HEADER IMMUNE SYSTEM 01-JUN-21 7N3E TITLE CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY TITLE 2 FAB FRAGMENT C032 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C032 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C032 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS-2, SPIKE PROTEIN, KEYWDS 2 NEUTRALIZING ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.I.FLYAK,P.J.BJORKMAN,C.O.BARNES REVDAT 4 18-OCT-23 7N3E 1 JRNL REVDAT 3 25-AUG-21 7N3E 1 JRNL REVDAT 2 11-AUG-21 7N3E 1 JRNL REVDAT 1 04-AUG-21 7N3E 0 JRNL AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, JRNL AUTH 2 D.SCHAEFER-BABAJEW,Z.WANG,J.C.C LORENZI,A.I.FLYAK, JRNL AUTH 3 A.T.DELAITSCH,K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER, JRNL AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, JRNL AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, JRNL AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ JRNL TITL AFFINITY MATURATION OF SARS-COV-2 NEUTRALIZING ANTIBODIES JRNL TITL 2 CONFERS POTENCY, BREADTH, AND RESILIENCE TO VIRAL ESCAPE JRNL TITL 3 MUTATIONS. JRNL REF IMMUNITY V. 54 1853 2021 JRNL REFN ISSN 1074-7613 JRNL PMID 34331873 JRNL DOI 10.1016/J.IMMUNI.2021.07.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, REMARK 1 AUTH 2 D.SCHAEFER-BABAJEW,J.C.C.LORENZI,A.I.FLYAK,A.T.DELAITSCH, REMARK 1 AUTH 3 K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER,Z.WANG, REMARK 1 AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, REMARK 1 AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, REMARK 1 AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ REMARK 1 TITL DEVELOPMENT OF POTENCY, BREADTH AND RESILIENCE TO VIRAL REMARK 1 TITL 2 ESCAPE MUTATIONS IN SARS-COV-2 NEUTRALIZING ANTIBODIES REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 33758864 REMARK 1 DOI 10.1101/2021.03.07.434227 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 32824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9400 - 4.7200 0.93 2663 134 0.1662 0.1977 REMARK 3 2 4.7100 - 3.7400 0.97 2698 155 0.1577 0.1700 REMARK 3 3 3.7400 - 3.2700 0.92 2526 140 0.1802 0.2092 REMARK 3 4 3.2700 - 2.9700 0.96 2655 130 0.2034 0.2471 REMARK 3 5 2.9700 - 2.7600 0.93 2562 131 0.2287 0.3049 REMARK 3 6 2.7600 - 2.6000 0.93 2565 123 0.2408 0.2949 REMARK 3 7 2.6000 - 2.4700 0.96 2609 133 0.2429 0.2864 REMARK 3 8 2.4700 - 2.3600 0.97 2701 124 0.2598 0.3076 REMARK 3 9 2.3600 - 2.2700 0.91 2477 134 0.2684 0.2769 REMARK 3 10 2.2700 - 2.1900 0.93 2542 135 0.2962 0.2978 REMARK 3 11 2.1900 - 2.1200 0.95 2598 146 0.3016 0.3391 REMARK 3 12 2.1200 - 2.0600 0.96 2607 136 0.3354 0.3339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3328 REMARK 3 ANGLE : 1.072 4543 REMARK 3 CHIRALITY : 0.062 513 REMARK 3 PLANARITY : 0.007 576 REMARK 3 DIHEDRAL : 13.477 463 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.961 -21.496 26.887 REMARK 3 T TENSOR REMARK 3 T11: 0.3384 T22: 0.2473 REMARK 3 T33: 0.5952 T12: -0.0241 REMARK 3 T13: 0.0757 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.0009 L22: 0.9272 REMARK 3 L33: 1.6564 L12: -0.6535 REMARK 3 L13: 0.2208 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: 0.1112 S13: -0.0174 REMARK 3 S21: -0.0368 S22: -0.0767 S23: 0.0647 REMARK 3 S31: -0.0134 S32: -0.0933 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 120:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.773 -21.439 22.795 REMARK 3 T TENSOR REMARK 3 T11: 0.4170 T22: 0.3444 REMARK 3 T33: 0.2958 T12: 0.0306 REMARK 3 T13: 0.0307 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 1.7144 L22: 1.3648 REMARK 3 L33: 1.1492 L12: -0.0557 REMARK 3 L13: -0.4622 L23: 0.5253 REMARK 3 S TENSOR REMARK 3 S11: 0.2271 S12: 0.2364 S13: 0.1788 REMARK 3 S21: -0.1457 S22: 0.0544 S23: -0.1248 