HEADER IMMUNE SYSTEM 25-MAY-21 7N07 TITLE CRYSTAL STRUCTURE OF THE APO 3D6 ANTIBODY FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 3D6 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 3D6 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS ANTIBODY, FAB, ANTI-HIV, GP41, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.D.COOK,J.E.LEE REVDAT 3 18-OCT-23 7N07 1 REMARK REVDAT 2 13-APR-22 7N07 1 JRNL REVDAT 1 30-MAR-22 7N07 0 JRNL AUTH J.D.COOK,A.KHONDKER,J.E.LEE JRNL TITL CONFORMATIONAL PLASTICITY OF THE HIV-1 GP41 IMMUNODOMINANT JRNL TITL 2 REGION IS RECOGNIZED BY MULTIPLE NON-NEUTRALIZING JRNL TITL 3 ANTIBODIES. JRNL REF COMMUN BIOL V. 5 291 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35361878 JRNL DOI 10.1038/S42003-022-03235-W REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3381 ; 0.008 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 3079 ; 0.001 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4598 ; 1.342 ; 1.855 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7127 ; 0.972 ; 2.702 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;32.269 ;22.808 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;15.514 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.201 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3832 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 768 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 33 REMARK 3 ORIGIN FOR THE GROUP (A): 3.327 75.369 4.785 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.3193 REMARK 3 T33: 0.1036 T12: -0.0750 REMARK 3 T13: -0.0528 T23: 0.0671 REMARK 3 L TENSOR REMARK 3 L11: 3.7511 L22: 8.6150 REMARK 3 L33: 3.2424 L12: 3.3826 REMARK 3 L13: 1.1889 L23: 2.2726 REMARK 3 S TENSOR REMARK 3 S11: -0.3671 S12: 0.8208 S13: 0.2007 REMARK 3 S21: -0.8823 S22: 0.3652 S23: 0.2161 REMARK 3 S31: -0.2565 S32: -0.0081 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 34 H 75 REMARK 3 ORIGIN FOR THE GROUP (A): 2.121 73.258 14.675 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.1435 REMARK 3 T33: 0.0747 T12: 0.0091 REMARK 3 T13: -0.0137 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 6.2367 L22: 5.1849 REMARK 3 L33: 2.1929 L12: 1.3354 REMARK 3 L13: -0.1957 L23: -0.7482 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.0783 S13: 0.3566 REMARK 3 S21: 0.2538 S22: 0.0443 S23: 0.0041 REMARK 3 S31: 0.0189 S32: -0.0313 S33: -0.0754 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 112 H 145 REMARK 3 ORIGIN FOR THE GROUP (A): 31.337 91.999 -0.770 REMARK 3 T TENSOR REMARK 3 T11: 0.3633 T22: 0.3663 REMARK 3 T33: 0.2463 T12: -0.1537 REMARK 3 T13: 0.0098 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 12.2918 L22: 3.3735 REMARK 3 L33: 1.4804 L12: -2.7740 REMARK 3 L13: -3.7555 L23: 1.6122 REMARK 3 S TENSOR REMARK 3 S11: -0.1201 S12: 0.1507 S13: 0.9773 REMARK 3 S21: -0.7697 S22: 0.3967 S23: -0.3588 REMARK 3 S31: -0.1322 S32: 0.2320 S33: -0.2765 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 146 H 213 REMARK 3 ORIGIN FOR THE GROUP (A): 28.428 86.708 -3.589 REMARK 3 T TENSOR REMARK 3 T11: 0.3948 T22: 0.4216 REMARK 3 T33: 0.2561 T12: -0.1840 REMARK 3 T13: 0.0067 T23: 0.0603 REMARK 3 L TENSOR REMARK 3 L11: 7.9118 L22: 4.6561 REMARK 3 L33: 0.2857 L12: -2.3235 REMARK 3 L13: -1.2748 L23: 0.6446 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: 0.2324 S13: 0.2988 REMARK 3 S21: -0.9981 S22: 0.2244 S23: -0.0769 REMARK 3 S31: -0.0982 S32: 0.0948 S33: -0.1210 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 25 REMARK 3 ORIGIN FOR THE GROUP (A): 25.159 63.651 23.835 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.1974 REMARK 3 T33: 0.1268 T12: 0.0138 REMARK 3 T13: -0.0000 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 9.3892 L22: 3.3318 REMARK 3 L33: 4.8366 L12: -1.8099 REMARK 3 L13: -0.7130 L23: 0.1785 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.2252 S13: -0.0213 REMARK 3 S21: 0.2140 S22: -0.0333 S23: 0.3157 REMARK 3 S31: -0.1025 S32: -0.1298 S33: -0.0458 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 26 L 38 REMARK 3 ORIGIN FOR THE GROUP (A): 14.172 59.663 21.536 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.2248 REMARK 3 T33: 0.3157 T12: -0.0386 REMARK 3 T13: -0.0292 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 5.3567 L22: 4.7589 REMARK 3 L33: 13.5979 L12: 1.5367 REMARK 3 L13: -3.6476 L23: -5.8430 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: -0.2995 S13: -0.0443 REMARK 3 S21: -0.3810 S22: 0.3007 S23: 0.7407 REMARK 3 S31: 0.6639 S32: -0.4379 S33: -0.2767 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 39 L 69 REMARK 3 ORIGIN FOR THE GROUP (A): 19.886 58.820 12.671 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.2565 REMARK 3 T33: 0.2787 T12: 0.0036 REMARK 3 T13: -0.0442 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 6.1716 L22: 4.7089 REMARK 3 L33: 6.0145 L12: -1.5553 REMARK 3 L13: 3.3476 L23: -1.3702 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: 