HEADER IMMUNE SYSTEM 01-JUN-21 7N3F TITLE CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY TITLE 2 FAB FRAGMENT C080 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C080 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C080 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS-2, SPIKE PROTEIN, KEYWDS 2 NEUTRALIZING ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.I.FLYAK,P.J.BJORKMAN,C.O.BARNES REVDAT 4 18-OCT-23 7N3F 1 JRNL REVDAT 3 25-AUG-21 7N3F 1 JRNL REVDAT 2 11-AUG-21 7N3F 1 JRNL REVDAT 1 04-AUG-21 7N3F 0 JRNL AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, JRNL AUTH 2 D.SCHAEFER-BABAJEW,Z.WANG,J.C.C LORENZI,A.I.FLYAK, JRNL AUTH 3 A.T.DELAITSCH,K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER, JRNL AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, JRNL AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, JRNL AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ JRNL TITL AFFINITY MATURATION OF SARS-COV-2 NEUTRALIZING ANTIBODIES JRNL TITL 2 CONFERS POTENCY, BREADTH, AND RESILIENCE TO VIRAL ESCAPE JRNL TITL 3 MUTATIONS. JRNL REF IMMUNITY V. 54 1853 2021 JRNL REFN ISSN 1074-7613 JRNL PMID 34331873 JRNL DOI 10.1016/J.IMMUNI.2021.07.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, REMARK 1 AUTH 2 D.SCHAEFER-BABAJEW,J.C.C.LORENZI,A.I.FLYAK,A.T.DELAITSCH, REMARK 1 AUTH 3 K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER,Z.WANG, REMARK 1 AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, REMARK 1 AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, REMARK 1 AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ REMARK 1 TITL DEVELOPMENT OF POTENCY, BREADTH AND RESILIENCE TO VIRAL REMARK 1 TITL 2 ESCAPE MUTATIONS IN SARS-COV-2 NEUTRALIZING ANTIBODIES REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 33758864 REMARK 1 DOI 10.1101/2021.03.07.434227 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6100 - 4.6800 0.99 2818 123 0.1775 0.1988 REMARK 3 2 4.6800 - 3.7200 0.99 2676 146 0.1482 0.1638 REMARK 3 3 3.7200 - 3.2500 1.00 2647 139 0.1705 0.2234 REMARK 3 4 3.2500 - 2.9500 0.99 2597 157 0.1816 0.1904 REMARK 3 5 2.9500 - 2.7400 0.99 2635 140 0.1881 0.2398 REMARK 3 6 2.7400 - 2.5800 1.00 2606 123 0.1969 0.2609 REMARK 3 7 2.5800 - 2.4500 0.99 2575 147 0.2030 0.2523 REMARK 3 8 2.4500 - 2.3400 0.99 2585 114 0.1948 0.2436 REMARK 3 9 2.3400 - 2.2500 0.99 2590 131 0.1888 0.2477 REMARK 3 10 2.2500 - 2.1700 0.99 2572 144 0.1924 0.2174 REMARK 3 11 2.1700 - 2.1100 1.00 2579 148 0.2032 0.2368 REMARK 3 12 2.1100 - 2.0500 0.99 2563 137 0.2212 0.2654 REMARK 3 13 2.0500 - 1.9900 0.97 2540 132 0.2337 0.2702 REMARK 3 14 1.9900 - 1.9400 0.98 2537 140 0.2453 0.2946 REMARK 3 15 1.9400 - 1.9000 0.97 2509 127 0.2817 0.3410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3349 REMARK 3 ANGLE : 1.117 4574 REMARK 3 CHIRALITY : 0.067 519 REMARK 3 PLANARITY : 0.008 582 REMARK 3 DIHEDRAL : 15.786 1181 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.852 22.280 -71.115 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.2792 REMARK 3 T33: 0.2068 T12: -0.0195 REMARK 3 T13: -0.0269 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.7438 L22: 4.0278 REMARK 3 L33: 5.1974 L12: 0.5786 REMARK 3 L13: 1.0112 L23: 2.3060 REMARK 3 S TENSOR REMARK 3 S11: -0.1724 S12: 0.2283 S13: 0.1991 REMARK 3 S21: -0.1272 S22: 0.1758 S23: 0.1314 REMARK 3 S31: -0.1056 S32: 0.3491 S33: 0.0069 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 120:215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.553 16.404 -34.395 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.1415 REMARK 3 T33: 0.1628 T12: 0.0095 REMARK 3 T13: 0.0358 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.6086 L22: 2.9273 REMARK 3 L33: 2.4190 L12: -0.0911 REMARK 3 L13: 0.7836 L23: -0.9932 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.1320 