REMARK 3 S31: -0.3890 S32: -0.1422 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 3:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.269 -20.034 5.066 REMARK 3 T TENSOR REMARK 3 T11: 0.6244 T22: 0.9038 REMARK 3 T33: 0.6167 T12: 0.0798 REMARK 3 T13: 0.0201 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.3232 L22: 1.6035 REMARK 3 L33: 1.6174 L12: -1.0595 REMARK 3 L13: -0.3538 L23: -0.2352 REMARK 3 S TENSOR REMARK 3 S11: 0.2810 S12: 1.1893 S13: 0.1446 REMARK 3 S21: -0.2878 S22: -0.0784 S23: 0.1970 REMARK 3 S31: -0.0554 S32: -0.2448 S33: 0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 113:216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.124 -33.026 11.735 REMARK 3 T TENSOR REMARK 3 T11: 0.3603 T22: 0.5107 REMARK 3 T33: 0.2548 T12: 0.0122 REMARK 3 T13: -0.0490 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.9369 L22: 1.5299 REMARK 3 L33: 2.9849 L12: 0.3054 REMARK 3 L13: 0.6365 L23: -0.7425 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: 0.3790 S13: -0.1373 REMARK 3 S21: -0.0324 S22: 0.1587 S23: -0.0454 REMARK 3 S31: 0.1490 S32: -0.1280 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000255107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32883 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 68.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MEG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.7, 58% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.92500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.92500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 CYS L 218 REMARK 465 SER L 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS L 117 O HOH L 301 1.90 REMARK 500 OE1 GLN H 39 O HOH H 301 2.01 REMARK 500 O HOH H 347 O HOH H 365 2.03 REMARK 500 O GLY L 206 O HOH L 302 2.04 REMARK 500 OG SER H 173 O HOH H 302 2.07 REMARK 500 O ARG H 210 O HOH H 303 2.08 REMARK 500 NH1 ARG L 57 OD1 ASP L 63 2.12 REMARK 500 O PRO L 116 O HOH L 303 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 140 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 43 -165.80 -116.80 REMARK 500 VAL H 98 -56.52 68.97 REMARK 500 SER L 26 -166.20 -100.83 REMARK 500 ASN L 29 -84.24 -125.17 REMARK 500 ASN L 54 -44.59 65.29 REMARK 500 LEU L 81 131.78 -36.47 REMARK 500 GLN L 82 -168.88 -123.23 REMARK 500 SER L 93 -156.12 -155.65 REMARK 500 ASN L 135 31.54 71.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 395 DISTANCE = 6.05 ANGSTROMS DBREF 7N3E H 1 225 PDB 7N3E 7N3E 1 225 DBREF 7N3E L 1 219 PDB 7N3E 7N3E 1 219 SEQRES 1 H 231 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 231 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 231 TYR SER PHE THR SER TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 231 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE TYR SEQRES 5 H 231 PRO GLY ASP SER ASP THR ARG TYR SER PRO SER PHE GLN SEQRES 6 H 231 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE SER THR SEQRES 7 H 231 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 231 ALA MET TYR TYR CYS ALA ARG GLY VAL ALA VAL ASP TRP SEQRES 9 H 231 TYR PHE ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SEQRES 10 H 231 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 231 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 231 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 231 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 231 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 231 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 231 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 231 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 18 H 231 CYS ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 218 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER GLY ALA SEQRES 