021.101464 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1748 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.31 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 315 REMARK 3 BIN R VALUE (WORKING SET) : 0.2984 REMARK 3 BIN FREE R VALUE : 0.5210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 35 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01030 REMARK 3 B22 (A**2) : -0.01030 REMARK 3 B33 (A**2) : 0.02050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.393 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4840 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6581 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1744 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 797 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4840 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 628 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 3 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : 19 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3636 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.94 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 17.0345 -34.2857 -2.1779 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: -0.1059 REMARK 3 T33: -0.1276 T12: -0.1024 REMARK 3 T13: 0.0177 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.7023 L22: 2.5468 REMARK 3 L33: 1.1834 L12: 0.7469 REMARK 3 L13: 0.1781 L23: 0.6904 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.0319 S13: -0.0431 REMARK 3 S21: -0.4577 S22: 0.2321 S23: -0.0717 REMARK 3 S31: -0.3153 S32: -0.0694 S33: -0.1924 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 37.0109 -71.4289 -16.3451 REMARK 3 T TENSOR REMARK 3 T11: -0.1110 T22: -0.0089 REMARK 3 T33: 0.0852 T12: -0.2315 REMARK 3 T13: 0.0887 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.7555 L22: 2.9414 REMARK 3 L33: 2.2110 L12: -1.7984 REMARK 3 L13: -0.2660 L23: 0.8522 REMARK 3 S TENSOR REMARK 3 S11: 0.1312 S12: 0.0751 S13: 0.3759 REMARK 3 S21: -0.2583 S22: 0.0449 S23: -0.5790 REMARK 3 S31: -0.3350 S32: 0.4883 S33: -0.1762 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -1.6140 -73.2674 -0.0663 REMARK 3 T TENSOR REMARK 3 T11: -0.0366 T22: -0.0822 REMARK 3 T33: -0.0084 T12: -0.1145 REMARK 3 T13: 0.0352 T23: -0.0810 REMARK 3 L TENSOR REMARK 3 L11: 1.6923 L22: 2.3210 REMARK 3 L33: 2.8420 L12: 0.5352 REMARK 3 L13: -0.9205 L23: -0.1982 REMARK 3 S TENSOR REMARK 3 S11: -0.0951 S12: 0.0726 S13: -0.1514 REMARK 3 S21: 0.1867 S22: -0.0875 S23: 0.2785 REMARK 3 S31: -0.0523 S32: -0.1753 S33: 0.1827 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MPK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190315 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20190315 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17473 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 74.