HEADER VIRAL PROTEIN/IMMUNE SYSTEM 26-MAY-21 7N0S OBSLTE 07-JUL-21 7N0S 7R98 TITLE STRUCTURE OF THE SARS-COV-2 N PROTEIN RNA-BINDING DOMAIN BOUND TO TITLE 2 SINGLE-DOMAIN ANTIBODY B6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RNA-BINDING DOMAIN; COMPND 5 SYNONYM: N,NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SINGLE-DOMAIN ANTIBODY B6; COMPND 9 CHAIN: D, E, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, NANOBODY, NUCLEOCAPSID, VIRUS, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.D.CORBETT,Q.YE REVDAT 2 07-JUL-21 7N0S 1 OBSLTE REVDAT 1 09-JUN-21 7N0S 0 JRNL AUTH Q.YE,S.LU,K.D.CORBETT JRNL TITL STRUCTURE OF THE SARS-COV-2 N PROTEIN RNA-BINDING DOMAIN JRNL TITL 2 BOUND TO SINGLE-DOMAIN ANTIBODY B6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 29684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 86.4900 - 5.5200 0.98 3143 124 0.2159 0.2334 REMARK 3 2 5.5200 - 4.3800 0.99 3044 144 0.1894 0.1884 REMARK 3 3 4.3800 - 3.8300 0.99 2982 151 0.2001 0.2493 REMARK 3 4 3.8200 - 3.4800 1.00 3061 121 0.2330 0.3008 REMARK 3 5 3.4800 - 3.2300 1.00 2966 163 0.2516 0.2914 REMARK 3 6 3.2300 - 3.0400 1.00 3007 135 0.2678 0.3386 REMARK 3 7 3.0400 - 2.8800 1.00 3005 133 0.2996 0.3514 REMARK 3 8 2.8800 - 2.7600 1.00 2960 181 0.3423 0.3498 REMARK 3 9 2.7600 - 2.6500 0.99 2932 180 0.3798 0.3759 REMARK 3 10 2.6500 - 2.5600 0.40 1182 70 0.4118 0.4343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.452 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.922 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5745 REMARK 3 ANGLE : 0.706 7815 REMARK 3 CHIRALITY : 0.048 827 REMARK 3 PLANARITY : 0.006 1027 REMARK 3 DIHEDRAL : 11.158 2019 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 34.4034 -70.6579 0.5176 REMARK 3 T TENSOR REMARK 3 T11: 0.5260 T22: 0.3369 REMARK 3 T33: 0.5733 T12: -0.0809 REMARK 3 T13: -0.0055 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 5.9277 L22: 6.3545 REMARK 3 L33: 4.5624 L12: -1.1878 REMARK 3 L13: 0.3469 L23: 0.1132 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: -0.3504 S13: -0.9603 REMARK 3 S21: 0.5644 S22: -0.0530 S23: -0.4040 REMARK 3 S31: 0.7010 S32: 0.0140 S33: -0.0166 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 15.2293 -33.8830 1.0668 REMARK 3 T TENSOR REMARK 3 T11: 0.6409 T22: 1.3813 REMARK 3 T33: 1.1580 T12: 0.0257 REMARK 3 T13: -0.1761 T23: -0.4558 REMARK 3 L TENSOR REMARK 3 L11: 1.3888 L22: 1.5767 REMARK 3 L33: 4.6214 L12: -1.3826 REMARK 3 L13: -0.5938 L23: 0.9236 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: -2.0313 S13: 1.6154 REMARK 3 S21: 0.4001 S22: 0.2134 S23: -0.8280 REMARK 3 S31: -0.5492 S32: 0.4959 S33: 0.0176 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -6.6460 -68.6768 0.4560 REMARK 3 T TENSOR REMARK 3 T11: 1.1228 T22: 0.6353 REMARK 3 T33: 1.3194 T12: 0.1437 REMARK 3 T13: 0.3230 T23: 0.2442 REMARK 3 L TENSOR REMARK 3 L11: 3.2870 L22: 2.5051 REMARK 3 L33: 4.7155 L12: 0.5058 REMARK 3 L13: -0.2469 L23: -0.7711 REMARK 3 S TENSOR REMARK 3 S11: -0.3625 S12: -0.4683 S13: -0.7011 REMARK 3 S21: 1.2561 S22: 0.5057 S23: 1.3826 REMARK 3 S31: 0.1246 S32: -0.6699 S33: -0.2761 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 33.4346 -43.4662 -15.8235 REMARK 3 T TENSOR REMARK 3 T11: 0.5114 T22: 0.4065 REMARK 3 T33: 0.4627 T12: -0.0061 