HEADER VIRAL PROTEIN/IMMUNE SYSTEM 17-MAY-21 7MWW TITLE STRUCTURE OF HEPATITIS C VIRUS ENVELOPE FULL-LENGTH GLYCOPROTEIN 2 TITLE 2 (EE2) FROM J6 GENOTYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CORE PROTEIN PRECURSOR EE2; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: ENVELOPE GLYCOPROTEIN E1,ENVELOPE GLYCOPROTEIN E2,GENOME COMPND 5 POLYPROTEIN,GP32,HEPACIVIRIN,MATURE CORE PROTEIN,NS1,NS3 HELICASE,NS3 COMPND 6 PROTEASE,NS3P,NS5B,NON-STRUCTURAL PROTEIN 4A,NON-STRUCTURAL PROTEIN COMPND 7 4B,NON-STRUCTURAL PROTEIN 5A,PROTEASE NS2,RNA-DIRECTED RNA COMPND 8 POLYMERASE,SERINE PROTEASE/HELICASE NS3,VIROPORIN P7,VIROPORIN P70, COMPND 9 GP35,GP68,GP70,P21,P23,P27,P56/58,P68,P8; COMPND 10 EC: 2.7.7.48,3.4.21.98,3.6.1.15,3.6.4.13; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: 2A12 FAB HEAVY CHAIN; COMPND 14 CHAIN: H; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: 2A12 FAB LIGHT CHAIN; COMPND 18 CHAIN: L; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPACIVIRUS C; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293T GNTI- CELLS; SOURCE 7 EXPRESSION_SYSTEM_TISSUE: LIVER; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS GLYCOPROTEIN, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,R.A.HOSSAIN,S.A.YOST,W.BU,Y.WANG,A.D.DEARBORN,A.GRAKOUI, AUTHOR 2 J.I.COHEN,J.MARCOTRIGIANO REVDAT 4 18-OCT-23 7MWW 1 REMARK REVDAT 3 03-NOV-21 7MWW 1 JRNL REVDAT 2 29-SEP-21 7MWW 1 JRNL REVDAT 1 15-SEP-21 7MWW 0 JRNL AUTH A.KUMAR,R.A.HOSSAIN,S.A.YOST,W.BU,Y.WANG,A.D.DEARBORN, JRNL AUTH 2 A.GRAKOUI,J.I.COHEN,J.MARCOTRIGIANO JRNL TITL STRUCTURAL INSIGHTS INTO HEPATITIS C VIRUS RECEPTOR BINDING JRNL TITL 2 AND ENTRY. JRNL REF NATURE V. 598 521 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34526719 JRNL DOI 10.1038/S41586-021-03913-5 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 49955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3300 - 7.0807 0.99 2666 142 0.2016 0.2238 REMARK 3 2 7.0807 - 5.6290 0.99 2668 111 0.2073 0.2011 REMARK 3 3 5.6290 - 4.9200 0.99 2714 102 0.1673 0.1967 REMARK 3 4 4.9200 - 4.4713 0.99 2660 127 0.1489 0.1637 REMARK 3 5 4.4713 - 4.1515 0.99 2656 114 0.1658 0.2072 REMARK 3 6 4.1515 - 3.9071 0.99 2680 139 0.1841 0.2477 REMARK 3 7 3.9071 - 3.7117 0.99 2626 151 0.1999 0.2679 REMARK 3 8 3.7117 - 3.5503 0.99 2661 112 0.2093 0.2702 REMARK 3 9 3.5503 - 3.4138 0.99 2654 147 0.2237 0.2850 REMARK 3 10 3.4138 - 3.2961 0.99 2610 161 0.2467 0.2988 REMARK 3 11 3.2961 - 3.1931 0.99 2657 135 0.2483 0.3452 REMARK 3 12 3.1931 - 3.1019 0.99 2611 163 0.2707 0.3272 REMARK 3 13 3.1019 - 3.0203 0.98 2655 124 0.2729 0.3090 REMARK 3 14 3.0203 - 2.9467 0.98 2612 132 0.2784 0.2972 REMARK 3 15 2.9467 - 2.8797 0.97 2611 150 0.2959 0.4042 REMARK 3 16 2.8797 - 2.8185 0.98 2579 172 0.3027 0.3754 REMARK 3 17 2.8185 - 2.7621 0.97 2602 131 0.3174 0.3850 REMARK 3 18 2.7621 - 2.7100 0.96 2575 145 