HEADER VIRAL PROTEIN/IMMUNE SYSTEM 25-MAY-21 7N0R TITLE STRUCTURE OF THE SARS-COV-2 N PROTEIN RNA-BINDING DOMAIN BOUND TO TITLE 2 SINGLE-DOMAIN ANTIBODY C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RNA-BINDING DOMAIN; COMPND 5 SYNONYM: N,NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SINGLE-DOMAIN ANTIBODY C2; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, NANOBODY, NUCLEOCAPSID, VIRUS, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.YE,K.D.CORBETT REVDAT 4 18-OCT-23 7N0R 1 JRNL REVDAT 3 09-FEB-22 7N0R 1 JRNL REVDAT 2 01-DEC-21 7N0R 1 JRNL REVDAT 1 02-JUN-21 7N0R 0 JRNL AUTH Q.YE,S.LU,K.D.CORBETT JRNL TITL STRUCTURAL BASIS FOR SARS-COV-2 NUCLEOCAPSID PROTEIN JRNL TITL 2 RECOGNITION BY SINGLE-DOMAIN ANTIBODIES. JRNL REF FRONT IMMUNOL V. 12 19037 2021 JRNL REFN ESSN 1664-3224 JRNL PMID 34381460 JRNL DOI 10.3389/FIMMU.2021.719037 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.YE,S.LU,K.D.CORBETT REMARK 1 TITL STRUCTURAL BASIS FOR SARS-COV-2 NUCLEOCAPSID PROTEIN REMARK 1 TITL 2 RECOGNITION BY SINGLE-DOMAIN ANTIBODIES. REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 34100017 REMARK 1 DOI 10.1101/2021.06.01.446591 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 95049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 4628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.4900 - 4.4100 1.00 3105 185 0.1674 0.1855 REMARK 3 2 4.4100 - 3.5000 0.98 3009 168 0.1288 0.1478 REMARK 3 3 3.5000 - 3.0600 0.99 3089 137 0.1407 0.1445 REMARK 3 4 3.0600 - 2.7800 1.00 3004 175 0.1433 0.1622 REMARK 3 5 2.7800 - 2.5800 1.00 3031 137 0.1378 0.1674 REMARK 3 6 2.5800 - 2.4300 1.00 3091 150 0.1391 0.1585 REMARK 3 7 2.4200 - 2.3000 1.00 3040 158 0.1377 0.1518 REMARK 3 8 2.3000 - 2.2000 1.00 3034 148 0.1324 0.1598 REMARK 3 9 2.2000 - 2.1200 0.98 2992 154 0.1242 0.1629 REMARK 3 10 2.1200 - 2.0500 0.99 3003 161 0.1334 0.1657 REMARK 3 11 2.0500 - 1.9800 0.99 3041 142 0.1274 0.1476 REMARK 3 12 1.9800 - 1.9200 1.00 3016 173 0.1290 0.1525 REMARK 3 13 1.9200 - 1.8700 1.00 2997 151 0.1249 0.1589 REMARK 3 14 1.8700 - 1.8300 1.00 3089 145 0.1313 0.1714 REMARK 3 15 1.8300 - 1.7900 1.00 3014 138 0.1362 0.1816 REMARK 3 16 1.7900 - 1.7500 1.00 3046 143 0.1473 0.1861 REMARK 3 17 1.7500 - 1.7100 1.00 3036 153 0.1576 0.1937 REMARK 3 18 1.7100 - 1.6800 1.00 3008 159 0.1613 0.2072 REMARK 3 19 1.6800 - 1.6500 1.00 3056 142 0.1652 0.2420 REMARK 3 20 1.6500 - 1.6200 1.00 3080 161 0.1402 0.1700 REMARK 3 21 1.6200 - 1.6000 1.00 3004 139 0.1416 0.1833 REMARK 3 22 1.6000 - 1.5700 0.97 2965 142 0.1388 0.1752 REMARK 3 23 1.5700 - 1.5500 0.98 2931 150 0.1362 0.1780 REMARK 3 24 1.5500 - 1.5300 0.98 2992 175 0.1357 0.1758 REMARK 3 25 1.5300 - 1.5100 0.99 2938 152 0.1397 0.1836 REMARK 3 26 1.5100 - 1.4900 0.99 3042 179 0.1425 0.1854 REMARK 3 27 1.4900 - 1.4700 0.99 2958 159 0.1483 0.2009 REMARK 3 28 1.4700 - 1.4500 0.99 3023 150 0.1462 0.1696 REMARK 3 29 1.4500 - 1.4300 0.99 3025 158 0.1545 0.2321 REMARK 3 30 1.4300 - 1.4200 0.93 2762 144 0.1689 0.1981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3984 REMARK 3 ANGLE : 0.964 5417 REMARK 3 CHIRALITY : 0.077 558 REMARK 3 PLANARITY : 0.008 715 REMARK 3 DIHEDRAL : 11.838 1433 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 77.