REMARK 3 T13: 0.0863 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 6.8156 L22: 7.0850 REMARK 3 L33: 5.0013 L12: 0.4572 REMARK 3 L13: -0.8648 L23: -1.0448 REMARK 3 S TENSOR REMARK 3 S11: 0.1451 S12: 0.6159 S13: 0.2476 REMARK 3 S21: -0.6794 S22: -0.1493 S23: -0.3805 REMARK 3 S31: -0.6072 S32: -0.0367 S33: 0.0736 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -7.8611 -47.9392 -15.4267 REMARK 3 T TENSOR REMARK 3 T11: 0.3743 T22: 0.4124 REMARK 3 T33: 0.3316 T12: -0.0416 REMARK 3 T13: 0.0378 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 6.8714 L22: 4.6005 REMARK 3 L33: 5.7404 L12: -0.8650 REMARK 3 L13: -0.6542 L23: -0.3461 REMARK 3 S TENSOR REMARK 3 S11: -0.2279 S12: 0.1174 S13: -0.4729 REMARK 3 S21: -0.0229 S22: 0.1492 S23: -0.0422 REMARK 3 S31: 0.7104 S32: -0.5726 S33: 0.0911 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 16.6058 -81.4475 -16.2217 REMARK 3 T TENSOR REMARK 3 T11: 0.7236 T22: 0.4979 REMARK 3 T33: 1.1877 T12: -0.0437 REMARK 3 T13: -0.0252 T23: -0.2507 REMARK 3 L TENSOR REMARK 3 L11: 4.8169 L22: 4.4622 REMARK 3 L33: 3.2389 L12: -0.6633 REMARK 3 L13: 0.0486 L23: -1.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.1113 S12: 0.7001 S13: -1.4642 REMARK 3 S21: -0.7022 S22: 0.1172 S23: 0.2281 REMARK 3 S31: 0.5037 S32: 0.3374 S33: 0.0604 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31608 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 112.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.25900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 3.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 0.1 M REMARK 280 SODIUM-POTASSIUM TARTRATE, AND 19% PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.18700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.18700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.93550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.49100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.93550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.49100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.18700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.93550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.49100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.18700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.93550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.49100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 46 REMARK 465 ASN A 47 REMARK 465 ILE A 94 REMARK 465 ARG A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 ASP A 98 REMARK 465 GLY A 99 REMARK 465 LYS A 100 REMARK 465 SER B 46 REMARK 465 ASN B 47 REMARK 465 ILE B 94 REMARK 465 ARG B 95 REMARK 465 GLY B 96 REMARK 465 GLY B 97 REMARK 465 ASP B 98 REMARK 465 GLY B 99 REMARK 465 LYS B 100 REMARK 465 MET B 101 REMARK 465 LYS B 102 REMARK 465 ASP B 103 REMARK 465 SER C 46 REMARK 465 ASN C 47 REMARK 465 ARG C 93 REMARK 465 ILE C 94 REMARK 465 ARG C 95 REMARK 465 GLY C 96 REMARK 465 GLY C 97 REMARK 465 ASP C 98 REMARK 465 GLY C 99 REMARK 465 LYS C 100 REMARK 465 MET C 101 REMARK 465 LYS C 102 REMARK 465 ASP C 103 REMARK 465 LEU C 104 REMARK 465 ALA D 128 REMARK 465 ALA D 129 REMARK 465 ALA D 130 REMARK 465 LEU D 131 REMARK 465 GLU D 132 REMARK 465 HIS D 133 REMARK 465 HIS D 134 REMARK 465 HIS D 135 REMARK 465 HIS D 136 REMARK 465 HIS D 