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.804 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.99 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 5WB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG-8000, 8% ETHYLENE GLYCOL, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.15000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.30000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.30000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 199 REMARK 465 ALA A 200 REMARK 465 PRO A 201 REMARK 465 TYR A 202 REMARK 465 GLU A 203 REMARK 465 TYR A 204 REMARK 465 ARG A 205 REMARK 465 LYS A 206 REMARK 465 LEU A 207 REMARK 465 GLY A 208 REMARK 465 GLN A 209 REMARK 465 GLU A 210 REMARK 465 TRP A 211 REMARK 465 LYS A 212 REMARK 465 TYR A 213 REMARK 465 ARG A 214 REMARK 465 LEU A 215 REMARK 465 GLU A 216 REMARK 465 LYS A 217 REMARK 465 GLU A 218 REMARK 465 PRO A 219 REMARK 465 TRP A 220 REMARK 465 ARG A 221 REMARK 465 TYR A 222 REMARK 465 LYS A 223 REMARK 465 ARG A 224 REMARK 465 MET A 225 REMARK 465 MET A 226 REMARK 465 ALA A 227 REMARK 465 LEU A 228 REMARK 465 PRO A 229 REMARK 465 LYS A 230 REMARK 465 PHE A 231 REMARK 465 ALA A 232 REMARK 465 ILE A 233 REMARK 465 LYS A 234 REMARK 465 VAL A 235 REMARK 465 LEU A 236 REMARK 465 LEU A 237 REMARK 465 HIS A 238 REMARK 465 LYS A 239 REMARK 465 ARG A 240 REMARK 465 GLU A 241 REMARK 465 VAL A 242 REMARK 465 VAL A 243 REMARK 465 ARG A 244 REMARK 465 MET B 1 REMARK 465 ALA B 200 REMARK 465 PRO B 201 REMARK 465 TYR B 202 REMARK 465 GLU B 203 REMARK 465 TYR B 204 REMARK 465 ARG B 205 REMARK 465 LYS B 206 REMARK 465 LEU B 207 REMARK 465 GLY B 208 REMARK 465 GLN B 209 REMARK 465 GLU B 210 REMARK 465 TRP B 211 REMARK 465 LYS B 212 REMARK 465 TYR B 213 REMARK 465 ARG B 214 REMARK 465 LEU B 215 REMARK 465 GLU B 216 REMARK 465 LYS B 217 REMARK 465 GLU B 218 REMARK 465 PRO B 219 REMARK 465 TRP B 220 REMARK 465 ARG B 221 REMARK 465 TYR B 222 REMARK 465 LYS B 223 REMARK 465 ARG B 224 REMARK 465 MET B 225 REMARK 465 MET B 226 REMARK 465 ALA B 227 REMARK 465 LEU B 228 REMARK 465 PRO B 229 REMARK 465 LYS B 230 REMARK 465 PHE B 231 REMARK 465 ALA B 232 REMARK 465 ILE B 233 REMARK 465 LYS B 234 REMARK 465 VAL B 235 REMARK 465 LEU B 236 REMARK 465 LEU B 237 REMARK 465 HIS B 238 REMARK 465 LYS B 239 REMARK 465 ARG B 240 REMARK 465 GLU B 241 REMARK 465 VAL B 242 REMARK 465 VAL B 243 REMARK 465 ARG B 244 REMARK 465 LYS C 198 REMARK 