0.6048 S13: -0.2477 REMARK 3 S21: -0.6399 S22: -0.0327 S23: 0.2872 REMARK 3 S31: 0.6240 S32: 0.3557 S33: -0.1154 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 70 L 83 REMARK 3 ORIGIN FOR THE GROUP (A): 28.539 60.050 16.102 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.1977 REMARK 3 T33: 0.1729 T12: 0.0122 REMARK 3 T13: -0.0017 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 8.0262 L22: 4.8140 REMARK 3 L33: 11.1258 L12: 1.9446 REMARK 3 L13: -2.0750 L23: -6.4341 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: 0.5300 S13: -0.0753 REMARK 3 S21: -0.0785 S22: -0.0461 S23: 0.1089 REMARK 3 S31: 0.0994 S32: 0.2625 S33: -0.0881 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 84 L 99 REMARK 3 ORIGIN FOR THE GROUP (A): 14.607 65.681 19.736 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.3148 REMARK 3 T33: 0.2636 T12: -0.0602 REMARK 3 T13: -0.0350 T23: 0.1365 REMARK 3 L TENSOR REMARK 3 L11: 11.1461 L22: 2.2023 REMARK 3 L33: 7.2835 L12: -4.4973 REMARK 3 L13: -0.0509 L23: -0.7521 REMARK 3 S TENSOR REMARK 3 S11: -0.1578 S12: 0.0285 S13: -0.4066 REMARK 3 S21: 0.0483 S22: 0.2772 S23: 0.3702 REMARK 3 S31: 0.3351 S32: -0.8205 S33: -0.1195 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 100 L 111 REMARK 3 ORIGIN FOR THE GROUP (A): 38.879 70.769 14.381 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.9271 REMARK 3 T33: 0.5782 T12: -0.1058 REMARK 3 T13: -0.0154 T23: -0.0789 REMARK 3 L TENSOR REMARK 3 L11: 7.9046 L22: 5.5581 REMARK 3 L33: 3.6442 L12: 6.5632 REMARK 3 L13: -5.3652 L23: -4.4443 REMARK 3 S TENSOR REMARK 3 S11: 0.1492 S12: -0.0090 S13: 0.6270 REMARK 3 S21: 0.0926 S22: 0.2552 S23: 0.3494 REMARK 3 S31: -0.0962 S32: 0.0546 S33: -0.4044 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 112 L 148 REMARK 3 ORIGIN FOR THE GROUP (A): 39.650 91.713 6.281 REMARK 3 T TENSOR REMARK 3 T11: 0.1702 T22: 0.5065 REMARK 3 T33: 0.4684 T12: -0.1557 REMARK 3 T13: 0.1243 T23: -0.1595 REMARK 3 L TENSOR REMARK 3 L11: 5.2341 L22: 12.4779 REMARK 3 L33: 1.9747 L12: -2.7653 REMARK 3 L13: 0.3618 L23: -1.4643 REMARK 3 S TENSOR REMARK 3 S11: -0.1562 S12: -0.6073 S13: 1.1014 REMARK 3 S21: -0.3443 S22: 0.4952 S23: -0.9402 REMARK 3 S31: -0.4209 S32: 0.3079 S33: -0.3390 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 149 L 172 REMARK 3 ORIGIN FOR THE GROUP (A): 37.474 85.428 10.779 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.7602 REMARK 3 T33: 0.2529 T12: -0.0550 REMARK 3 T13: -0.0087 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 5.9254 L22: 9.7560 REMARK 3 L33: 1.8598 L12: -3.3282 REMARK 3 L13: -1.2034 L23: -2.8692 REMARK 3 S TENSOR REMARK 3 S11: -0.2877 S12: -0.8367 S13: 0.5194 REMARK 3 S21: -0.1245 S22: 0.6227 S23: 0.0521 REMARK 3 S31: 0.1383 S32: 0.0904 S33: -0.3349 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 173 L 209 REMARK 3 ORIGIN FOR THE GROUP (A): 43.948 95.632 8.398 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.6271 REMARK 3 T33: 0.8327 T12: -0.1674 REMARK 3 T13: 0.0034 T23: -0.2783 REMARK 3 L TENSOR REMARK 3 L11: 2.9737 L22: 13.0312 REMARK 3 L33: 3.0443 L12: -2.2775 REMARK 3 L13: -0.1544 L23: -1.5290 REMARK 3 S TENSOR REMARK 3 S11: -0.3686 S12: -0.3729 S13: 1.1873 REMARK 3 S21: 0.2042 S22: 0.3990 S23: -1.7700 REMARK 3 S31: -0.5035 S32: 0.4031 S33: -0.0305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 7N07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23589 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE, 25.5% (W/V) REMARK 280 PEG 4000, AND 15% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.51100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.21450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.21450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.76650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.21450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.21450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.25550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.21450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.21450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 120.76650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.21450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.21450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.25550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.51100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 ARG H 218 REMARK 465 LEU H 219 REMARK 465 VAL H 220 REMARK 465 PRO H 221 REMARK 465 ARG H 222 REMARK 465 GLY H 223 REMARK 465 SER H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS L 187 REMARK 465 LYS L 188 REMARK 465 GLY L 210 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 100 76.87 -101.61 REMARK 500 PHE H 100E 17.58 -140.53 REMARK 500 ASP H 144 64.71 61.93 REMARK 500 SER L 30 -129.98 54.56 REMARK 500 ALA L 51 -38.15 69.66 REMARK 500 ASN L 150 -18.13 76.11 REMARK 500 HIS L 196 138.83 -172.23 REMARK 500 GLN L 197 -19.55 -42.