data_7MU1 # _entry.id 7MU1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.352 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7MU1 pdb_00007mu1 10.2210/pdb7mu1/pdb WWPDB D_1000256863 ? ? EMDB EMD-24001 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Thermotoga maritima encapsulin shell' _pdbx_database_related.db_id EMD-24001 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7MU1 _pdbx_database_status.recvd_initial_deposition_date 2021-05-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'LaFrance, B.J.' 1 0000-0003-0229-5255 'Nogales, E.' 2 0000-0001-9816-3681 'Savage, D.F.' 3 0000-0003-0042-2257 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 22810 _citation.page_last 22810 _citation.title 'The encapsulin from Thermotoga maritima is a flavoprotein with a symmetry matched ferritin-like cargo protein.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-021-01932-w _citation.pdbx_database_id_PubMed 34815415 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'LaFrance, B.J.' 1 ? primary 'Cassidy-Amstutz, C.' 2 ? primary 'Nichols, R.J.' 3 ? primary 'Oltrogge, L.M.' 4 ? primary 'Nogales, E.' 5 ? primary 'Savage, D.F.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7MU1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Maritimacin 30369.615 1 3.4.-.- ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thermotoga bacteriocin, T maritima encapsulin shell protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLK ; _entity_poly.pdbx_seq_one_letter_code_can ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 PHE n 1 4 LEU n 1 5 LYS n 1 6 ARG n 1 7 SER n 1 8 PHE n 1 9 ALA n 1 10 PRO n 1 11 LEU n 1 12 THR n 1 13 GLU n 1 14 LYS n 1 15 GLN n 1 16 TRP n 1 17 GLN n 1 18 GLU n 1 19 ILE n 1 20 ASP n 1 21 ASN n 1 22 ARG n 1 23 ALA n 1 24 ARG n 1 25 GLU n 1 26 ILE n 1 27 PHE n 1 28 LYS n 1 29 THR n 1 30 GLN n 1 31 LEU n 1 32 TYR n 1 33 GLY n 1 34 ARG n 1 35 LYS n 1 36 PHE n 1 37 VAL n 1 38 ASP n 1 39 VAL n 1 40 GLU n 1 41 GLY n 1 42 PRO n 1 43 TYR n 1 44 GLY n 1 45 TRP n 1 46 GLU n 1 47 TYR n 1 48 ALA n 1 49 ALA n 1 50 HIS n 1 51 PRO n 1 52 LEU n 1 53 GLY n 1 54 GLU n 1 55 VAL n 1 56 GLU n 1 57 VAL n 1 58 LEU n 1 59 SER n 1 60 ASP n 1 61 GLU n 1 62 ASN n 1 63 GLU n 1 64 VAL n 1 65 VAL n 1 66 LYS n 1 67 TRP n 1 68 GLY n 1 69 LEU n 1 70 ARG n 1 71 LYS n 1 72 SER n 1 73 LEU n 1 74 PRO n 1 75 LEU n 1 76 ILE n 1 77 GLU n 1 78 LEU n 1 79 ARG n 1 80 ALA n 1 81 THR n 1 82 PHE n 1 83 THR n 1 84 LEU n 1 85 ASP n 1 86 LEU n 1 87 TRP n 1 88 GLU n 1 89 LEU n 1 90 ASP n 1 91 ASN n 1 92 LEU n 1 93 GLU n 1 94 ARG n 1 95 GLY n 1 96 LYS n 1 97 PRO n 1 98 ASN n 1 99 VAL n 1 100 ASP n 1 101 LEU n 1 102 SER n 1 103 SER n 1 104 LEU n 1 105 GLU n 1 106 GLU n 1 107 THR n 1 108 VAL n 1 109 ARG n 1 110 LYS n 1 111 VAL n 1 112 ALA n 1 113 GLU n 1 114 PHE n 1 115 GLU n 1 116 ASP n 1 117 GLU n 1 118 VAL n 1 119 ILE n 1 120 PHE n 1 121 ARG n 1 122 GLY n 1 123 CYS n 1 124 GLU n 1 125 LYS n 1 126 SER n 1 127 GLY n 1 128 VAL n 1 129 LYS n 1 130 GLY n 1 131 LEU n 1 132 LEU n 1 133 SER n 1 134 PHE n 1 135 GLU n 1 136 GLU n 1 137 ARG n 1 138 LYS n 1 139 ILE n 1 140 GLU n 1 141 CYS n 1 142 GLY n 1 143 SER n 1 144 THR n 1 145 PRO n 1 146 LYS n 1 147 ASP n 1 148 LEU n 1 149 LEU n 1 150 GLU n 1 151 ALA n 1 152 ILE n 1 153 VAL n 1 154 ARG n 1 155 ALA n 1 156 LEU n 1 157 SER n 1 158 ILE n 1 159 PHE n 1 160 SER n 1 161 LYS n 1 162 ASP n 1 163 GLY n 1 164 ILE n 1 165 GLU n 1 166 GLY n 1 167 PRO n 1 168 TYR n 1 169 THR n 1 170 LEU n 1 171 VAL n 1 172 ILE n 1 173 ASN n 1 174 THR n 1 175 ASP n 1 176 ARG n 1 177 TRP n 1 178 ILE n 1 179 ASN n 1 180 PHE n 1 181 LEU n 1 182 LYS n 1 183 GLU n 1 184 GLU n 1 185 ALA n 1 186 GLY n 1 187 HIS n 1 188 TYR n 1 189 PRO n 1 190 LEU n 1 191 GLU n 1 192 LYS n 1 193 ARG n 1 194 VAL n 1 195 GLU n 1 196 GLU n 1 197 CYS