465 ARG C 199 REMARK 465 ALA C 200 REMARK 465 PRO C 201 REMARK 465 TYR C 202 REMARK 465 GLU C 203 REMARK 465 TYR C 204 REMARK 465 ARG C 205 REMARK 465 LYS C 206 REMARK 465 LEU C 207 REMARK 465 GLY C 208 REMARK 465 GLN C 209 REMARK 465 GLU C 210 REMARK 465 TRP C 211 REMARK 465 LYS C 212 REMARK 465 TYR C 213 REMARK 465 ARG C 214 REMARK 465 LEU C 215 REMARK 465 GLU C 216 REMARK 465 LYS C 217 REMARK 465 GLU C 218 REMARK 465 PRO C 219 REMARK 465 TRP C 220 REMARK 465 ARG C 221 REMARK 465 TYR C 222 REMARK 465 LYS C 223 REMARK 465 ARG C 224 REMARK 465 MET C 225 REMARK 465 MET C 226 REMARK 465 ALA C 227 REMARK 465 LEU C 228 REMARK 465 PRO C 229 REMARK 465 LYS C 230 REMARK 465 PHE C 231 REMARK 465 ALA C 232 REMARK 465 ILE C 233 REMARK 465 LYS C 234 REMARK 465 VAL C 235 REMARK 465 LEU C 236 REMARK 465 LEU C 237 REMARK 465 HIS C 238 REMARK 465 LYS C 239 REMARK 465 ARG C 240 REMARK 465 GLU C 241 REMARK 465 VAL C 242 REMARK 465 VAL C 243 REMARK 465 ARG C 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 17 CG1 CG2 CD1 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 50 CD CE NZ REMARK 470 LYS A 74 CE NZ REMARK 470 LYS A 100 CD CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 VAL A 197 CG1 CG2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 ILE B 17 CG1 CG2 CD1 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 17 CG1 CG2 CD1 REMARK 470 LYS C 50 CD CE NZ REMARK 470 LYS C 100 CD CE NZ REMARK 470 LYS C 123 CG CD CE NZ REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 LYS C 145 CG CD CE NZ REMARK 470 GLU C 148 OE1 OE2 REMARK 470 LYS C 196 CG CD CE NZ REMARK 470 VAL C 197 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 109 164.11 69.35 REMARK 500 GLN A 112 -8.50 80.46 REMARK 500 ALA B 109 166.34 75.53 REMARK 500 GLN B 112 -8.12 79.33 REMARK 500 PRO C 79 170.25 -59.94 REMARK 500 ALA C 109 162.38 72.00 REMARK 500 GLN C 112 -4.42 77.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 C 300 DBREF 7MPK A 1 244 UNP D3T4E0 D3T4E0_THEIA 1 244 DBREF 7MPK B 1 244 UNP D3T4E0 D3T4E0_THEIA 1 244 DBREF 7MPK C 1 244 UNP D3T4E0 D3T4E0_THEIA 1 244 SEQADV 7MPK ALA A 111 UNP D3T4E0 CYS 111 ENGINEERED MUTATION SEQADV 7MPK GLU A 203 UNP D3T4E0 ILE 203 ENGINEERED MUTATION SEQADV 7MPK GLN A 209 UNP D3T4E0 LEU 209 ENGINEERED MUTATION SEQADV 7MPK LYS A 212 UNP D3T4E0 LEU 212 ENGINEERED MUTATION SEQADV 7MPK GLU A 216 UNP D3T4E0 ILE 216 ENGINEERED MUTATION SEQADV 7MPK ALA B 111 UNP D3T4E0 CYS 111 ENGINEERED MUTATION SEQADV 7MPK GLU B 203 UNP D3T4E0 ILE 203 ENGINEERED MUTATION SEQADV 7MPK GLN B 209 UNP D3T4E0 LEU 209 ENGINEERED MUTATION SEQADV 7MPK LYS B 212 UNP D3T4E0 LEU 212 ENGINEERED