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N07 H 1 234 PDB 7N07 7N07 1 234 DBREF 7N07 L 1 212 PDB 7N07 7N07 1 212 SEQRES 1 H 247 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 247 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 247 PHE THR PHE ASN ASP TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 247 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE SER SEQRES 5 H 247 TRP ASP SER SER SER ILE GLY TYR ALA ASP SER VAL LYS SEQRES 6 H 247 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 247 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP MET SEQRES 8 H 247 ALA LEU TYR TYR CYS VAL LYS GLY ARG ASP TYR TYR ASP SEQRES 9 H 247 SER GLY GLY TYR PHE THR VAL ALA PHE ASP ILE TRP GLY SEQRES 10 H 247 GLN GLY THR MET VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 247 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 247 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 247 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 247 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 247 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 247 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 247 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 247 LYS LYS VAL GLU PRO LYS SER CYS GLY ARG LEU VAL PRO SEQRES 19 H 247 ARG GLY SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 L 212 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 L 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 212 GLN SER ILE SER ARG TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 212 PRO GLY LYS VAL PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 L 212 SER LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 212 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 212 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 212 ASN SER TYR SER PHE GLY PRO GLY THR LYS VAL ASP ILE SEQRES 9 L 212 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 10 L 212 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 11 L 212 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 12 L 212 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 13 L 212 SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER SEQRES 14 L 212 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 15 L 212 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 16 L 212 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 17 L 212 ARG GLY GLU CYS HET SO4 H 301 5 HET SO4 L 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *79(H2 O) HELIX 1 AA1 THR H 28 ASN H 30 5 3 HELIX 2 AA2 ASN H 73 LYS H 75 5 3 HELIX 3 AA3 ARG H 83 MET H 87 5 5 HELIX 4 AA4 SER H 127 LYS H 129 5 3 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 GLY H 190 5 4 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 GLN L 79 PHE L 83 5 5 HELIX 9 AA9 SER L 119 LYS L 124 1 6 HELIX 10 AB1 LYS L 181 GLU L 185 1 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 SER H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA2 6 ALA H 88 ASP H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 TYR H 32 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 AA2 6 ILE H 57 TYR H 59 -1 O GLY H 58 N GLY H 50 SHEET 1 AA3 4 SER H 120 LEU H 124 0 SHEET 2 AA3 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA3 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA3 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA4 4 THR H 131 SER H 132 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA5 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA6 4 MET L 4 SER L 7 0 SHEET 2 AA6 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA6 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA6 4 PHE L 62 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 AA7 6 THR L 10 SER L 14 0 SHEET 2 AA7 6 THR L 100 LYS L 105 1 O ASP L 103 N LEU L 11 SHEET 3 AA7 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 102 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA7 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA7 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA8 4 SER L 112 PHE L 116 0 SHEET 2 AA8 4 THR L 127 PHE L 137 -1 O LEU L 133 N PHE L 114 SHEET 3 AA8 4 TYR L 171 SER L 180 -1 O LEU L 173 N LEU L 134 SHEET 4 AA8 4 SER L 157 VAL L 161 -1 N GLN L 158 O THR L 176 SHEET 1 AA9 4 ALA L 151 LEU L 152 0 SHEET 2 AA9 4 LYS L 143 VAL L 148 -1 N VAL L 148 O ALA L 151 SHEET 3 AA9 4 TYR L 190 THR L 195 -1 O ALA L 191 N LYS L 147 SHEET 4 AA9 4 VAL L 203 PHE L 207 -1 O VAL L 203 N VAL L 194 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.06 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 4 CYS L 132 CYS L 192 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -8.93 CISPEP 2 GLU H 148 PRO H 149 0 -4.18 CISPEP 3 SER L 7 PRO L 8 0 -3.67 CISPEP 4 TYR L 138 PRO L 139 0 4.62 CRYST1 84.429 84.429 161.022 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011844 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006210 0.00000