n 1 198 LEU n 1 199 ARG n 1 200 GLY n 1 201 GLY n 1 202 LYS n 1 203 ILE n 1 204 ILE n 1 205 THR n 1 206 THR n 1 207 PRO n 1 208 ARG n 1 209 ILE n 1 210 GLU n 1 211 ASP n 1 212 ALA n 1 213 LEU n 1 214 VAL n 1 215 VAL n 1 216 SER n 1 217 GLU n 1 218 ARG n 1 219 GLY n 1 220 GLY n 1 221 ASP n 1 222 PHE n 1 223 LYS n 1 224 LEU n 1 225 ILE n 1 226 LEU n 1 227 GLY n 1 228 GLN n 1 229 ASP n 1 230 LEU n 1 231 SER n 1 232 ILE n 1 233 GLY n 1 234 TYR n 1 235 GLU n 1 236 ASP n 1 237 ARG n 1 238 GLU n 1 239 LYS n 1 240 ASP n 1 241 ALA n 1 242 VAL n 1 243 ARG n 1 244 LEU n 1 245 PHE n 1 246 ILE n 1 247 THR n 1 248 GLU n 1 249 THR n 1 250 PHE n 1 251 THR n 1 252 PHE n 1 253 GLN n 1 254 VAL n 1 255 VAL n 1 256 ASN n 1 257 PRO n 1 258 GLU n 1 259 ALA n 1 260 LEU n 1 261 ILE n 1 262 LEU n 1 263 LEU n 1 264 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 264 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_0785 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 43589 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MARIT_THEMA _struct_ref.pdbx_db_accession Q9WZP2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLK ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7MU1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 264 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WZP2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 264 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 267 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7MU1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7MU1 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 2215 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.527 ? 2995 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.666 ? 294 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.042 ? 329 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 381 ? f_plane_restr ? ? # _struct.entry_id 7MU1 _struct.title 'Thermotoga maritima encapsulin shell' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7MU1 _struct_keywords.text 'Encapsulin, Ferritin-like protein, EncFLP, Thermotoga, FMN, Bacterial Nanocompartment, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 5 ? ALA A 9 ? LYS A 8 ALA A 12 5 ? 5 HELX_P HELX_P2 AA2 THR A 12 ? LEU A 31 ? THR A 15 LEU A 34 1 ? 20 HELX_P HELX_P3 AA3 TYR A 32 ? PHE A 36 ? TYR A 35 PHE A 39 5 ? 5 HELX_P HELX_P4 AA4 LEU A 86 ? GLY A 95 ? LEU A 89 GLY A 98 1 ? 10 HELX_P HELX_P5 AA5 LEU A 101 ? ARG A 121 ? LEU A 104 ARG A 124 1 ? 21 HELX_P HELX_P6 AA6 LEU A 131 ? GLU A 136 ? LEU A 134 GLU A 139 5 ? 6 HELX_P HELX_P7 AA7 THR A 144 ? GLY A 163 ? THR A 147 GLY A 166 1 ? 20 HELX_P HELX_P8 AA8 THR A 174 ? GLU A 183 ? THR A 177 GLU A 186 1 ? 10 HELX_P HELX_P9 AA9 PRO A 189 ? LEU A 198 ? PRO A 192 LEU A 201 1 ? 10 HELX_P HELX_P10 AB1 ASN A 256 ? GLU A 258 ? ASN A 259 GLU A 261 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 38 ? GLU A 40 ? ASP A 41 GLU A 43 AA1 2 PHE A 222 ? ARG A 237 ? PHE A 225 ARG A 240 AA1 3 ALA A 241 ? VAL A 254 ? ALA A 244 VAL A 257 AA1 4 ILE A 76 ? ASP A 85 ? ILE A 79 ASP A 88 AA2 1 ALA A 49 ? VAL A 57 ? ALA A 52 VAL A 60 AA2 2 GLY A 68 ? PRO A 74 ? GLY A 71 PRO A 77 AA3 1 GLY A 122 ? CYS A 123 ? GLY A 125 CYS A 126 AA3 2 VAL A 128 ? LYS A 129 ? VAL A 131 LYS A 132 AA4 1 LYS A 138 ? ILE A 139 ? LYS A 141 ILE A 142 AA4 2 LEU A 260 ? LEU A 263 ? LEU A 263 LEU A 266 AA4 3 ALA A 212 ? SER A 216 ? ALA A 215 SER A 219 AA4 4 TYR A 168 ? ASN A 173 ? TYR A 171 ASN A 176 AA4 5 LYS A 202 ? THR A 206 ? LYS A 205 THR A 209 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASP A 38 ? N ASP A 41 O PHE A 222 ? O PHE A 225 AA1 2 3 N GLY A 227 ? N GLY A 230 O THR A 249 ? O THR A 252 AA1 3 4 O PHE A 250 ? O PHE A 253 N ILE A 76 ? N ILE A 79 AA2 1 2 N GLU A 56 ? N GLU A 59 O LEU A 69 ? O LEU A 72 AA3 1 2 N CYS A 123 ? N CYS A 126 O VAL A 128 ? O VAL A 131 AA4 1 2 N ILE A 139 ? N ILE A 142 O LEU A 262 ? O LEU A 265 AA4 2 3 O ILE A 261 ? O ILE A 264 N VAL A 214 ? N VAL A 217 AA4 3 4 O LEU A 213 ? O LEU A 216 N VAL A 171 ? N VAL A 174 AA4 4 5 N LEU A 170 ? N LEU A 173 O ILE A 204 ? O ILE A 207 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FMN _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'binding site for residue FMN A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 TRP A 87 ? TRP A 90 . ? 