137 REMARK 465 HIS D 138 REMARK 465 ALA E 129 REMARK 465 ALA E 130 REMARK 465 LEU E 131 REMARK 465 GLU E 132 REMARK 465 HIS E 133 REMARK 465 HIS E 134 REMARK 465 HIS E 135 REMARK 465 HIS E 136 REMARK 465 HIS E 137 REMARK 465 HIS E 138 REMARK 465 ALA F 129 REMARK 465 ALA F 130 REMARK 465 LEU F 131 REMARK 465 GLU F 132 REMARK 465 HIS F 133 REMARK 465 HIS F 134 REMARK 465 HIS F 135 REMARK 465 HIS F 136 REMARK 465 HIS F 137 REMARK 465 HIS F 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 MET A 101 CG SD CE REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 ARG C 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 174 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY E 100 O HOH E 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 11 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 118 47.51 -103.67 REMARK 500 LYS A 143 58.73 -92.10 REMARK 500 GLU B 118 47.19 -95.24 REMARK 500 GLU C 118 51.18 -94.21 REMARK 500 ILE D 106 -62.86 71.41 REMARK 500 PRO D 116 -162.66 -78.13 REMARK 500 ALA E 93 -179.09 -171.03 REMARK 500 ILE E 106 -62.06 72.66 REMARK 500 PRO E 116 -168.43 -79.62 REMARK 500 ALA F 93 -179.36 -176.53 REMARK 500 ILE F 106 -60.34 71.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7N0I RELATED DB: PDB REMARK 900 7N0I CONTAINS THE C-TERMINAL DOMAIN BOUND TO ANOTHER SINGLE-DOMAIN REMARK 900 ANTIBODY REMARK 900 RELATED ID: 7N0R RELATED DB: PDB REMARK 900 7N0I CONTAINS THE RNA-BINDING DOMAIN BOUND TO ANOTHER SINGLE-DOMAIN REMARK 900 ANTIBODY DBREF 7N0S A 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7N0S B 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7N0S C 49 174 UNP P0DTC9 NCAP_SARS2 49 174 DBREF 7N0S D -1 138 PDB 7N0S 7N0S -1 138 DBREF 7N0S E -1 138 PDB 7N0S 7N0S -1 138 DBREF 7N0S F -1 138 PDB 7N0S 7N0S -1 138 SEQADV 7N0S SER A 46 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S ASN A 47 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S ALA A 48 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S SER B 46 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S ASN B 47 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S ALA B 48 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S SER C 46 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S ASN C 47 UNP P0DTC9 EXPRESSION TAG SEQADV 7N0S ALA C 48 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 129 SER ASN ALA THR ALA SER TRP PHE THR ALA LEU THR GLN SEQRES 2 A 129 HIS GLY LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY SEQRES 3 A 129 VAL PRO ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE SEQRES 4 A 129 GLY TYR TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY SEQRES 5 A 129 ASP GLY LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE SEQRES 6 A 129 TYR TYR LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR SEQRES 7 A 129 GLY ALA ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU SEQRES 8 A 129 GLY ALA LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG SEQRES 9 A 129 ASN PRO ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO SEQRES 10 A 129 GLN GLY THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 B 129 SER ASN ALA THR ALA SER TRP PHE THR ALA LEU THR GLN SEQRES 2 B 129 HIS GLY LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY SEQRES 3 B 129 VAL PRO ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE SEQRES 4 B 129 GLY TYR TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY SEQRES 5 B 129 ASP GLY LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE SEQRES 6 B 129 TYR TYR LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR SEQRES 7 B 129 GLY ALA ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU SEQRES 8 B 129 GLY ALA LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG SEQRES 9 B 129 ASN PRO ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO SEQRES 10 B 129 GLN GLY THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 C 129 SER ASN ALA THR ALA SER TRP PHE THR ALA LEU THR GLN SEQRES 2 C 129 HIS GLY LYS GLU ASP LEU LYS PHE PRO ARG GLY GLN GLY SEQRES 3 C 129 VAL PRO ILE ASN THR ASN SER SER PRO ASP ASP GLN ILE SEQRES 4 C 129 GLY TYR TYR ARG ARG ALA THR ARG ARG ILE ARG GLY GLY SEQRES 5 C 129 ASP GLY LYS MET LYS ASP LEU SER PRO ARG TRP TYR PHE SEQRES 6 C 129 TYR TYR LEU GLY THR GLY PRO GLU ALA GLY LEU PRO TYR SEQRES 7 C 129 GLY ALA ASN LYS ASP GLY ILE ILE TRP VAL ALA THR GLU SEQRES 8 C 129 GLY ALA LEU ASN THR PRO LYS ASP HIS ILE GLY THR ARG SEQRES 9 C 129 ASN PRO ALA ASN ASN ALA ALA ILE VAL LEU GLN LEU PRO SEQRES 10 C 129 GLN GLY THR THR LEU PRO LYS GLY PHE TYR ALA GLU SEQRES 1 D 140 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 D 140 VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS VAL ALA SEQRES 3 D 140 VAL SER GLY ARG THR ILE SER THR PHE ALA MET GLY TRP SEQRES 4 D 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 D 140 THR ILE ASN TRP SER GLY SER SER ALA ARG TYR ALA ASP SEQRES 6 D 140 PRO VAL GLU GLY ARG PHE THR ILE SER ARG ASP ASP ALA SEQRES 7 D 140 LYS ASN THR VAL TYR LEU GLU MET SER SER LEU LYS PRO SEQRES 8 D 140 GLY ASP SER ALA VAL TYR TYR CYS ALA SER GLY ARG TYR SEQRES 9 D 140 LEU GLY GLY ILE THR SER TYR SER GLN GLY ASP PHE ALA SEQRES 10 D 140 PRO TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ALA SEQRES 11 D 140 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 140 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 E 140 VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS VAL ALA SEQRES 3 E 140 VAL SER GLY ARG THR ILE SER THR PHE ALA MET GLY TRP SEQRES 4 E 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 E 140 THR ILE ASN TRP SER GLY SER SER ALA ARG TYR ALA ASP SEQRES 6 E 140 PRO VAL GLU GLY ARG PHE THR ILE SER ARG ASP ASP ALA SEQRES 7 E 140 LYS ASN THR VAL TYR LEU GLU MET SER SER LEU LYS PRO SEQRES 8 E 140 GLY ASP SER ALA VAL TYR TYR CYS ALA SER GLY ARG TYR SEQRES 9 E 140 LEU GLY GLY ILE THR SER TYR SER GLN GLY ASP PHE ALA SEQRES 10 E 140 PRO TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ALA SEQRES 11 E 140 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 F 140 MET ALA GLU VAL GLN LEU GLN ALA SER GLY GLY GLY LEU SEQRES 2 F 140 VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS VAL ALA SEQRES 3 F 140 VAL SER GLY ARG THR ILE SER THR PHE ALA MET GLY TRP SEQRES 4 F 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 F 140 THR ILE ASN TRP SER GLY SER SER ALA ARG TYR ALA ASP SEQRES 6 F 140 PRO VAL GLU GLY ARG PHE THR ILE SER ARG ASP ASP ALA SEQRES 7 F 140 LYS ASN THR VAL TYR LEU GLU MET SER SER LEU LYS PRO SEQRES 8 F 140 GLY ASP SER ALA VAL TYR TYR CYS ALA SER GLY ARG TYR SEQRES 9 F 140 LEU GLY GLY ILE THR SER