S13: -0.0721 REMARK 3 S21: 0.0174 S22: -0.0320 S23: -0.1517 REMARK 3 S31: 0.0453 S32: 0.0501 S33: 0.0326 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.311 0.739 -69.882 REMARK 3 T TENSOR REMARK 3 T11: 0.1936 T22: 0.1712 REMARK 3 T33: 0.1337 T12: 0.0341 REMARK 3 T13: -0.0053 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 3.0667 L22: 3.1203 REMARK 3 L33: 4.6304 L12: -0.9436 REMARK 3 L13: 1.8052 L23: -0.9336 REMARK 3 S TENSOR REMARK 3 S11: 0.1847 S12: 0.1964 S13: -0.1465 REMARK 3 S21: -0.1654 S22: -0.0766 S23: -0.0487 REMARK 3 S31: 0.4782 S32: 0.2578 S33: -0.0575 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 113:215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.500 6.344 -34.910 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.1307 REMARK 3 T33: 0.1743 T12: 0.0106 REMARK 3 T13: -0.0004 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.7214 L22: 4.8478 REMARK 3 L33: 2.0420 L12: 0.7764 REMARK 3 L13: 0.5862 L23: 1.4557 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: -0.0919 S13: 0.0937 REMARK 3 S21: 0.1167 S22: -0.1553 S23: 0.3260 REMARK 3 S31: 0.0610 S32: -0.1510 S33: -0.0191 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000255108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41276 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 67.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 2.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MEG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-PROPANOL, 0.1 M BICINE PH 8.5, REMARK 280 30% PEG 1500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 CYS L 218 REMARK 465 SER L 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS H 117 O ASP H 144 1.58 REMARK 500 O HOH L 336 O HOH L 397 1.84 REMARK 500 O ASP L 63 O HOH L 301 1.89 REMARK 500 OG SER H 62 O HOH H 301 1.98 REMARK 500 OE1 GLN L 1 O HOH L 302 2.00 REMARK 500 O HOH H 318 O HOH H 467 2.08 REMARK 500 OE2 GLU L 167 O HOH L 303 2.15 REMARK 500 OE1 GLU L 130 O HOH L 304 2.15 REMARK 500 O HOH H 374 O HOH H 480 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 196 CB CYS H 196 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 140 CA - CB - SG ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL H 98 -51.83 81.72 REMARK 500 ASP H 144 64.02 63.45 REMARK 500 ASN L 29 -91.58 -125.45 REMARK 500 ASN L 54 -44.64 76.65 REMARK 500 ASN L 55 20.23 -147.45 REMARK 500 SER L 93 -152.47 -145.34 REMARK 500 ASN L 135 30.32 70.69 REMARK 500 ASP L 158 -113.21 58.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N3F H 1 225 PDB 7N3F 7N3F 1 225 DBREF 7N3F L 1 219 PDB 7N3F 7N3F 1 219 SEQRES 1 H 231 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 231 PRO GLY GLU SER LEU ASN ILE SER CYS LYS ALA SER GLY SEQRES 3 H 231 TYR SER PHE THR ILE TYR TRP ILE ALA TRP VAL ARG GLN SEQRES 4 H 231 LEU PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE TYR SEQRES 5 H 231 PRO GLY ASP SER ASP THR ARG TYR SER PRO SER PHE GLN SEQRES 6 H 231 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE SER THR SEQRES 7 H 231 ALA TYR LEU GLN TRP ARG SER LEU LYS ALA SER ASP SER SEQRES 8 H 231 ALA VAL TYR TYR CYS ALA ARG GLY VAL ALA VAL ASP TRP SEQRES 9 H 231 TYR PHE ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SEQRES 10 H 231 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 231 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 231 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 231 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 231 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 231 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 231 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 231 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 18 H 231 CYS ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 218 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER GLY ALA