1_555 ? 2 AC1 3 ASP A 90 ? ASP A 93 . ? 1_555 ? 3 AC1 3 ARG A 94 ? ARG A 97 . ? 1_555 ? # _atom_sites.entry_id 7MU1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 4 4 MET MET A . n A 1 2 GLU 2 5 5 GLU GLU A . n A 1 3 PHE 3 6 6 PHE PHE A . n A 1 4 LEU 4 7 7 LEU LEU A . n A 1 5 LYS 5 8 8 LYS LYS A . n A 1 6 ARG 6 9 9 ARG ARG A . n A 1 7 SER 7 10 10 SER SER A . n A 1 8 PHE 8 11 11 PHE PHE A . n A 1 9 ALA 9 12 12 ALA ALA A . n A 1 10 PRO 10 13 13 PRO PRO A . n A 1 11 LEU 11 14 14 LEU LEU A . n A 1 12 THR 12 15 15 THR THR A . n A 1 13 GLU 13 16 16 GLU GLU A . n A 1 14 LYS 14 17 17 LYS LYS A . n A 1 15 GLN 15 18 18 GLN GLN A . n A 1 16 TRP 16 19 19 TRP TRP A . n A 1 17 GLN 17 20 20 GLN GLN A . n A 1 18 GLU 18 21 21 GLU GLU A . n A 1 19 ILE 19 22 22 ILE ILE A . n A 1 20 ASP 20 23 23 ASP ASP A . n A 1 21 ASN 21 24 24 ASN ASN A . n A 1 22 ARG 22 25 25 ARG ARG A . n A 1 23 ALA 23 26 26 ALA ALA A . n A 1 24 ARG 24 27 27 ARG ARG A . n A 1 25 GLU 25 28 28 GLU GLU A . n A 1 26 ILE 26 29 29 ILE ILE A . n A 1 27 PHE 27 30 30 PHE PHE A . n A 1 28 LYS 28 31 31 LYS LYS A . n A 1 29 THR 29 32 32 THR THR A . n A 1 30 GLN 30 33 33 GLN GLN A . n A 1 31 LEU 31 34 34 LEU LEU A . n A 1 32 TYR 32 35 35 TYR TYR A . n A 1 33 GLY 33 36 36 GLY GLY A . n A 1 34 ARG 34 37 37 ARG ARG A . n A 1 35 LYS 35 38 38 LYS LYS A . n A 1 36 PHE 36 39 39 PHE PHE A . n A 1 37 VAL 37 40 40 VAL VAL A . n A 1 38 ASP 38 41 41 ASP ASP A . n A 1 39 VAL 39 42 42 VAL VAL A . n A 1 40 GLU 40 43 43 GLU GLU A . n A 1 41 GLY 41 44 44 GLY GLY A . n A 1 42 PRO 42 45 45 PRO PRO A . n A 1 43 TYR 43 46 46 TYR TYR A . n A 1 44 GLY 44 47 47 GLY GLY A . n A 1 45 TRP 45 48 48 TRP TRP A . n A 1 46 GLU 46 49 49 GLU GLU A . n A 1 47 TYR 47 50 50 TYR TYR A . n A 1 48 ALA 48 51 51 ALA ALA A . n A 1 49 ALA 49 52 52 ALA ALA A . n A 1 50 HIS 50 53 53 HIS HIS A . n A 1 51 PRO 51 54 54 PRO PRO A . n A 1 52 LEU 52 55 55 LEU LEU A . n A 1 53 GLY 53 56 56 GLY GLY A . n A 1 54 GLU 54 57 57 GLU GLU A . n A 1 55 VAL 55 58 58 VAL VAL A . n A 1 56 GLU 56 59 59 GLU GLU A . n A 1 57 VAL 57 60 60 VAL VAL A . n A 1 58 LEU 58 61 61 LEU LEU A . n A 1 59 SER 59 62 62 SER SER A . n A 1 60 ASP 60 63 63 ASP ASP A . n A 1 61 GLU 61 64 64 GLU GLU A . n A 1 62 ASN 62 65 65 ASN ASN A . n A 1 63 GLU 63 66 66 GLU GLU A . n A 1 64 VAL 64 67 67 VAL VAL A . n A 1 65 VAL 65 68 68 VAL VAL A . n A 1 66 LYS 66 69 69 LYS LYS A . n A 1 67 TRP 67 70 70 TRP TRP A . n A 1 68 GLY 68 71 71 GLY GLY A . n A 1 69 LEU 69 72 72 LEU LEU A . n A 1 70 ARG 70 73 73 ARG ARG A . n A 1 71 LYS 71 74 74 LYS LYS A . n A 1 72 SER 72 75 75 SER SER A . n A 1 73 LEU 73 76 76 LEU LEU A . n A 1 74 PRO 74 77 77 PRO PRO A . n A 1 75 LEU 75 78 78 LEU LEU A . n A 1 76 ILE 76 79 79 ILE ILE A . n A 1 77 GLU 77 80 80 GLU GLU A . n A 1 78 LEU 78 81 81 LEU LEU A . n A 1 79 ARG 79 82 82 ARG ARG A . n A 1 80 ALA 80 83 83 ALA ALA A . n A 1 81 THR 81 84 84 THR THR A . n A 1 82 PHE 82 85 85 PHE PHE A . n A 1 83 THR 83 86 86 THR THR A . n A 1 84 LEU 84 87 87 LEU LEU A . n A 1 85 ASP 85 88 88 ASP ASP A . n A 1 86 LEU 86 89 89 LEU LEU A . n A 1 87 TRP 87 90 90 TRP TRP A . n A 1 88 GLU 88 91 91 GLU GLU A . n A 1 89 LEU 89 92 92 LEU LEU A . n A 1 90 ASP 90 93 93 ASP ASP A . n A 1 91 ASN 91 94 94 ASN ASN A . n A 1 92 LEU 92 95 95 LEU LEU A . n A 1 93 GLU 93 96 96 GLU GLU A . n A 1 94 ARG 94 97 