TYR SER GLN GLY ASP PHE ALA SEQRES 10 F 140 PRO TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ALA SEQRES 11 F 140 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 7 HOH *42(H2 O) HELIX 1 AA1 SER A 79 ASP A 82 5 4 HELIX 2 AA2 SER B 79 ASP B 82 5 4 HELIX 3 AA3 SER C 79 ASP C 82 5 4 HELIX 4 AA4 LYS D 88 SER D 92 5 5 HELIX 5 AA5 SER D 110 PHE D 114 5 5 HELIX 6 AA6 LYS E 88 SER E 92 5 5 HELIX 7 AA7 SER E 110 PHE E 114 5 5 HELIX 8 AA8 ASP F 75 LYS F 77 5 3 HELIX 9 AA9 LYS F 88 SER F 92 5 5 HELIX 10 AB1 SER F 110 GLY F 112 5 3 SHEET 1 AA1 4 LEU A 56 THR A 57 0 SHEET 2 AA1 4 ARG A 107 TYR A 112 -1 O TRP A 108 N LEU A 56 SHEET 3 AA1 4 ILE A 84 ALA A 90 -1 N TYR A 86 O TYR A 111 SHEET 4 AA1 4 ILE A 130 ALA A 134 -1 O ILE A 131 N TYR A 87 SHEET 1 AA2 4 LEU B 56 THR B 57 0 SHEET 2 AA2 4 ARG B 107 TYR B 112 -1 O TRP B 108 N LEU B 56 SHEET 3 AA2 4 ILE B 84 ALA B 90 -1 N ALA B 90 O ARG B 107 SHEET 4 AA2 4 ILE B 130 ALA B 134 -1 O VAL B 133 N GLY B 85 SHEET 1 AA3 4 LEU C 56 THR C 57 0 SHEET 2 AA3 4 ARG C 107 TYR C 112 -1 O TRP C 108 N LEU C 56 SHEET 3 AA3 4 ILE C 84 ALA C 90 -1 N ARG C 88 O TYR C 109 SHEET 4 AA3 4 ILE C 130 ALA C 134 -1 O ILE C 131 N TYR C 87 SHEET 1 AA4 4 LEU D 4 SER D 7 0 SHEET 2 AA4 4 LEU D 18 ALA D 24 -1 O VAL D 23 N GLN D 5 SHEET 3 AA4 4 THR D 79 MET D 84 -1 O MET D 84 N LEU D 18 SHEET 4 AA4 4 PHE D 69 ASP D 74 -1 N THR D 70 O GLU D 83 SHEET 1 AA5 6 LEU D 11 GLN D 13 0 SHEET 2 AA5 6 THR D 121 SER D 126 1 O THR D 124 N VAL D 12 SHEET 3 AA5 6 ALA D 93 TYR D 102 -1 N TYR D 95 O THR D 121 SHEET 4 AA5 6 PHE D 33 GLN D 40 -1 N PHE D 38 O TYR D 96 SHEET 5 AA5 6 ARG D 46 ILE D 52 -1 O ILE D 52 N MET D 35 SHEET 6 AA5 6 ALA D 59 TYR D 61 -1 O ARG D 60 N THR D 51 SHEET 1 AA6 4 LEU E 4 SER E 7 0 SHEET 2 AA6 4 LEU E 18 ALA E 24 -1 O VAL E 23 N GLN E 5 SHEET 3 AA6 4 THR E 79 MET E 84 -1 O MET E 84 N LEU E 18 SHEET 4 AA6 4 PHE E 69 ASP E 74 -1 N THR E 70 O GLU E 83 SHEET 1 AA7 6 LEU E 11 GLN E 13 0 SHEET 2 AA7 6 THR E 121 SER E 126 1 O THR E 124 N VAL E 12 SHEET 3 AA7 6 ALA E 93 TYR E 102 -1 N TYR E 95 O THR E 121 SHEET 4 AA7 6 PHE E 33 GLN E 40 -1 N ALA E 34 O GLY E 100 SHEET 5 AA7 6 ARG E 46 ILE E 52 -1 O ILE E 52 N MET E 35 SHEET 6 AA7 6 ALA E 59 TYR E 61 -1 O ARG E 60 N THR E 51 SHEET 1 AA8 4 LEU F 4 SER F 7 0 SHEET 2 AA8 4 LEU F 18 ALA F 24 -1 O VAL F 23 N GLN F 5 SHEET 3 AA8 4 THR F 79 MET F 84 -1 O MET F 84 N LEU F 18 SHEET 4 AA8 4 PHE F 69 ASP F 74 -1 N THR F 70 O GLU F 83 SHEET 1 AA9 6 LEU F 11 GLN F 13 0 SHEET 2 AA9 6 THR F 121 SER F 126 1 O THR F 124 N VAL F 12 SHEET 3 AA9 6 ALA F 93 TYR F 102 -1 N TYR F 95 O THR F 121 SHEET 4 AA9 6 PHE F 33 GLN F 40 -1 N PHE F 38 O TYR F 96 SHEET 5 AA9 6 ARG F 46 ILE F 52 -1 O ILE F 52 N MET F 35 SHEET 6 AA9 6 ALA F 59 TYR F 61 -1 O ARG F 60 N THR F 51 SHEET 1 AB1 4 LEU F 11 GLN F 13 0 SHEET 2 AB1 4 THR F 121 SER F 126 1 O THR F 124 N VAL F 12 SHEET 3 AB1 4 ALA F 93 TYR F 102 -1 N TYR F 95 O THR F 121 SHEET 4 AB1 4 PHE F 114 TRP F 117 -1 O ALA F 115 N SER F 99 SSBOND 1 CYS D 22 CYS D 97 1555 1555 2.03 SSBOND 2 CYS E 22 CYS E 97 1555 1555 2.03 SSBOND 3 CYS F 22 CYS F 97 1555 1555 2.03 CISPEP 1 ALA D 115 PRO D 116 0 -0.30 CISPEP 2 ALA E 115 PRO E 116 0 -0.48 CISPEP 3 ALA F 115 PRO F 116 0 -0.68 CRYST1 99.871 172.982 112.374 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008899 0.00000