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 0.2 M LISO4, REMARK 280 AND 20% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 46 REMARK 465 ASN A 47 REMARK 465 SER B 46 REMARK 465 ASN B 47 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 ALA C 124 REMARK 465 LEU C 125 REMARK 465 GLU C 126 REMARK 465 HIS C 127 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 HIS C 132 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 ALA D 124 REMARK 465 LEU D 125 REMARK 465 GLU D 126 REMARK 465 HIS D 127 REMARK 465 HIS D 128 REMARK 465 HIS D 129 REMARK 465 HIS D 130 REMARK 465 HIS D 131 REMARK 465 HIS D 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY D 44 O HOH D 201 1.49 REMARK 500 HD22 ASN B 153 O HOH B 305 1.58 REMARK 500 O HOH A 412 O HOH A 444 1.92 REMARK 500 O HOH A 457 O HOH A 468 1.99 REMARK 500 O HOH B 458 O HOH B 460 1.99 REMARK 500 O TYR C 110 O HOH C 201 1.99 REMARK 500 O HOH A 435 O HOH A 476 2.02 REMARK 500 N GLY D 44 O HOH D 201 2.04 REMARK 500 O HOH A 348 O HOH A 443 2.05 REMARK 500 O HOH A 424 O HOH C 307 2.06 REMARK 500 O HOH B 423 O HOH B 463 2.06 REMARK 500 OE1 GLU D 106 O HOH D 202 2.10 REMARK 500 O HOH A 369 O HOH A 447 2.11 REMARK 500 O HOH A 366 O HOH A 477 2.12 REMARK 500 OD1 ASN D 77 O HOH D 203 2.16 REMARK 500 O HOH A 453 O HOH A 463 2.17 REMARK 500 O HOH B 441 O HOH B 476 2.18 REMARK 500 OD2 ASP B 98 O HOH B 301 2.19 REMARK 500 O HOH D 215 O HOH D 267 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H THR C 28 O3 SO4 A 201 1655 1.53 REMARK 500 O HOH C 289 O HOH D 209 1556 1.69 REMARK 500 O HOH B 423 O HOH D 341 1455 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 77 50.56 -90.42 REMARK 500 LYS A 143 55.12 -98.85 REMARK 500 ASN B 77 53.76 -92.58 REMARK 500 LYS B 143 59.02 -101.37 REMARK 500 ALA C 92 164.27 178.13 REMARK 500 HIS C 104 63.77 63.15 REMARK 500 ALA D 92 167.76 177.39 REMARK 500 HIS D 104 81.62 67.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 501 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 509 DISTANCE = 5.88 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7N0I RELATED DB: PDB REMARK 900 7N0I CONTAINS ANOTHER NUCLEOCAPSID-BOUND SINGLE-DOMAIN ANTIBODY DBREF 7N0R A 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7N0R B 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7N0R C -1 132 PDB 7N0R 7N0R -1 132 DBREF 7N0R D -1 132 PDB 7N0R 7N0R -1 132 SEQADV 7N0R SER A 46 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0R ASN A 47 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0R ALA A 48 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0R SER B 46 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0R ASN B 47 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0R ALA B 48 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 129 SER ASN ALA THR ALA SER TRP PHE THR ALA LEU THR GLN SEQRES 2 A 129 HIS GLY LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY SEQRES 3 A 129 VAL PRO ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE SEQRES 4 A 129 GLY TYR TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY SEQRES 5 A 129 ASP GLY LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE SEQRES 6 A 129 TYR TYR LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR SEQRES 7 A 129 GLY ALA ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU SEQRES 8 A 129 GLY ALA LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG SEQRES 9 A 129 ASN PRO ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO SEQRES 10 A 129 GLN GLY THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 B 129 SER ASN ALA THR ALA SER TRP PHE THR ALA LEU THR GLN SEQRES 2 B 129 HIS GLY LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY SEQRES 3 B 129 VAL PRO ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE SEQRES 4 B 129 GLY TYR TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY SEQRES 5 B 129 ASP GLY LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE SEQRES 6 B 129 TYR TYR LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR SEQRES 7 B 129 GLY ALA ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU SEQRES 8 B 129 GLY ALA LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG SEQRES 9 B 129 ASN PRO ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO SEQRES 10 B 129 GLN GLY THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 C 134 