97 ARG ARG A . n A 1 95 GLY 95 98 98 GLY GLY A . n A 1 96 LYS 96 99 99 LYS LYS A . n A 1 97 PRO 97 100 100 PRO PRO A . n A 1 98 ASN 98 101 101 ASN ASN A . n A 1 99 VAL 99 102 102 VAL VAL A . n A 1 100 ASP 100 103 103 ASP ASP A . n A 1 101 LEU 101 104 104 LEU LEU A . n A 1 102 SER 102 105 105 SER SER A . n A 1 103 SER 103 106 106 SER SER A . n A 1 104 LEU 104 107 107 LEU LEU A . n A 1 105 GLU 105 108 108 GLU GLU A . n A 1 106 GLU 106 109 109 GLU GLU A . n A 1 107 THR 107 110 110 THR THR A . n A 1 108 VAL 108 111 111 VAL VAL A . n A 1 109 ARG 109 112 112 ARG ARG A . n A 1 110 LYS 110 113 113 LYS LYS A . n A 1 111 VAL 111 114 114 VAL VAL A . n A 1 112 ALA 112 115 115 ALA ALA A . n A 1 113 GLU 113 116 116 GLU GLU A . n A 1 114 PHE 114 117 117 PHE PHE A . n A 1 115 GLU 115 118 118 GLU GLU A . n A 1 116 ASP 116 119 119 ASP ASP A . n A 1 117 GLU 117 120 120 GLU GLU A . n A 1 118 VAL 118 121 121 VAL VAL A . n A 1 119 ILE 119 122 122 ILE ILE A . n A 1 120 PHE 120 123 123 PHE PHE A . n A 1 121 ARG 121 124 124 ARG ARG A . n A 1 122 GLY 122 125 125 GLY GLY A . n A 1 123 CYS 123 126 126 CYS CYS A . n A 1 124 GLU 124 127 127 GLU GLU A . n A 1 125 LYS 125 128 128 LYS LYS A . n A 1 126 SER 126 129 129 SER SER A . n A 1 127 GLY 127 130 130 GLY GLY A . n A 1 128 VAL 128 131 131 VAL VAL A . n A 1 129 LYS 129 132 132 LYS LYS A . n A 1 130 GLY 130 133 133 GLY GLY A . n A 1 131 LEU 131 134 134 LEU LEU A . n A 1 132 LEU 132 135 135 LEU LEU A . n A 1 133 SER 133 136 136 SER SER A . n A 1 134 PHE 134 137 137 PHE PHE A . n A 1 135 GLU 135 138 138 GLU GLU A . n A 1 136 GLU 136 139 139 GLU GLU A . n A 1 137 ARG 137 140 140 ARG ARG A . n A 1 138 LYS 138 141 141 LYS LYS A . n A 1 139 ILE 139 142 142 ILE ILE A . n A 1 140 GLU 140 143 143 GLU GLU A . n A 1 141 CYS 141 144 144 CYS CYS A . n A 1 142 GLY 142 145 145 GLY GLY A . n A 1 143 SER 143 146 146 SER SER A . n A 1 144 THR 144 147 147 THR THR A . n A 1 145 PRO 145 148 148 PRO PRO A . n A 1 146 LYS 146 149 149 LYS LYS A . n A 1 147 ASP 147 150 150 ASP ASP A . n A 1 148 LEU 148 151 151 LEU LEU A . n A 1 149 LEU 149 152 152 LEU LEU A . n A 1 150 GLU 150 153 153 GLU GLU A . n A 1 151 ALA 151 154 154 ALA ALA A . n A 1 152 ILE 152 155 155 ILE ILE A . n A 1 153 VAL 153 156 156 VAL VAL A . n A 1 154 ARG 154 157 157 ARG ARG A . n A 1 155 ALA 155 158 158 ALA ALA A . n A 1 156 LEU 156 159 159 LEU LEU A . n A 1 157 SER 157 160 160 SER SER A . n A 1 158 ILE 158 161 161 ILE ILE A . n A 1 159 PHE 159 162 162 PHE PHE A . n A 1 160 SER 160 163 163 SER SER A . n A 1 161 LYS 161 164 164 LYS LYS A . n A 1 162 ASP 162 165 165 ASP ASP A . n A 1 163 GLY 163 166 166 GLY GLY A . n A 1 164 ILE 164 167 167 ILE ILE A . n A 1 165 GLU 165 168 168 GLU GLU A . n A 1 166 GLY 166 169 169 GLY GLY A . n A 1 167 PRO 167 170 170 PRO PRO A . n A 1 168 TYR 168 171 171 TYR TYR A . n A 1 169 THR 169 172 172 THR THR A . n A 1 170 LEU 170 173 173 LEU LEU A . n A 1 171 VAL 171 174 174 VAL VAL A . n A 1 172 ILE 172 175 175 ILE ILE A . n A 1 173 ASN 173 176 176 ASN ASN A . n A 1 174 THR 174 177 177 THR THR A . n A 1 175 ASP 175 178 178 ASP ASP A . n A 1 176 ARG 176 179 179 ARG ARG A . n A 1 177 TRP 177 180 180 TRP TRP A . n A 1 178 ILE 178 181 181 ILE ILE A . n A 1 179 ASN 179 182 182 ASN ASN A . n A 1 180 PHE 180 183 183 PHE PHE A . n A 1 181 LEU 181 184 184 LEU LEU A . n A 1 182 LYS 182 185 185 LYS LYS A . n A 1 183 GLU 183 186 186 GLU GLU A . n A 1 184 GLU 184 187 187 GLU GLU A . n A 1 185 ALA 185 188 188 ALA ALA A . n A 1 186 GLY 186 189 189 GLY GLY A . n A 1 187 HIS 187 190 190 HIS HIS A . n A 1 188 TYR 188 191 191 TYR TYR A . n A 1 189 PRO 189 192 192 PRO PRO A . n A 1 190 LEU 190 193 193 LEU LEU A . n A 1 191 GLU 191 194 194 GLU GLU A . n A 1 192 LYS 192 195 195 LYS LYS A . n A 1 193 ARG 193 196 196 ARG ARG A . n A 1 194 VAL 194 197 197 VAL