MUTATION SEQADV 7MPK GLU B 216 UNP D3T4E0 ILE 216 ENGINEERED MUTATION SEQADV 7MPK ALA C 111 UNP D3T4E0 CYS 111 ENGINEERED MUTATION SEQADV 7MPK GLU C 203 UNP D3T4E0 ILE 203 ENGINEERED MUTATION SEQADV 7MPK GLN C 209 UNP D3T4E0 LEU 209 ENGINEERED MUTATION SEQADV 7MPK LYS C 212 UNP D3T4E0 LEU 212 ENGINEERED MUTATION SEQADV 7MPK GLU C 216 UNP D3T4E0 ILE 216 ENGINEERED MUTATION SEQRES 1 A 244 MET GLU ARG LEU ASP ILE PHE GLY VAL PRO ILE ASP ARG SEQRES 2 A 244 VAL THR MET ILE GLN ALA VAL ASP ILE LEU ASN ASN PHE SEQRES 3 A 244 LEU GLN GLU ASN ARG LEU HIS ILE VAL ALA THR PRO ASN SEQRES 4 A 244 ALA GLU ILE VAL MET MET ALA GLN LYS ASP LYS GLU TYR SEQRES 5 A 244 MET GLU ILE LEU ASN ASN THR ASP LEU ASN VAL PRO ASP SEQRES 6 A 244 GLY SER GLY ILE VAL PHE ALA SER LYS VAL PHE LYS LYS SEQRES 7 A 244 PRO LEU PRO GLU ARG VAL ALA GLY PHE ASP LEU MET LEU SEQRES 8 A 244 GLU PHE ILE LYS GLY ILE SER SER LYS GLY VAL LYS ILE SEQRES 9 A 244 TYR LEU LEU GLY ALA ALA ALA GLN VAL ALA GLU GLN ALA SEQRES 10 A 244 ARG ALA ASN LEU GLU LYS LEU TYR PRO GLY VAL LYS ILE SEQRES 11 A 244 VAL GLY THR HIS HIS GLY TYR PHE THR GLU GLU GLU GLU SEQRES 12 A 244 ASN LYS ILE ILE GLU GLU ILE ASN ASN LYS GLY ALA GLU SEQRES 13 A 244 VAL LEU PHE VAL ALA LEU GLY ALA PRO LYS GLN GLU LYS SEQRES 14 A 244 TRP ILE TYR LYS ASN LYS ASP LYS LEU LYS VAL LYS ILE SEQRES 15 A 244 ALA MET GLY VAL GLY GLY SER PHE ASP VAL ILE ALA GLY SEQRES 16 A 244 LYS VAL LYS ARG ALA PRO TYR GLU TYR ARG LYS LEU GLY SEQRES 17 A 244 GLN GLU TRP LYS TYR ARG LEU GLU LYS GLU PRO TRP ARG SEQRES 18 A 244 TYR LYS ARG MET MET ALA LEU PRO LYS PHE ALA ILE LYS SEQRES 19 A 244 VAL LEU LEU HIS LYS ARG GLU VAL VAL ARG SEQRES 1 B 244 MET GLU ARG LEU ASP ILE PHE GLY VAL PRO ILE ASP ARG SEQRES 2 B 244 VAL THR MET ILE GLN ALA VAL ASP ILE LEU ASN ASN PHE SEQRES 3 B 244 LEU GLN GLU ASN ARG LEU HIS ILE VAL ALA THR PRO ASN SEQRES 4 B 244 ALA GLU ILE VAL MET MET ALA GLN LYS ASP LYS GLU TYR SEQRES 5 B 244 MET GLU ILE LEU ASN ASN THR ASP LEU ASN VAL PRO ASP SEQRES 6 B 244 GLY SER GLY ILE VAL PHE ALA SER LYS VAL PHE LYS LYS SEQRES 7 B 244 PRO LEU PRO GLU ARG VAL ALA GLY PHE ASP LEU MET LEU SEQRES 8 B 244 GLU PHE ILE LYS GLY ILE SER SER LYS GLY VAL LYS ILE SEQRES 9 B 244 TYR LEU LEU GLY ALA ALA ALA GLN VAL ALA GLU GLN ALA SEQRES 10 B 244 ARG ALA ASN LEU GLU LYS LEU TYR PRO GLY VAL LYS ILE SEQRES 11 B 244 VAL GLY THR HIS HIS GLY TYR PHE THR GLU GLU GLU GLU SEQRES 12 B 244 ASN LYS ILE ILE GLU GLU ILE ASN ASN LYS GLY ALA GLU SEQRES 13 B 244 VAL LEU PHE VAL ALA LEU GLY ALA PRO LYS GLN GLU LYS SEQRES 14 B 244 TRP ILE TYR LYS ASN LYS ASP LYS LEU LYS VAL LYS ILE SEQRES 15 B 244 ALA MET GLY VAL GLY