0.3099 0.3487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4859 REMARK 3 ANGLE : 0.847 6660 REMARK 3 CHIRALITY : 0.047 766 REMARK 3 PLANARITY : 0.007 838 REMARK 3 DIHEDRAL : 3.366 2819 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.7880 26.6205 -13.4119 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1631 REMARK 3 T33: 0.1471 T12: 0.0304 REMARK 3 T13: 0.0212 T23: 0.0641 REMARK 3 L TENSOR REMARK 3 L11: 1.0750 L22: 0.6434 REMARK 3 L33: 2.4534 L12: -0.0348 REMARK 3 L13: 0.0118 L23: 0.2709 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0631 S13: -0.2254 REMARK 3 S21: -0.0808 S22: -0.0998 S23: -0.0486 REMARK 3 S31: 0.4839 S32: -0.0436 S33: 0.0482 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 33.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 1.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WEB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% V/V TACSIMATE PH 5.0, 14% W/V REMARK 280 PEG3350, AND 4% D-(+)-TREHALOSE DIHYDRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.71000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.71000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.78050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.78050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.71000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.78050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.71000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.92000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.78050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, H, L, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG E 384 REMARK 465 THR E 385 REMARK 465 HIS E 386 REMARK 465 THR E 387 REMARK 465 VAL E 388 REMARK 465 GLY E 389 REMARK 465 GLY E 390 REMARK 465 SER E 391 REMARK 465 ALA E 392 REMARK 465 ALA E 393 REMARK 465 GLN E 394 REMARK 465 THR E 395 REMARK 465 THR E 396 REMARK 465 GLY E 397 REMARK 465 ARG E 398 REMARK 465 LEU E 399 REMARK 465 THR E 400 REMARK 465 SER E 401 REMARK 465 LEU E 402 REMARK 465 PHE E 403 REMARK 465 ASP E 404 REMARK 465 MET E 405 REMARK 465 GLY E 406 REMARK 465 PRO E 407 REMARK 465 ARG E 408 REMARK 465 GLN E 409 REMARK 465 LYS E 410 REMARK 465 ILE E 411 REMARK 465 GLN E 412 REMARK 465 LEU E 413 REMARK 465 VAL E 414 REMARK 465 ASN E 415 REMARK 465 THR E 416 REMARK 465 ASN E 417 REMARK 465 GLY E 418 REMARK 465 SER E 419 REMARK 465 TRP E 420 REMARK 465 HIS E 421 REMARK 465 GLU E 454 REMARK 465 ARG E 455 REMARK 465 MET E 456 REMARK 465 SER E 457 REMARK 465 ALA E 458 REMARK 465 CYS E 459 REMARK 465 ARG E 460 REMARK 465 SER E 461 REMARK 465 ILE E 462 REMARK 465 GLU E 463 REMARK 465 ALA E 464 REMARK 465 PHE E 465 REMARK 465 ARG E 466 REMARK 465 VAL E 467 REMARK 465 GLY E 468 REMARK 465 TRP E 469 REMARK 465 GLY E 470 REMARK 465 ALA E 471 REMARK 465 LEU E 472 REMARK 465 GLN E 473 REMARK 465 TYR E 474 REMARK 465 GLU E 475 