VAL A . n A 1 195 GLU 195 198 198 GLU GLU A . n A 1 196 GLU 196 199 199 GLU GLU A . n A 1 197 CYS 197 200 200 CYS CYS A . n A 1 198 LEU 198 201 201 LEU LEU A . n A 1 199 ARG 199 202 202 ARG ARG A . n A 1 200 GLY 200 203 203 GLY GLY A . n A 1 201 GLY 201 204 204 GLY GLY A . n A 1 202 LYS 202 205 205 LYS LYS A . n A 1 203 ILE 203 206 206 ILE ILE A . n A 1 204 ILE 204 207 207 ILE ILE A . n A 1 205 THR 205 208 208 THR THR A . n A 1 206 THR 206 209 209 THR THR A . n A 1 207 PRO 207 210 210 PRO PRO A . n A 1 208 ARG 208 211 211 ARG ARG A . n A 1 209 ILE 209 212 212 ILE ILE A . n A 1 210 GLU 210 213 213 GLU GLU A . n A 1 211 ASP 211 214 214 ASP ASP A . n A 1 212 ALA 212 215 215 ALA ALA A . n A 1 213 LEU 213 216 216 LEU LEU A . n A 1 214 VAL 214 217 217 VAL VAL A . n A 1 215 VAL 215 218 218 VAL VAL A . n A 1 216 SER 216 219 219 SER SER A . n A 1 217 GLU 217 220 220 GLU GLU A . n A 1 218 ARG 218 221 221 ARG ARG A . n A 1 219 GLY 219 222 222 GLY GLY A . n A 1 220 GLY 220 223 223 GLY GLY A . n A 1 221 ASP 221 224 224 ASP ASP A . n A 1 222 PHE 222 225 225 PHE PHE A . n A 1 223 LYS 223 226 226 LYS LYS A . n A 1 224 LEU 224 227 227 LEU LEU A . n A 1 225 ILE 225 228 228 ILE ILE A . n A 1 226 LEU 226 229 229 LEU LEU A . n A 1 227 GLY 227 230 230 GLY GLY A . n A 1 228 GLN 228 231 231 GLN GLN A . n A 1 229 ASP 229 232 232 ASP ASP A . n A 1 230 LEU 230 233 233 LEU LEU A . n A 1 231 SER 231 234 234 SER SER A . n A 1 232 ILE 232 235 235 ILE ILE A . n A 1 233 GLY 233 236 236 GLY GLY A . n A 1 234 TYR 234 237 237 TYR TYR A . n A 1 235 GLU 235 238 238 GLU GLU A . n A 1 236 ASP 236 239 239 ASP ASP A . n A 1 237 ARG 237 240 240 ARG ARG A . n A 1 238 GLU 238 241 241 GLU GLU A . n A 1 239 LYS 239 242 242 LYS LYS A . n A 1 240 ASP 240 243 243 ASP ASP A . n A 1 241 ALA 241 244 244 ALA ALA A . n A 1 242 VAL 242 245 245 VAL VAL A . n A 1 243 ARG 243 246 246 ARG ARG A . n A 1 244 LEU 244 247 247 LEU LEU A . n A 1 245 PHE 245 248 248 PHE PHE A . n A 1 246 ILE 246 249 249 ILE ILE A . n A 1 247 THR 247 250 250 THR THR A . n A 1 248 GLU 248 251 251 GLU GLU A . n A 1 249 THR 249 252 252 THR THR A . n A 1 250 PHE 250 253 253 PHE PHE A . n A 1 251 THR 251 254 254 THR THR A . n A 1 252 PHE 252 255 255 PHE PHE A . n A 1 253 GLN 253 256 256 GLN GLN A . n A 1 254 VAL 254 257 257 VAL VAL A . n A 1 255 VAL 255 258 258 VAL VAL A . n A 1 256 ASN 256 259 259 ASN ASN A . n A 1 257 PRO 257 260 260 PRO PRO A . n A 1 258 GLU 258 261 261 GLU GLU A . n A 1 259 ALA 259 262 262 ALA ALA A . n A 1 260 LEU 260 263 263 LEU LEU A . n A 1 261 ILE 261 264 264 ILE ILE A . n A 1 262 LEU 262 265 265 LEU LEU A . n A 1 263 LEU 263 266 266 LEU LEU A . n A 1 264 LYS 264 267 267 LYS LYS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FMN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 402 _pdbx_nonpoly_scheme.pdb_mon_id FMN _pdbx_nonpoly_scheme.auth_mon_id FMN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.30901699 0.80901699 -0.50000000 -129.73770 -0.80901699 0.50000000 0.30901699 0.00000 0.50000000 0.30901699 0.80901699 -339.65770 1 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901700 -0.80901699 0.50000000 209.92001 0.80901699 0.50000000 0.30901700 -129.73770 -0.50000000 0.30901700 0.80901699 80.18231 3 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901700 419.84001 0.50000000 -0.30901700 0.80901700 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.80901700 0.50000000 -0.30901700 339.65770 -0.50000000 -0.30901699 0.80901700 209.92001 0.30901700 0.80901699 0.50000000 -129.73770 5 'point symmetry operation' ? ? 