2 L 218 PRO GLY GLN ARG VAL THR ILE SER CYS THR GLY SER SER SEQRES 3 L 218 SER ASN ILE GLY ALA GLY TYR ASP VAL HIS TRP TYR GLN SEQRES 4 L 218 GLN LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLY SEQRES 5 L 218 ASN SER ASN ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 218 GLY SER LYS SER GLY THR SER ALA SER LEU ALA ILE THR SEQRES 7 L 218 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SEQRES 8 L 218 SER TYR ASP SER SER LEU SER ALA LEU TYR VAL PHE GLY SEQRES 9 L 218 THR GLY THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 L 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 L 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 L 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 L 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 L 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 L 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SEQRES 16 L 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 L 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER FORMUL 3 HOH *132(H2 O) HELIX 1 AA1 SER H 28 TYR H 32 5 5 HELIX 2 AA2 LYS H 73 ILE H 75 5 3 HELIX 3 AA3 LYS H 83 THR H 87 5 5 HELIX 4 AA4 SER H 127 LYS H 129 5 3 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 ASN L 29 GLY L 33 5 5 HELIX 9 AA9 GLN L 82 GLU L 86 5 5 HELIX 10 AB1 SER L 128 ALA L 134 1 7 HELIX 11 AB2 THR L 188 SER L 194 1 7 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 TRP H 82 -1 O LEU H 80 N ILE H 20 SHEET 4 AA1 4 THR H 68 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA2 6 ALA H 88 VAL H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N GLY H 35 O ALA H 93 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ARG H 58 N ILE H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA3 4 ALA H 88 VAL H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 TYR H 100A TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 HIS H 164 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 SER L 9 GLY L 13 0 SHEET 2 AA7 5 THR L 108 VAL L 112 1 O LYS L 109 N VAL L 11 SHEET 3 AA7 5 ALA L 87 ASP L 95 -1 N ALA L 87 O VAL L 110 SHEET 4 AA7 5 HIS L 37 GLN L 41 -1 N HIS L 37 O GLN L 92 SHEET 5 AA7 5 LYS L 48 ILE L 51 -1 O LEU L 50 N TRP L 38 SHEET 1 AA8 4 SER L 9 GLY L 13 0 SHEET 2 AA8 4 THR L 108 VAL L 112 1 O LYS L 109 N VAL L 11 SHEET 3 AA8 4 ALA L 87 ASP L 95 -1 N ALA L 87 O VAL L 110 SHEET 4 AA8 4 ALA L 100 PHE L 104 -1 O VAL L 103 N SER L 93 SHEET 1 AA9 3 ARG L 18 THR L 24 0 SHEET 2 AA9 3 SER L 73 THR L 79 -1 O ALA L 74 N CYS L 23 SHEET 3 AA9 3 PHE L 65 SER L 70 -1 N SER L 66 O ALA L 77 SHEET 1 AB1 4 SER L 121 PHE L 125 0 SHEET 2 AB1 4 ALA L 137 PHE L 146 -1 O SER L 144 N SER L 121 SHEET 3 AB1 4 TYR L 179 LEU L 187 -1 O LEU L 187 N ALA L 137 SHEET 4 AB1 4 VAL L 166 THR L 168 -1 N GLU L 167 O TYR L 184 SHEET 1 AB2 4 SER L 121 PHE L 125 0 SHEET 2 AB2 4 ALA L 137 PHE L 146 -1 O SER L 144 N SER L 121 SHEET 3 AB2 4 TYR L 179 LEU L 187 -1 O LEU L 187 N ALA L 137 SHEET 4 AB2 4 SER L 172 LYS L 173 -1 N SER L 172 O ALA L 180 SHEET 1 AB3 4 SER L 160 VAL L 162 0 SHEET 2 AB3 4 THR L 152 ALA L 157 -1 N ALA L 157 O SER L 160 SHEET 3 AB3 4 TYR L 198 HIS L 204 -1 O GLN L 201 N ALA L 154 SHEET 4 AB3 4 SER L 207 VAL L 213 -1 O VAL L 209 N VAL L 202 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.02 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.07 SSBOND 3 CYS L 23 CYS L 91 1555 1555 2.05 SSBOND 4 CYS L 141 CYS L 200 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -8.48 CISPEP 2 GLU H 148 PRO H 149 0 15.28 CISPEP 3 TYR L 147 PRO L 148 0 3.60 CRYST1 133.850 61.690 69.230 90.00 97.33 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007471 0.000000 0.000961 0.00000 SCALE2 0.000000 0.016210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014564 0.00000