SEQRES 2 L 218 PRO GLY GLN ARG VAL THR ILE SER CYS ALA GLY SER SER SEQRES 3 L 218 SER ASN ILE GLY ALA GLY PHE ASP VAL TYR TRP TYR GLN SEQRES 4 L 218 GLN LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLY SEQRES 5 L 218 ASN ASN ASN ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 218 GLY SER LYS SER GLY THR SER ALA SER LEU ALA ILE THR SEQRES 7 L 218 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SEQRES 8 L 218 SER SER GLY SER VAL LEU SER ASP LEU TYR VAL PHE GLY SEQRES 9 L 218 THR GLY THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA SEQRES 10 L 218 ALA PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU SEQRES 11 L 218 LEU GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER SEQRES 12 L 218 ASP PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA SEQRES 13 L 218 ASP SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR SEQRES 14 L 218 PRO SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER SEQRES 15 L 218 TYR LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SEQRES 16 L 218 SER TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL SEQRES 17 L 218 GLU LYS THR VAL ALA PRO THR GLU CYS SER FORMUL 3 HOH *371(H2 O) HELIX 1 AA1 SER H 28 TYR H 32 5 5 HELIX 2 AA2 LYS H 73 ILE H 75 5 3 HELIX 3 AA3 LYS H 83 SER H 87 5 5 HELIX 4 AA4 SER H 156 ALA H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 ASN L 29 GLY L 33 5 5 HELIX 7 AA7 GLN L 82 GLU L 86 5 5 HELIX 8 AA8 VAL L 97 LEU L 101 5 5 HELIX 9 AA9 SER L 128 ALA L 134 1 7 HELIX 10 AB1 THR L 188 HIS L 195 1 8 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 TRP H 82 -1 O TRP H 82 N LEU H 18 SHEET 4 AA1 4 THR H 68 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 GLY H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 TYR H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 ASP H 56 TYR H 59 -1 O ASP H 56 N TYR H 52 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 GLY H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 PHE H 100B TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 SER H 127 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 SER H 127 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 SER L 9 GLY L 13 0 SHEET 2 AA7 5 THR L 108 VAL L 112 1 O THR L 111 N VAL L 11 SHEET 3 AA7 5 ALA L 87 SER L 93 -1 N ALA L 87 O VAL L 110 SHEET 4 AA7 5 TYR L 37 GLN L 41 -1 N GLN L 41 O ASP L 88 SHEET 5 AA7 5 LYS L 48 ILE L 51 -1 O LEU L 50 N TRP L 38 SHEET 1 AA8 4 SER L 9 GLY L 13 0 SHEET 2 AA8 4 THR L 108 VAL L 112 1 O THR L 111 N VAL L 11 SHEET 3 AA8 4 ALA L 87 SER L 93 -1 N ALA L 87 O VAL L 110 SHEET 4 AA8 4 VAL L 103 PHE L 104 -1 O VAL L 103 N SER L 93 SHEET 1 AA9 3 VAL L 19 ALA L 24 0 SHEET 2 AA9 3 SER L 73 ILE L 78 -1 O LEU L 76 N ILE L 21 SHEET 3 AA9 3 PHE L 65 SER L 70 -1 N SER L 70 O SER L 73 SHEET 1 AB1 4 SER L 121 PHE L 125 0 SHEET 2 AB1 4 ALA L 137 PHE L 146 -1 O LEU L 142 N THR L 123 SHEET 3 AB1 4 TYR L 179 LEU L 187 -1 O LEU L 187 N ALA L 137 SHEET 4 AB1 4 VAL L 166 THR L 168 -1 N GLU L 167 O TYR L 184 SHEET 1 AB2 4 SER L 121 PHE L 125 0 SHEET 2 AB2 4 ALA L 137 PHE L 146 -1 O LEU L 142 N THR L 123 SHEET 3 AB2 4 TYR L 179 LEU L 187 -1 O LEU L 187 N ALA L 137 SHEET 4 AB2 4 SER L 172 LYS L 173 -1 N SER L 172 O ALA L 180 SHEET 1 AB3 4 SER L 160 VAL L 162 0 SHEET 2 AB3 4 THR L 152 ALA L 157 -1 N ALA L 157 O SER L 160 SHEET 3 AB3 4 TYR L 198 HIS L 204 -1 O GLN L 201 N ALA L 154 SHEET 4 AB3 4 SER L 207 VAL L 213 -1 O VAL L 209 N VAL L 202 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.12 SSBOND 3 CYS L 23 CYS L 91 1555 1555 2.15 SSBOND 4 CYS L 141 CYS L 200 1555 1555 2.03 CISPEP 1 PHE H 146 PRO H 147 0 -3.38 CISPEP 2 GLU H 148 PRO H 149 0 -0.98 CISPEP 3 TYR L 147 PRO L 148 0 -1.96 CRYST1 58.600 67.380 130.620 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017065 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007656 0.00000