REMARK 465 ASP E 476 REMARK 465 ASN E 477 REMARK 465 VAL E 478 REMARK 465 THR E 479 REMARK 465 ASN E 480 REMARK 465 PRO E 481 REMARK 465 GLU E 482 REMARK 465 ASP E 483 REMARK 465 MET E 484 REMARK 465 ARG E 485 REMARK 465 PRO E 486 REMARK 465 TYR E 487 REMARK 465 CYS E 488 REMARK 465 TRP E 489 REMARK 465 ARG E 572 REMARK 465 THR E 573 REMARK 465 ARG E 574 REMARK 465 ALA E 575 REMARK 465 ASP E 576 REMARK 465 PHE E 577 REMARK 465 ASN E 578 REMARK 465 ALA E 579 REMARK 465 SER E 580 REMARK 465 THR E 581 REMARK 465 ASP E 582 REMARK 465 LEU E 583 REMARK 465 LEU E 584 REMARK 465 CYS E 585 REMARK 465 PRO E 586 REMARK 465 THR E 587 REMARK 465 ASP E 588 REMARK 465 CYS E 589 REMARK 465 PHE E 590 REMARK 465 ARG E 591 REMARK 465 LYS E 592 REMARK 465 HIS E 593 REMARK 465 PRO E 594 REMARK 465 ASP E 595 REMARK 465 THR E 651 REMARK 465 ARG E 652 REMARK 465 GLY E 653 REMARK 465 ASP E 654 REMARK 465 ARG E 655 REMARK 465 PRO H 220 REMARK 465 THR H 221 REMARK 465 MET L -19 REMARK 465 GLU L -18 REMARK 465 SER L -17 REMARK 465 GLN L -16 REMARK 465 THR L -15 REMARK 465 GLN L -14 REMARK 465 VAL L -13 REMARK 465 LEU L -12 REMARK 465 MET L -11 REMARK 465 PHE L -10 REMARK 465 LEU L -9 REMARK 465 LEU L -8 REMARK 465 LEU L -7 REMARK 465 TRP L -6 REMARK 465 VAL L -5 REMARK 465 SER L -4 REMARK 465 GLY L -3 REMARK 465 ALA L -2 REMARK 465 CYS L -1 REMARK 465 ALA L 0 REMARK 465 GLU L 219 REMARK 465 CYS L 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG E 494 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 502 CG CD CE NZ REMARK 470 ARG E 523 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 524 CG CD1 CD2 REMARK 470 ASP E 537 CG OD1 OD2 REMARK 470 LYS L 148 CG CD CE NZ REMARK 470 LYS L 153 CG CD CE NZ REMARK 470 LYS L 155 CG CD CE NZ REMARK 470 ARG L 194 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP E 556 OG1 THR E 563 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS E 452 C PRO E 453 N 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS E 452 O - C - N ANGL. DEV. = 16.5 DEGREES REMARK 500 PRO E 453 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO E 453 C - N - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS E 434 60.79 -105.98 REMARK 500 THR E 435 -49.78 -17.89 REMARK 500 THR E 444 -9.19 71.48 REMARK 500 HIS E 445 -37.97 -134.22 REMARK 500 PHE E 447 84.55 -69.14 REMARK 500 SER E 449 47.04 -162.66 REMARK 500 PRO E 493 -145.57 -118.46 REMARK 500 ASP E 522 -145.59 -105.43 REMARK 500 LEU E 524 -158.08 -84.17 REMARK 500 THR E 530 33.76 -140.33 REMARK 500 GLU E 533 0.87 -164.33 REMARK 500 GLU E 535 64.86 36.87 REMARK 500 THR E 544 -89.10 -81.17 REMARK 500 THR E 565 -161.72 -100.99 REMARK 500 PRO E 570 -166.10 -71.39 REMARK 500 CYS E 601 71.11 -110.70 REMARK 500 SER E 603 -87.18 -126.57 REMARK 500 ASP H 100 -155.56 -109.92 REMARK 500 SER H 165 -64.78 -105.84 REMARK 500 GLN H 176 -92.55 -109.96 REMARK 500 SER H 177 79.38 -114.97 REMARK 500 LEU L 53 -60.97 -94.70 REMARK 500 ALA L 57 -40.78 68.84 REMARK 500 HIS L 97 50.10 -111.61 REMARK 500 TYR L 98 -60.05 -101.27 REMARK 500 SER L 197 -75.85 -91.34 REMARK 500 TYR L 198 93.30 65.