0.30901699 0.80901700 -0.50000000 80.18231 -0.80901699 0.50000000 0.30901699 209.92001 0.50000000 0.30901699 0.80901700 -129.73770 6 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 80.18231 0.30901700 -0.80901699 0.50000001 209.92001 0.80901700 0.49999999 0.30901699 -129.73770 7 'point symmetry operation' ? ? -0.30901700 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901700 419.84001 0.50000000 -0.30901700 0.80901699 0.00000 8 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 -129.73770 -0.80901700 0.50000000 -0.30901699 339.65770 -0.50000000 -0.30901700 0.80901699 209.92001 9 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 -129.73770 0.30901699 0.80901700 -0.50000000 80.18231 -0.80901700 0.50000000 0.30901699 209.92000 10 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 11 'point symmetry operation' ? ? 0.30901699 -0.80901700 -0.49999999 419.84001 -0.80901699 -0.50000000 0.30901699 419.84002 -0.50000001 0.30901700 -0.80901699 419.84000 12 'point symmetry operation' ? ? -0.30901700 -0.80901699 -0.50000000 549.57771 -0.80901699 0.50000000 -0.30901700 339.65770 0.50000000 0.30901700 -0.80901699 209.92000 13 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901700 549.57771 0.30901699 0.80901699 -0.50000000 80.18231 0.80901700 -0.50000000 -0.30901699 209.92000 14 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 419.84001 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 419.84001 15 'point symmetry operation' ? ? 0.50000000 -0.30901700 -0.80901699 339.65770 0.30901700 -0.80901700 0.50000000 209.92001 -0.80901700 -0.50000000 -0.30901699 549.57770 16 'point symmetry operation' ? ? -0.80901699 0.50000001 -0.30901700 339.65770 0.49999999 0.30901699 -0.80901700 209.92001 -0.30901699 -0.80901699 -0.50000000 549.57770 17 'point symmetry operation' ? ? 0.30901700 0.80901699 -0.50000000 80.18230 0.80901699 -0.50000000 -0.30901700 209.92001 -0.50000000 -0.30901700 -0.80901699 549.57770 18 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 419.84001 0.00000000 0.00000000 -1.00000000 419.84001 19 'point symmetry operation' ? ? 0.30901699 -0.80901700 0.50000000 209.92001 -0.80901699 -0.50000000 -0.30901700 549.57771 0.50000000 -0.30901699 -0.80901699 339.65770 20 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 419.84001 -0.50000000 0.30901699 -0.80901700 419.84001 0.30901700 -0.80901699 -0.50000000 419.84001 21 'point symmetry operation' ? ? -0.49999999 -0.30901699 0.80901700 209.92001 0.30901699 0.80901699 0.50000000 -129.73770 -0.80901699 0.50000001 -0.30901700 339.65770 22 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901700 209.92000 0.50000000 0.30901700 0.80901699 -129.73769 0.30901700 0.80901699 -0.50000000 80.18230 23 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 24 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901700 -129.73770 -0.50000000 0.30901699 0.80901699 80.18231 0.30901699 -0.80901700 0.50000000 209.92001 25 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901700 0.00000 -0.30901700 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 419.84001 26 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 0.50000001 -0.30901700 0.80901699 0.00000 0.30901699 -0.80901700 -0.49999999 419.84001 27 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901700 80.18231 -0.50000000 -0.30901700 0.80901699 209.92001 -0.30901700 -0.80901699 -0.50000000 549.57771 28 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 339.65771 -0.80901700 0.50000000 0.30901699 209.92001 -0.50000000 -0.30901699 -0.80901700 549.57770 29 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 419.84001 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 419.84000 30 'point symmetry operation' ? ? -0.30901700 0.80901700 -0.50000000 209.92000 0.80901700 0.50000000 0.30901699 -129.73770 0.50000000 -0.30901700 -0.80901699 339.65770 31 'point symmetry operation' ? ? -0.30901700 0.80901699 -0.50000001 209.92000 -0.80901700 -0.49999999 -0.30901699 549.57771 -0.50000000 0.30901699 0.80901699 80.18231 32 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901700 0.00000 -0.50000000 0.30901700 -0.80901699 419.84001 -0.30901700 0.80901699 0.50000000 0.00000 33 'point symmetry operation' ? ? 