GLY SER PHE ASP VAL ILE ALA GLY SEQRES 16 B 244 LYS VAL LYS ARG ALA PRO TYR GLU TYR ARG LYS LEU GLY SEQRES 17 B 244 GLN GLU TRP LYS TYR ARG LEU GLU LYS GLU PRO TRP ARG SEQRES 18 B 244 TYR LYS ARG MET MET ALA LEU PRO LYS PHE ALA ILE LYS SEQRES 19 B 244 VAL LEU LEU HIS LYS ARG GLU VAL VAL ARG SEQRES 1 C 244 MET GLU ARG LEU ASP ILE PHE GLY VAL PRO ILE ASP ARG SEQRES 2 C 244 VAL THR MET ILE GLN ALA VAL ASP ILE LEU ASN ASN PHE SEQRES 3 C 244 LEU GLN GLU ASN ARG LEU HIS ILE VAL ALA THR PRO ASN SEQRES 4 C 244 ALA GLU ILE VAL MET MET ALA GLN LYS ASP LYS GLU TYR SEQRES 5 C 244 MET GLU ILE LEU ASN ASN THR ASP LEU ASN VAL PRO ASP SEQRES 6 C 244 GLY SER GLY ILE VAL PHE ALA SER LYS VAL PHE LYS LYS SEQRES 7 C 244 PRO LEU PRO GLU ARG VAL ALA GLY PHE ASP LEU MET LEU SEQRES 8 C 244 GLU PHE ILE LYS GLY ILE SER SER LYS GLY VAL LYS ILE SEQRES 9 C 244 TYR LEU LEU GLY ALA ALA ALA GLN VAL ALA GLU GLN ALA SEQRES 10 C 244 ARG ALA ASN LEU GLU LYS LEU TYR PRO GLY VAL LYS ILE SEQRES 11 C 244 VAL GLY THR HIS HIS GLY TYR PHE THR GLU GLU GLU GLU SEQRES 12 C 244 ASN LYS ILE ILE GLU GLU ILE ASN ASN LYS GLY ALA GLU SEQRES 13 C 244 VAL LEU PHE VAL ALA LEU GLY ALA PRO LYS GLN GLU LYS SEQRES 14 C 244 TRP ILE TYR LYS ASN LYS ASP LYS LEU LYS VAL LYS ILE SEQRES 15 C 244 ALA MET GLY VAL GLY GLY SER PHE ASP VAL ILE ALA GLY SEQRES 16 C 244 LYS VAL LYS ARG ALA PRO TYR GLU TYR ARG LYS LEU GLY SEQRES 17 C 244 GLN GLU TRP LYS TYR ARG LEU GLU LYS GLU PRO TRP ARG SEQRES 18 C 244 TYR LYS ARG MET MET ALA LEU PRO LYS PHE ALA ILE LYS SEQRES 19 C 244 VAL LEU LEU HIS LYS ARG GLU VAL VAL ARG HET UD1 A 300 78 HET UD1 B 300 78 HET UD1 C 300 78 HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 4 UD1 3(C17 H27 N3 O17 P2) FORMUL 7 HOH *2(H2 O) HELIX 1 AA1 THR A 15 LEU A 27 1 13 HELIX 2 AA2 ASN A 39 ASP A 49 1 11 HELIX 3 AA3 ASP A 49 ASN A 57 1 9 HELIX 4 AA4 ASP A 65 SER A 73 1 9 HELIX 5 AA5 LYS A 74 PHE A 76 5 3 HELIX 6 AA6 ALA A 85 LYS A 100 1 16 HELIX 7 AA7 GLN A 112 TYR A 125 1 14 HELIX 8 AA8 THR A 139 LYS A 153 1 15 HELIX 9 AA9 PRO A 165 ASN A 174 1 10 HELIX 10 AB1 GLY A 188 ALA A 194 1 7 HELIX 11 AB2 THR B 15 LEU B 27 1 13 HELIX 12 AB3 ASN B 39 ASP B 49 1 11 HELIX 13 AB4 ASP B 49 ASN B 57 1 9 HELIX 14 AB5 ASP B 65 SER B 73 1 9 HELIX 15 AB6 LYS B 74 PHE B 76 5 3 HELIX 16 AB7 ALA B 85 LYS B 100 1 16 HELIX 17 AB8 GLN B 112 TYR B 125 1 14 HELIX 18 AB9 THR B 139 LYS B 153 1 15 HELIX 19 AC1 PRO B 165 ASN B 174 1 10 HELIX 20 AC2 GLY B 188 ALA B 194 1 7 HELIX 21 AC3 THR C 15 LEU C 27 1 13 HELIX 22 AC4 ASN C 39 ASP C 49 1 11 HELIX 23 AC5 ASP C 49 ASN C 57 1 9 HELIX 24 AC6 ASP C 65 SER C 73 1 9 HELIX 25 AC7 LYS C 74 PHE C 76 5 3 HELIX 26 