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 C 134 VAL ARG PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 C 134 SER GLY PHE THR PHE SER SER TYR ALA MET MET TRP VAL SEQRES 4 C 134 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA SEQRES 5 C 134 ILE ASN GLY GLY GLY GLY SER THR SER TYR ALA ASP SER SEQRES 6 C 134 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 7 C 134 ASN THR LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 C 134 ASP THR ALA VAL TYR TYR CYS ALA LYS TYR GLN ALA ALA SEQRES 9 C 134 VAL HIS GLN GLU LYS GLU ASP TYR TRP GLY GLN GLY THR SEQRES 10 C 134 GLN VAL THR VAL SER SER ALA ALA ALA LEU GLU HIS HIS SEQRES 11 C 134 HIS HIS HIS HIS SEQRES 1 D 134 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 D 134 VAL ARG PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 D 134 SER GLY PHE THR PHE SER SER TYR ALA MET MET TRP VAL SEQRES 4 D 134 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA SEQRES 5 D 134 ILE ASN GLY GLY GLY GLY SER THR SER TYR ALA ASP SER SEQRES 6 D 134 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 7 D 134 ASN THR LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 D 134 ASP THR ALA VAL TYR TYR CYS ALA LYS TYR GLN ALA ALA SEQRES 9 D 134 VAL HIS GLN GLU LYS GLU ASP TYR TRP GLY GLN GLY THR SEQRES 10 D 134 GLN VAL THR VAL SER SER ALA ALA ALA LEU GLU HIS HIS SEQRES 11 D 134 HIS HIS HIS HIS HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *689(H2 O) HELIX 1 AA1 SER A 79 ASP A 82 5 4 HELIX 2 AA2 SER B 79 ASP B 82 5 4 HELIX 3 AA3 THR B 115 ALA B 119 5 5 HELIX 4 AA4 THR C 28 TYR C 32 5 5 HELIX 5 AA5 ASN C 74 LYS C 76 5 3 HELIX 6 AA6 LYS C 87 THR C 91 5 5 HELIX 7 AA7 GLU C 108 GLY C 112 5 5 HELIX 8 AA8 THR D 28 TYR D 32 5 5 HELIX 9 AA9 ASN D 74 LYS D 76 5 3 HELIX 10 AB1 LYS D 87 THR D 91 5 5 HELIX 11 AB2 GLU D 108 GLY D 112 5 5 SHEET 1 AA1 4 LEU A 56 THR A 57 0 SHEET 2 AA1 4 ARG A 107 TYR A 112 -1 O TRP A 108 N LEU A 56 SHEET 3 AA1 4 ILE A 84 ALA A 90 -1 N TYR A 86 O TYR A 111 SHEET 4 AA1 4 ILE A 130 ALA A 134 -1 O VAL A 133 N GLY A 85 SHEET 1 AA2 2 ARG A 93 ARG A 95 0 SHEET 2 AA2 2 MET A 101 ASP A 103 -1 O LYS A 102 N ILE A 94 SHEET 1 AA3 4 LEU B 56 THR B 57 0 SHEET 2 AA3 4 ARG B 107 TYR B 112 -1 O TRP B 108 N LEU B 56 SHEET 3 AA3 4 ILE B 84 ALA B 90 -1 N TYR B 86 O TYR B 111 SHEET 4 AA3 4 ILE B 130 ALA B 134 -1 O VAL B 133 N GLY B 85 SHEET 1 AA4 2 ARG B 93 ARG B 95 0 SHEET 2 AA4 2 MET B 101 ASP B 103 -1 O LYS B 102 N ILE B 94 SHEET 1 AA5 4 GLN C 3 SER C 7 0 SHEET 2 AA5 4 LEU C 18 SER C 25 -1 O SER C 21 N SER C 7 SHEET 3 AA5 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AA5 4 PHE C 68 ASP C 73 -1 N THR C 69 O GLN C 82 SHEET 1 AA6 6 LEU C 11 VAL C 12 0 SHEET 2 AA6 6 THR C 115 VAL C 119 1 O THR C 118 N VAL C 12 SHEET 3 AA6 6 ALA C 92 LYS C 98 -1 N TYR C 94 O THR C 115 SHEET 4 AA6 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AA6 6 GLU C 46 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 AA6 6 THR C 58 TYR C 60 -1 O SER C 59 N ALA C 50 SHEET 1 AA7 4 GLN D 3 SER D 7 0 SHEET 2 AA7 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AA7 4 THR D 78 MET D 83 -1 O LEU D 81 N LEU D 20 SHEET 4 AA7 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AA8 6 LEU D 11 VAL D 12 0 SHEET 2 AA8 6 THR D 115 VAL D 119 1 O THR D 118 N VAL D 12 SHEET 3 AA8 6 ALA D 92 LYS D 98 -1 N TYR D 94 O THR D 115 SHEET 4 AA8 6 MET D 34 GLN D 39 -1 N MET D 35 O ALA D 97 SHEET 5 AA8 6 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA8 6 THR D 58 TYR D 60 -1 O SER D 59 N ALA D 50 SSBOND 1 CYS C 22 CYS C 96 1555 1555 2.00 SSBOND 2 CYS D 22 CYS D 96 1555 1555 2.01 CRYST1 46.668 77.120 71.932 90.00 95.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021428 0.000000 0.001927 0.00000 SCALE2 0.000000 0.012967 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013958 0.00000