0.80901700 -0.50000000 0.30901699 80.18231 0.50000000 0.30901700 -0.80901699 209.92000 0.30901699 0.80901699 0.50000000 -129.73770 34 'point symmetry operation' ? ? -0.30901699 -0.80901700 0.50000000 339.65771 0.80901700 -0.50000000 -0.30901699 209.92001 0.50000000 0.30901699 0.80901699 -129.73770 35 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 419.84001 0.00000000 -1.00000000 0.00000000 419.84001 0.00000000 0.00000000 1.00000000 0.00000 36 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 419.84001 0.00000000 0.00000000 -1.00000000 419.84001 1.00000000 0.00000000 0.00000000 0.00000 37 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901700 549.57771 0.50000000 -0.30901700 -0.80901699 339.65770 0.30901700 -0.80901699 0.50000000 209.92000 38 'point symmetry operation' ? ? -0.50000000 0.30901700 -0.80901700 419.84001 0.30901699 -0.80901700 -0.50000000 419.84001 -0.80901699 -0.50000000 0.30901700 419.84001 39 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901700 209.92000 -0.30901700 -0.80901699 -0.50000000 549.57771 -0.80901700 0.50000000 -0.30901700 339.65770 40 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 209.92001 -0.50000000 -0.30901699 -0.80901700 549.57771 0.30901699 0.80901700 -0.50000000 80.18230 41 'point symmetry operation' ? ? -0.50000001 0.30901700 -0.80901699 419.84001 -0.30901699 0.80901700 0.49999999 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 42 'point symmetry operation' ? ? 0.50000000 0.30901700 -0.80901699 209.92000 0.30901700 0.80901699 0.50000000 -129.73770 0.80901699 -0.50000000 0.30901700 80.18231 43 'point symmetry operation' ? ? 0.80901700 -0.50000000 -0.30901699 209.92000 0.50000000 0.30901699 0.80901700 -129.73769 -0.30901699 -0.80901699 0.50000000 339.65770 44 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 419.84001 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 419.84001 45 'point symmetry operation' ? ? -0.80901700 -0.50000000 -0.30901699 549.57771 -0.50000000 0.30901700 0.80901699 80.18231 -0.30901700 0.80901700 -0.50000000 209.92000 46 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 549.57771 0.80901699 -0.50000001 0.30901700 80.18231 -0.49999999 -0.30901699 0.80901700 209.92000 47 'point symmetry operation' ? ? -0.50000000 -0.30901700 -0.80901699 549.57771 -0.30901700 -0.80901699 0.50000000 339.65771 -0.80901699 0.50000000 0.30901700 209.92000 48 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 419.84001 -1.00000000 0.00000000 0.00000000 419.84001 0.00000000 1.00000000 0.00000000 0.00000 49 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 339.65770 -0.30901699 0.80901700 -0.50000000 209.92000 0.80901699 0.50000000 0.30901700 -129.73770 50 'point symmetry operation' ? ? 0.30901700 -0.80901699 -0.50000000 419.84001 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901700 0.00000 51 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 419.84001 0.00000000 -1.00000000 0.00000000 419.84001 52 'point symmetry operation' ? ? -0.50000000 0.30901700 0.80901699 80.18231 -0.30901700 0.80901699 -0.50000000 209.92001 -0.80901699 -0.50000000 -0.30901700 549.57771 53 'point symmetry operation' ? ? -0.30901699 0.80901700 0.50000000 0.00000 0.80901699 0.50000000 -0.30901700 0.00000 -0.50000000 0.30901700 -0.80901700 419.84001 54 'point symmetry operation' ? ? 0.30901700 0.80901699 0.50000000 -129.73770 0.80901700 -0.50000000 0.30901700 80.18231 0.50000000 0.30901699 -0.80901700 209.92000 55 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901700 -129.73770 -0.30901699 -0.80901700 0.50000000 339.65771 0.80901699 -0.50000000 -0.30901699 209.92000 56 'point symmetry operation' ? ? 