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS E 434 THR E 435 141.43 REMARK 500 PHE E 511 THR E 512 128.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 804 DISTANCE = 5.88 ANGSTROMS DBREF1 7MWW E 384 655 UNP A0A2I6PIY1_9HEPC DBREF2 7MWW E A0A2I6PIY1 384 655 DBREF 7MWW H 1 221 PDB 7MWW 7MWW 1 221 DBREF 7MWW L -19 220 PDB 7MWW 7MWW -19 220 SEQRES 1 E 272 ARG THR HIS THR VAL GLY GLY SER ALA ALA GLN THR THR SEQRES 2 E 272 GLY ARG LEU THR SER LEU PHE ASP MET GLY PRO ARG GLN SEQRES 3 E 272 LYS ILE GLN LEU VAL ASN THR ASN GLY SER TRP HIS ILE SEQRES 4 E 272 ASN ARG THR ALA LEU ASN CYS ASN ASP SER LEU HIS THR SEQRES 5 E 272 GLY PHE ILE ALA SER LEU PHE TYR THR HIS SER PHE ASN SEQRES 6 E 272 SER SER GLY CYS PRO GLU ARG MET SER ALA CYS ARG SER SEQRES 7 E 272 ILE GLU ALA PHE ARG VAL GLY TRP GLY ALA LEU GLN TYR SEQRES 8 E 272 GLU ASP ASN VAL THR ASN PRO GLU ASP MET ARG PRO TYR SEQRES 9 E 272 CYS TRP HIS TYR PRO PRO ARG GLN CYS GLY VAL VAL SER SEQRES 10 E 272 ALA LYS THR VAL CYS GLY PRO VAL TYR CYS PHE THR PRO SEQRES 11 E 272 SER PRO VAL VAL VAL GLY THR THR ASP ARG LEU GLY ALA SEQRES 12 E 272 PRO THR TYR THR TRP GLY GLU ASN GLU THR ASP VAL PHE SEQRES 13 E 272 LEU LEU ASN SER THR ARG PRO PRO LEU GLY SER TRP PHE SEQRES 14 E 272 GLY CYS THR TRP MET ASN SER SER GLY TYR THR LYS THR SEQRES 15 E 272 CYS GLY ALA PRO PRO CYS ARG THR ARG ALA ASP PHE ASN SEQRES 16 E 272 ALA SER THR ASP LEU LEU CYS PRO THR ASP CYS PHE ARG SEQRES 17 E 272 LYS HIS PRO ASP THR THR TYR LEU LYS CYS GLY SER GLY SEQRES 18 E 272 PRO TRP LEU THR PRO ARG CYS LEU ILE ASP TYR PRO TYR SEQRES 19 E 272 ARG LEU TRP HIS TYR PRO CYS THR VAL ASN TYR THR ILE SEQRES 20 E 272 PHE LYS ILE ARG MET TYR VAL GLY GLY VAL GLU HIS ARG SEQRES 21 E 272 LEU THR ALA ALA CYS ASN PHE THR ARG GLY ASP ARG SEQRES 1 H 221 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS LEU SER CYS THR ALA SER GLY SEQRES 3 H 221 PHE ASN ILE LYS ASP THR TYR ILE HIS TRP VAL ASN GLN SEQRES 4 H 221 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 221 PRO ALA ASN GLY HIS THR GLN TYR ASP PRO LYS PHE GLN SEQRES 6 H 221 GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN THR SEQRES 7 H 221 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA THR SER ASP TYR SER TYR ALA SEQRES 9 H 221 LEU ASP SER TRP GLY GLN GLY THR SER VAL THR VAL SER SEQRES 10 H 221 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 221 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 H 221 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 221 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 221 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 221 SER SER SER VAL THR VAL THR SER SER THR