HEADER VIRAL PROTEIN 11-MAY-21 7MSL TITLE STRUCTURE OF ANTI-CRISPR ACRIIC4 FROM HAEMOPHILUS PARAINFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACRIIC4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAINFLUENZAE; SOURCE 3 ORGANISM_TAXID: 729; SOURCE 4 GENE: NCTC10672_00033, NCTC10672_02354; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ANTI-CRISPR PROTEINS, ACRIIC4, A HAEMOPHILUS PARAINFLUENZAE PROPHAGE, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.PAN,K.L.MAXWELL,T.F.MORAES REVDAT 2 22-MAY-24 7MSL 1 REMARK REVDAT 1 23-MAR-22 7MSL 0 JRNL AUTH S.HWANG,C.PAN,B.GARCIA,A.R.DAVIDSON,T.F.MORAES,K.L.MAXWELL JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHT INTO CRISPR-CAS9 JRNL TITL 2 INHIBITION BY ANTI-CRISPR PROTEIN ACRIIC4 HPA. JRNL REF J.MOL.BIOL. V. 434 67420 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 34954237 JRNL DOI 10.1016/J.JMB.2021.167420 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8700 - 3.3200 1.00 1430 159 0.2339 0.2684 REMARK 3 2 3.3200 - 2.6300 1.00 1337 149 0.2379 0.2632 REMARK 3 3 2.6300 - 2.3000 1.00 1301 144 0.2075 0.2618 REMARK 3 4 2.3000 - 2.0900 1.00 1310 146 0.2194 0.2659 REMARK 3 5 2.0900 - 1.9400 1.00 1289 144 0.2391 0.2740 REMARK 3 6 1.9400 - 1.8300 1.00 1287 143 0.2979 0.3117 REMARK 3 7 1.8300 - 1.7300 1.00 1281 142 0.3426 0.3662 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 715 REMARK 3 ANGLE : 0.536 958 REMARK 3 CHIRALITY : 0.034 105 REMARK 3 PLANARITY : 0.003 125 REMARK 3 DIHEDRAL : 17.871 447 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:49) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6290 13.8565 8.2353 REMARK 3 T TENSOR REMARK 3 T11: 0.1371 T22: 0.1772 REMARK 3 T33: 0.1282 T12: -0.0144 REMARK 3 T13: 0.0078 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 6.1003 L22: 7.5697 REMARK 3 L33: 0.9940 L12: -3.2503 REMARK 3 L13: -0.1040 L23: 0.9093 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.0830 S13: 0.0077 REMARK 3 S21: 0.1098 S22: 0.1282 S23: 0.3634 REMARK 3 S31: -0.0189 S32: -0.0289 S33: -0.1374 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 50:88) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0164 56.9335 6.1717 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.2043 REMARK 3 T33: 0.1961 T12: 0.0026 REMARK 3 T13: 0.0059 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 5.9273 L22: 4.4996 REMARK 3 L33: 0.9913 L12: -5.0001 REMARK 3 L13: 1.2857 L23: -1.2237 REMARK 3 S TENSOR REMARK 3 S11: 0.2568 S12: 0.1258 S13: -0.6314 REMARK 3 S21: -0.7559 S22: -0.2422 S23: 0.4503 REMARK 3 S31: 0.1704 S32: 0.0543 S33: 0.0018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10268 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 36.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 600, 0.1M NAHPO4/CITRIC ACID REMARK 280 PH 4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.22500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.22500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.22500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.22500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.22500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.22500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 82.45000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 82.45000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 233 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 DBREF1 7MSL A 1 88 UNP A0A377JKY9_HAEPA DBREF2 7MSL A A0A377JKY9 1 88 SEQADV 7MSL GLY A -3 UNP A0A377JKY EXPRESSION TAG SEQADV 7MSL SER A -2 UNP A0A377JKY EXPRESSION TAG SEQADV 7MSL MET A -1 UNP A0A377JKY EXPRESSION TAG SEQADV 7MSL ALA A 0 UNP A0A377JKY EXPRESSION TAG SEQADV 7MSL SER A 6 UNP A0A377JKY ALA 6 CONFLICT SEQADV 7MSL GLU A 29 UNP A0A377JKY ASN 29 CONFLICT SEQADV 7MSL LYS A 64 UNP A0A377JKY GLN 64 CONFLICT SEQRES 1 A 92 GLY SER MET ALA MET LYS ILE THR SER SER ASN PHE ALA SEQRES 2 A 92 THR ILE ALA THR SER GLU ASN PHE ALA LYS LEU SER VAL SEQRES 3 A 92 LEU PRO LYS ASN HIS ARG GLU PRO ILE LYS GLY LEU PHE SEQRES 4 A 92 LYS SER ALA VAL GLU GLN PHE SER SER ALA ARG ASP PHE SEQRES 5 A 92 PHE LYS ASN GLU ASN TYR SER LYS GLU LEU ALA GLU LYS SEQRES 6 A 92 PHE ASN LYS GLU ALA VAL ASN GLU ALA VAL GLU LYS LEU SEQRES 7 A 92 GLN LYS ALA ILE ASP LEU ALA GLU LYS GLN GLY ILE GLN SEQRES 8 A 92 PHE HET IOD A 101 1 HET IOD A 102 1 HET IOD A 103 1 HETNAM IOD IODIDE ION FORMUL 2 IOD 3(I 1-) FORMUL 5 HOH *33(H2 O) HELIX 1 AA1 ASN A 7 ALA A 12 1 6 HELIX 2 AA2 THR A 13 LEU A 20 1 8 HELIX 3 AA3 SER A 21 LEU A 23 5 3 HELIX 4 AA4 PRO A 24 GLN A 84 1 61 CRYST1 82.450 82.450 27.340 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.036576 0.00000