AC8 ALA C 85 LYS C 100 1 16 HELIX 27 AC9 GLN C 112 TYR C 125 1 14 HELIX 28 AD1 THR C 139 GLU C 141 5 3 HELIX 29 AD2 GLU C 142 LYS C 153 1 12 HELIX 30 AD3 PRO C 165 ASN C 174 1 10 HELIX 31 AD4 GLY C 188 ALA C 194 1 7 SHEET 1 AA1 2 ARG A 3 ILE A 6 0 SHEET 2 AA1 2 VAL A 9 ASP A 12 -1 O ILE A 11 N LEU A 4 SHEET 1 AA2 6 LEU A 61 ASN A 62 0 SHEET 2 AA2 6 HIS A 33 ALA A 36 1 N ALA A 36 O LEU A 61 SHEET 3 AA2 6 ILE A 182 GLY A 185 1 O ALA A 183 N VAL A 35 SHEET 4 AA2 6 VAL A 157 ALA A 161 1 N VAL A 160 O MET A 184 SHEET 5 AA2 6 LYS A 103 GLY A 108 1 N LEU A 107 O ALA A 161 SHEET 6 AA2 6 LYS A 129 HIS A 134 1 O LYS A 129 N ILE A 104 SHEET 1 AA3 2 ARG B 3 ILE B 6 0 SHEET 2 AA3 2 VAL B 9 ASP B 12 -1 O ILE B 11 N LEU B 4 SHEET 1 AA4 6 LEU B 61 ASN B 62 0 SHEET 2 AA4 6 HIS B 33 ALA B 36 1 N ALA B 36 O LEU B 61 SHEET 3 AA4 6 ILE B 182 GLY B 185 1 O ALA B 183 N HIS B 33 SHEET 4 AA4 6 VAL B 157 ALA B 161 1 N VAL B 160 O MET B 184 SHEET 5 AA4 6 LYS B 103 GLY B 108 1 N TYR B 105 O VAL B 157 SHEET 6 AA4 6 LYS B 129 HIS B 134 1 O HIS B 134 N GLY B 108 SHEET 1 AA5 2 ARG C 3 ILE C 6 0 SHEET 2 AA5 2 VAL C 9 ASP C 12 -1 O ILE C 11 N LEU C 4 SHEET 1 AA6 6 LEU C 61 ASN C 62 0 SHEET 2 AA6 6 HIS C 33 ALA C 36 1 N ALA C 36 O LEU C 61 SHEET 3 AA6 6 ILE C 182 GLY C 185 1 O ALA C 183 N VAL C 35 SHEET 4 AA6 6 VAL C 157 ALA C 161 1 N VAL C 160 O MET C 184 SHEET 5 AA6 6 LYS C 103 GLY C 108 1 N LEU C 107 O ALA C 161 SHEET 6 AA6 6 LYS C 129 HIS C 134 1 O LYS C 129 N ILE C 104 CISPEP 1 ALA A 164 PRO A 165 0 0.89 CISPEP 2 ALA B 164 PRO B 165 0 0.71 CISPEP 3 ALA C 164 PRO C 165 0 2.36 SITE 1 AC1 20 THR A 37 ASN A 39 MET A 45 ALA A 109 SITE 2 AC1 20 ALA A 110 GLY A 136 TYR A 137 ALA A 161 SITE 3 AC1 20 LEU A 162 GLY A 163 ALA A 164 LYS A 166 SITE 4 AC1 20 GLN A 167 VAL A 186 GLY A 187 GLY A 188 SITE 5 AC1 20 SER A 189 ASP A 191 LYS B 77 ASN C 30 SITE 1 AC2 24 GLU A 141 LYS A 145 GLU A 148 THR B 37 SITE 2 AC2 24 ASN B 39 ILE B 42 MET B 45 ASP B 65 SITE 3 AC2 24 PHE B 87 ALA B 109 ALA B 110 GLY B 136 SITE 4 AC2 24 TYR B 137 ALA B 161 LEU B 162 GLY B 163 SITE 5 AC2 24 ALA B 164 LYS B 166 GLN B 167 GLY B 187 SITE 6 AC2 24 GLY B 188 ASP B 191 VAL B 192 LYS C 77 SITE 1 AC3 20 LYS A 77 THR C 37 ASN C 39 MET C 45 SITE 2 AC3 20 PHE C 87 ALA C 109 ALA C 110 GLY C 136 SITE 3 AC3 20 TYR C 137 ALA C 161 LEU C 162 GLY C 163 SITE 4 AC3 20 LYS C 166 GLN C 167 VAL C 186 GLY C 187 SITE 5 AC3 20 GLY C 188 SER C 189 ASP C 191 VAL C 192 CRYST1 113.240 113.240 114.450 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008831 0.005098 0.000000 0.00000 SCALE2 0.000000 0.010197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008737 0.00000