TRP PRO SER SEQRES 16 H 221 GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 221 THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO THR SEQRES 1 L 240 MET GLU SER GLN THR GLN VAL LEU MET PHE LEU LEU LEU SEQRES 2 L 240 TRP VAL SER GLY ALA CYS ALA ASP ILE VAL MET THR GLN SEQRES 3 L 240 SER PRO SER SER LEU ALA MET SER VAL GLY GLN LYS VAL SEQRES 4 L 240 THR MET SER CYS LYS SER SER GLN SER LEU LEU ASN SER SEQRES 5 L 240 ASN ASN GLN LYS ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 6 L 240 PRO GLY GLN SER PRO LYS LEU LEU VAL TYR PHE ALA SER SEQRES 7 L 240 THR ARG GLU SER GLY VAL PRO ASP ARG PHE ILE GLY SER SEQRES 8 L 240 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER VAL SEQRES 9 L 240 GLN ALA GLU ASP LEU ALA ASP TYR PHE CYS GLN GLN HIS SEQRES 10 L 240 TYR SER THR PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 11 L 240 GLU ILE ARG ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 12 L 240 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 13 L 240 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 14 L 240 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 15 L 240 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 16 L 240 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 17 L 240 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 18 L 240 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 19 L 240 PHE ASN ARG ASN GLU CYS HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET NAG B 1 14 HET NAG B 2 14 HET NAG E 701 14 HET NAG E 702 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 6(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 8 HOH *102(H2 O) HELIX 1 AA1 PHE E 437 LEU E 441 5 5 HELIX 2 AA2 SER E 500 LYS E 502 5 3 HELIX 3 AA3 TYR E 617 TYR E 622 1 6 HELIX 4 AA4 ASN H 28 THR H 32 5 5 HELIX 5 AA5 PRO H 62 GLN H 65 5 4 HELIX 6 AA6 THR H 87 THR H 91 5 5 HELIX 7 AA7 SER H 161 SER H 163 5 3 HELIX 8 AA8 PRO H 205 SER H 208 5 4 HELIX 9 AA9 GLN L 85 LEU L 89 5 5 HELIX 10 AB1 SER L 127 GLY L 134 1 8 HELIX 11 AB2 LYS L 189 ARG L 194 1 6 SHEET 1 AA1 4 PRO E 515 VAL E 517 0 SHEET 2 AA1 4 VAL E 504 PHE E 511 -1 N CYS E 510 O VAL E 516 SHEET 3 AA1 4 GLY E 553 ASN E 558 -1 O GLY E 553 N PHE E 511 SHEET 4 AA1 4 THR E 565 GLY E 567 -1 O CYS E 566 N CYS E 554 SHEET 1 AA2 4 TRP E 606 THR E 608 0 SHEET 2 AA2 4 CYS E 611 ILE E 613 -1 O CYS E 611 N THR E 608 SHEET 3 AA2 4 VAL E 640 CYS E 648 -1 O ALA E 647 N LEU E 612 SHEET 4 AA2 4 THR E 629 VAL E 637 -1 N MET E 635 O HIS E 642 SHEET 1 AA3 4 GLN H 3 GLN H 6 0 SHEET 2 AA3 4 VAL H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 AA3 4 THR H 78 LEU H 83 -1 O LEU H 83 N VAL H 18 SHEET 4 AA3 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA4 6 GLU H 10 VAL H 12 0 SHEET 2 AA4 6 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA4 6 ALA H 92 SER H 99 -1 N ALA H 92 O VAL H 114 SHEET 4 AA4 6 TYR H 33 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 AA4 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ASN H 38 SHEET 6 AA4 6 THR H 58 TYR H 60 -1 O GLN H 59 N ARG H 50 SHEET 1 AA5 4 GLU H 10 VAL H 12 0 SHEET 2 AA5 4 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA5 4 ALA H 92 SER H 99 -1 N ALA H 92 O VAL H 114 SHEET 4 AA5 4 SER H 107 TRP H 108 -1 O SER H 107 N THR H 98 SHEET 1 AA6 4 SER H 125 LEU H 129 0 SHEET 2 AA6 4 SER H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 AA6 4 TYR H 180 THR H 189 -1 O LEU H 182 N VAL H 147 SHEET 4 AA6 4 VAL H 168 LEU H 175 -1 N PHE H 171 O SER H 183 SHEET 1 AA7 3 THR H 156 TRP H 159 0 SHEET 2 AA7 3 THR H 199 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 AA7 3 THR H 209 LYS H 214 -1 O LYS H 213 N CYS H 200 SHEET 1 AA8 4 MET L 4 SER L 7 0 SHEET 2 AA8 4 VAL L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA8 4 ASP L 76 ILE L 81 -1 O PHE L 77 N CYS L 23 SHEET 4 AA8 4 PHE L 68 SER L 73 -1 N SER L 71 O THR L 78 SHEET 1 AA9 6 SER L 10 SER L 14 0 SHEET 2 AA9 6 THR L 108 ARG L 113 1 O GLU L 111 N LEU L 11 SHEET 3 AA9 6 ALA L 90 GLN L 96 -1 N ALA L 90 O LEU L 110 SHEET 4 AA9 6 LEU L 39 GLN L 44 -1 N ALA L 40 O GLN L 95 SHEET 5 AA9 6 LYS L 51 TYR L 55 -1 O VAL L 54 N TRP L 41 SHEET 6 AA9 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 AB1 4 THR L 120 PHE L 124 0 SHEET 2 AB1 4 GLY L 135 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 AB1 4 TYR L 179 THR L 188 -1 O LEU L 187 N ALA L 136 SHEET 4 AB1 4 VAL L 165 TRP L 169 -1 N LEU L 166 O THR L 184 SHEET 1 AB2 4 SER L 159 ARG L 161 0 SHEET 2 AB2 4 ASN L 151 ILE L 156 -1 N ILE L 156 O SER L 159 SHEET 3 AB2 4 THR L 199 THR L 203 -1 O THR L 199 N LYS L 155 SHEET 4 AB2 4 ILE L 211 SER L 214 -1 O LYS L 213 N CYS L 200 SSBOND 1 CYS E 429 CYS E 505 1555 1555 2.03 SSBOND 2 CYS E 452 CYS E 624 1555 1555 2.01 SSBOND 3 CYS E 496 CYS E 566 1555 1555 2.05 SSBOND 4 CYS E 510 CYS E 554 1555 1555 2.05 SSBOND 5 CYS E 571 CYS E 601 1555 1555 2.04 SSBOND 6 CYS E 611 CYS E 648 1555 1555 2.10 SSBOND 7 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 8 CYS H 145 CYS H 200 1555 1555 2.01 SSBOND 9 CYS L 23 CYS L 94 1555 1555 2.05 SSBOND 10 CYS L 140 CYS L 200 1555 1555 2.04 LINK ND2 ASN E 423 C1 NAG E 702 1555 1555 1.49 LINK ND2 ASN E 558 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN E 627 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN E 649 C1 NAG E 701 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.45 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 PHE H 151 PRO H 152 0 -2.21 CISPEP 2 GLU H 153 PRO H 154 0 1.74 CISPEP 3 TRP H 193 PRO H 194 0 0.84 CISPEP 4 SER L 7 PRO L 8 0 -4.44 CISPEP 5 THR L 100 PRO L 101 0 -4.24 CISPEP 6 TYR L 146 PRO L 147 0 0.83 CRYST1 95.840 155.561 129.420 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010434 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007727 0.00000