0.80901700 0.49999999 0.30901699 -129.73770 0.50000000 -0.30901699 -0.80901699 339.65770 -0.30901700 0.80901699 -0.50000001 209.92000 57 'point symmetry operation' ? ? 0.50000000 -0.30901700 0.80901699 0.00000 0.30901700 -0.80901699 -0.50000000 419.84001 0.80901699 0.50000000 -0.30901700 0.00000 58 'point symmetry operation' ? ? -0.50000000 -0.30901700 0.80901699 209.92001 -0.30901699 -0.80901699 -0.50000000 549.57771 0.80901700 -0.50000000 0.30901699 80.18231 59 'point symmetry operation' ? ? -0.80901700 0.50000000 0.30901699 209.92001 -0.50000000 -0.30901699 -0.80901699 549.57771 -0.30901699 -0.80901700 0.50000000 339.65770 60 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 419.84001 -1.00000000 0.00000000 0.00000000 419.84001 # _pdbx_point_symmetry.entry_id 7MU1 _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-11-24 2 'Structure model' 1 1 2021-12-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation_author.identifier_ORCID' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19_4080: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7MU1 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7MU1 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 38 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 3DKT # _em_3d_reconstruction.entry_id 7MU1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 38952 _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '20 mM Tris-HCl, pH 7.4, 150 mM NaCl and 5 mM 2-mercaptoethanol' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name '3.3A cryo-EM map of the T. maritima encapsulin shell' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7MU1 _em_image_scans.id 1 _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 30 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7MU1 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2800 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.details 'blot force' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7MU1 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7MU1 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7MU1 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 210 ? ? -87.04 45.32 2 1 GLU A 241 ? ? -94.31 48.25 3 1 LYS A 242 ? ? 61.94 -9.65 4 1 ASP A 243 ? ? -134.81 -30.50 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details 'CTFFind4 implemented within RELION/3.0, CTFRefine was also performed after initial reconstruction was achieved.' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 1.83 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2336 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Thermotoga maritima' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'Images were saved in counting mode using leginon software, and subsequently processed in RELION.' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1276 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ;1000 particles were manually selected from random micrographs. 2D classification was performed on these 1000 particles, and 2D classes were used for relion auto picking ; _em_particle_selection.method ? _em_particle_selection.num_particles_selected 86124 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? Leginon ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? PHENIX ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.0 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Department of Energy (DOE, United States)' 'United States' DE-SC00016240 1 'National Science Foundation (NSF, United States)' 'United States' GRFP-1106400 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id FMN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id FMN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'FLAVIN MONONUCLEOTIDE' _pdbx_entity_nonpoly.comp_id FMN # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #