HEADER OXIDOREDUCTASE 21-MAY-21 7MYM TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE IN TITLE 2 COMPLEX WITH TRIMETHOPRIM AND NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A, C, B; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FOLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-41A (+) KEYWDS DIHYDROFOLATE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ERLANDSEN,D.WRIGHT,J.KRUCINSKA REVDAT 3 18-OCT-23 7MYM 1 REMARK REVDAT 2 24-AUG-22 7MYM 1 JRNL REVDAT 1 01-JUN-22 7MYM 0 JRNL AUTH J.KRUCINSKA,M.N.LOMBARDO,H.ERLANDSEN,A.ESTRADA,D.SI, JRNL AUTH 2 K.VISWANATHAN,D.L.WRIGHT JRNL TITL STRUCTURE-GUIDED FUNCTIONAL STUDIES OF PLASMID-ENCODED JRNL TITL 2 DIHYDROFOLATE REDUCTASES REVEAL A COMMON MECHANISM OF JRNL TITL 3 TRIMETHOPRIM RESISTANCE IN GRAM-NEGATIVE PATHOGENS. JRNL REF COMMUN BIOL V. 5 459 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35562546 JRNL DOI 10.1038/S42003-022-03384-Y REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 7.1.001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 14913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 734 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3768 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 249 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.55000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.461 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.406 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.603 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7MYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15680 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 56.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.28900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.86300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 4PSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% TO 20% PEG4000 OR 8000, 0.2M REMARK 280 AMMONIUM SULFATE AND 2MM DTT., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.28900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.28900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.73500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.69850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.73500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.69850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.28900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.73500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.69850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.28900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.73500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.69850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 159 REMARK 465 ARG C 159 REMARK 465 ARG B 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 301 O HOH B 304 1.90 REMARK 500 OG SER A 63 O3X NAP A 202 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 10 153.02 -41.65 REMARK 500 TRP A 22 -53.83 -162.24 REMARK 500 ASN A 23 85.86 61.75 REMARK 500 PRO A 39 139.00 -33.84 REMARK 500 PRO A 66 153.76 -49.04 REMARK 500 PRO A 66 153.92 -49.13 REMARK 500 PRO A 126 171.05 -54.35 REMARK 500 PRO A 130 -6.33 -58.41 REMARK 500 PHE A 137 144.64 -179.28 REMARK 500 GLU A 139 112.34 -165.43 REMARK 500 ASP A 144 -166.91 -126.22 REMARK 500 ASN A 147 67.69 -100.05 REMARK 500 GLU C 17 38.94 70.21 REMARK 500 PRO C 21 43.15 -70.87 REMARK 500 ASN C 37 22.22 80.70 REMARK 500 ASP C 69 80.73 -166.25 REMARK 500 ASP C 116 88.74 -68.07 REMARK 500 ALA C 117 146.51 -174.58 REMARK 500 GLU C 129 65.44 -100.20 REMARK 500 PRO C 130 -1.37 -52.89 REMARK 500 ASP C 144 -169.29 -128.80 REMARK 500 ALA C 145 -74.03 -44.14 REMARK 500 ASP B 11 19.19 59.27 REMARK 500 TRP B 22 165.84 177.24 REMARK 500 ARG B 52 146.37 -177.36 REMARK 500 SER B 63 115.06 -178.70 REMARK 500 SER B 64 1.30 -69.56 REMARK 500 ALA B 117 141.35 -178.23 REMARK 500 PRO B 126 158.77 -48.60 REMARK 500 PRO B 130 -7.75 -59.04 REMARK 500 GLU B 139 91.86 -162.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 70 ARG C 71 149.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ARG A 201 REMARK 610 ARG C 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOP A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOP C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 DBREF 7MYM A 1 159 UNP P0ABQ5 DYR_ECOL6 1 159 DBREF 7MYM C 1 159 UNP P0ABQ5 DYR_ECOL6 1 159 DBREF 7MYM B 1 159 UNP P0ABQ5 DYR_ECOL6 1 159 SEQRES 1 A 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 A 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 A 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASN LYS PRO SEQRES 4 A 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 A 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 A 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 A 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 A 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 A 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 A 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 A 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 A 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE GLU ILE LEU SEQRES 13 A 159 GLU ARG ARG SEQRES 1 C 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 C 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 C 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASN LYS PRO SEQRES 4 C 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 C 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 C 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 C 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 C 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 C 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 C 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 C 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 C 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE GLU ILE LEU SEQRES 13 C 159 GLU ARG ARG SEQRES 1 B 159 MET ILE SER LEU ILE ALA ALA LEU ALA VAL ASP ARG VAL SEQRES 2 B 159 ILE GLY MET GLU ASN ALA MET PRO TRP ASN LEU PRO ALA SEQRES 3 B 159 ASP LEU ALA TRP PHE LYS ARG ASN THR LEU ASN LYS PRO SEQRES 4 B 159 VAL ILE MET GLY ARG HIS THR TRP GLU SER ILE GLY ARG SEQRES 5 B 159 PRO LEU PRO GLY ARG LYS ASN ILE ILE LEU SER SER GLN SEQRES 6 B 159 PRO GLY THR ASP ASP ARG VAL THR TRP VAL LYS SER VAL SEQRES 7 B 159 ASP GLU ALA ILE ALA ALA CYS GLY ASP VAL PRO GLU ILE SEQRES 8 B 159 MET VAL ILE GLY GLY GLY ARG VAL TYR GLU GLN PHE LEU SEQRES 9 B 159 PRO LYS ALA GLN LYS LEU TYR LEU THR HIS ILE ASP ALA SEQRES 10 B 159 GLU VAL GLU GLY ASP THR HIS PHE PRO ASP TYR GLU PRO SEQRES 11 B 159 ASP ASP TRP GLU SER VAL PHE SER GLU PHE HIS ASP ALA SEQRES 12 B 159 ASP ALA GLN ASN SER HIS SER TYR CYS PHE GLU ILE LEU SEQRES 13 B 159 GLU ARG ARG HET ARG A 201 11 HET NAP A 202 48 HET TOP A 203 21 HET SO4 A 204 5 HET SO4 A 205 5 HET ARG C 201 11 HET NAP C 202 48 HET TOP C 203 21 HET SO4 C 204 5 HET NAP B 201 48 HET TOP B 202 21 HET SO4 B 203 5 HETNAM ARG ARGININE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM TOP TRIMETHOPRIM HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 4 ARG 2(C6 H15 N4 O2 1+) FORMUL 5 NAP 3(C21 H28 N7 O17 P3) FORMUL 6 TOP 3(C14 H18 N4 O3) FORMUL 7 SO4 4(O4 S 2-) FORMUL 16 HOH *13(H2 O) HELIX 1 AA1 LEU A 24 LEU A 36 1 13 HELIX 2 AA2 ARG A 44 GLY A 51 1 8 HELIX 3 AA3 SER A 77 GLY A 86 1 10 HELIX 4 AA4 GLY A 96 LEU A 104 1 9 HELIX 5 AA5 ALA C 9 ASP C 11 5 3 HELIX 6 AA6 LEU C 24 LEU C 36 1 13 HELIX 7 AA7 ARG C 44 GLY C 51 1 8 HELIX 8 AA8 SER C 77 ALA C 84 1 8 HELIX 9 AA9 GLY C 96 LEU C 104 1 9 HELIX 10 AB1 ALA B 9 ASP B 11 5 3 HELIX 11 AB2 LEU B 24 LEU B 36 1 13 HELIX 12 AB3 ARG B 44 GLY B 51 1 8 HELIX 13 AB4 SER B 77 ALA B 84 1 8 HELIX 14 AB5 GLY B 96 LEU B 104 1 9 SHEET 1 AA1 7 LEU A 8 ALA A 9 0 SHEET 2 AA1 7 ALA A 107 ILE A 115 1 O ILE A 115 N LEU A 8 SHEET 3 AA1 7 ILE A 2 ILE A 5 1 N ILE A 2 O GLN A 108 SHEET 4 AA1 7 ILE A 91 VAL A 93 1 O VAL A 93 N SER A 3 SHEET 5 AA1 7 VAL A 40 GLY A 43 1 N ILE A 41 O MET A 92 SHEET 6 AA1 7 ASN A 59 LEU A 62 1 O ILE A 60 N VAL A 40 SHEET 7 AA1 7 THR A 73 VAL A 75 1 O VAL A 75 N ILE A 61 SHEET 1 AA2 4 LEU A 8 ALA A 9 0 SHEET 2 AA2 4 ALA A 107 ILE A 115 1 O ILE A 115 N LEU A 8 SHEET 3 AA2 4 TYR A 151 GLU A 157 -1 O CYS A 152 N HIS A 114 SHEET 4 AA2 4 GLU A 134 HIS A 141 -1 N GLU A 134 O GLU A 157 SHEET 1 AA3 2 VAL A 13 GLY A 15 0 SHEET 2 AA3 2 THR A 123 HIS A 124 -1 O THR A 123 N ILE A 14 SHEET 1 AA4 8 THR C 73 VAL C 75 0 SHEET 2 AA4 8 ASN C 59 LEU C 62 1 N ILE C 61 O THR C 73 SHEET 3 AA4 8 VAL C 40 GLY C 43 1 N MET C 42 O LEU C 62 SHEET 4 AA4 8 ILE C 91 VAL C 93 1 O MET C 92 N ILE C 41 SHEET 5 AA4 8 ILE C 2 LEU C 8 1 N SER C 3 O ILE C 91 SHEET 6 AA4 8 ALA C 107 ILE C 115 1 O TYR C 111 N LEU C 4 SHEET 7 AA4 8 TYR C 151 GLU C 157 -1 O CYS C 152 N HIS C 114 SHEET 8 AA4 8 GLU C 134 HIS C 141 -1 N GLU C 139 O PHE C 153 SHEET 1 AA5 2 VAL C 13 GLY C 15 0 SHEET 2 AA5 2 THR C 123 HIS C 124 -1 O THR C 123 N ILE C 14 SHEET 1 AA6 8 THR B 73 VAL B 75 0 SHEET 2 AA6 8 LYS B 58 LEU B 62 1 N ASN B 59 O THR B 73 SHEET 3 AA6 8 PRO B 39 GLY B 43 1 N MET B 42 O LEU B 62 SHEET 4 AA6 8 ILE B 91 VAL B 93 1 O MET B 92 N ILE B 41 SHEET 5 AA6 8 ILE B 2 ILE B 5 1 N SER B 3 O ILE B 91 SHEET 6 AA6 8 ALA B 107 ASP B 116 1 O TYR B 111 N LEU B 4 SHEET 7 AA6 8 SER B 150 GLU B 157 -1 O CYS B 152 N HIS B 114 SHEET 8 AA6 8 GLU B 134 HIS B 141 -1 N VAL B 136 O ILE B 155 SHEET 1 AA7 2 VAL B 13 GLY B 15 0 SHEET 2 AA7 2 THR B 123 HIS B 124 -1 O THR B 123 N ILE B 14 CISPEP 1 GLY A 95 GLY A 96 0 2.04 CISPEP 2 GLY C 95 GLY C 96 0 -4.28 CISPEP 3 GLY B 95 GLY B 96 0 -2.79 SITE 1 AC1 6 PRO A 130 ASP A 131 ASP A 132 TRP A 133 SITE 2 AC1 6 GLU A 134 ARG A 158 SITE 1 AC2 24 ALA A 7 ILE A 14 GLY A 15 ASN A 18 SITE 2 AC2 24 ALA A 19 MET A 20 GLY A 43 ARG A 44 SITE 3 AC2 24 HIS A 45 THR A 46 SER A 49 LEU A 62 SITE 4 AC2 24 SER A 63 SER A 64 LYS A 76 ILE A 94 SITE 5 AC2 24 GLY A 96 GLY A 97 ARG A 98 VAL A 99 SITE 6 AC2 24 TYR A 100 GLN A 102 THR A 123 TOP A 203 SITE 1 AC3 12 ILE A 5 ALA A 6 ALA A 7 MET A 20 SITE 2 AC3 12 ASP A 27 LEU A 28 PHE A 31 SER A 49 SITE 3 AC3 12 ILE A 94 TYR A 100 THR A 113 NAP A 202 SITE 1 AC4 6 LEU A 104 TYR A 128 GLU A 129 ASP A 132 SITE 2 AC4 6 TRP A 133 ARG A 158 SITE 1 AC5 5 LYS A 32 ARG A 52 LEU A 54 PRO A 55 SITE 2 AC5 5 ARG A 57 SITE 1 AC6 5 ASP C 131 ASP C 132 TRP C 133 GLU C 134 SITE 2 AC6 5 ARG C 158 SITE 1 AC7 23 ALA C 6 ALA C 7 ILE C 14 ASN C 18 SITE 2 AC7 23 ALA C 19 MET C 20 GLY C 43 ARG C 44 SITE 3 AC7 23 HIS C 45 THR C 46 LEU C 62 SER C 63 SITE 4 AC7 23 SER C 64 LYS C 76 ILE C 94 GLY C 96 SITE 5 AC7 23 GLY C 97 ARG C 98 VAL C 99 TYR C 100 SITE 6 AC7 23 GLN C 102 THR C 123 TOP C 203 SITE 1 AC8 11 ILE C 5 ALA C 6 MET C 20 ASP C 27 SITE 2 AC8 11 PHE C 31 SER C 49 ILE C 50 ILE C 94 SITE 3 AC8 11 TYR C 100 THR C 113 NAP C 202 SITE 1 AC9 5 LYS C 32 ARG C 52 LEU C 54 PRO C 55 SITE 2 AC9 5 ARG C 57 SITE 1 AD1 26 ALA B 7 ILE B 14 GLY B 15 MET B 16 SITE 2 AD1 26 ASN B 18 ALA B 19 MET B 20 GLY B 43 SITE 3 AD1 26 ARG B 44 HIS B 45 THR B 46 SER B 49 SITE 4 AD1 26 LEU B 62 SER B 63 SER B 64 LYS B 76 SITE 5 AD1 26 ILE B 94 GLY B 95 GLY B 96 GLY B 97 SITE 6 AD1 26 ARG B 98 VAL B 99 TYR B 100 GLN B 102 SITE 7 AD1 26 THR B 123 TOP B 202 SITE 1 AD2 12 ILE B 5 ALA B 6 MET B 20 ASP B 27 SITE 2 AD2 12 LEU B 28 PHE B 31 SER B 49 ILE B 50 SITE 3 AD2 12 ILE B 94 TYR B 100 THR B 113 NAP B 201 SITE 1 AD3 4 LYS B 32 ARG B 52 PRO B 55 ARG B 57 CRYST1 65.470 113.397 216.578 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015274 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004617 0.00000