HEADER IMMUNE SYSTEM 01-JUN-21 7N3G TITLE CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY TITLE 2 FAB FRAGMENT C098 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C098 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C098 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS-2, SPIKE PROTEIN, KEYWDS 2 NEUTRALIZING ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.I.FLYAK,P.J.BJORKMAN,C.O.BARNES REVDAT 4 18-OCT-23 7N3G 1 JRNL REVDAT 3 25-AUG-21 7N3G 1 JRNL REVDAT 2 11-AUG-21 7N3G 1 JRNL REVDAT 1 04-AUG-21 7N3G 0 JRNL AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, JRNL AUTH 2 D.SCHAEFER-BABAJEW,Z.WANG,J.C.C LORENZI,A.I.FLYAK, JRNL AUTH 3 A.T.DELAITSCH,K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER, JRNL AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, JRNL AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, JRNL AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ JRNL TITL AFFINITY MATURATION OF SARS-COV-2 NEUTRALIZING ANTIBODIES JRNL TITL 2 CONFERS POTENCY, BREADTH, AND RESILIENCE TO VIRAL ESCAPE JRNL TITL 3 MUTATIONS. JRNL REF IMMUNITY V. 54 1853 2021 JRNL REFN ISSN 1074-7613 JRNL PMID 34331873 JRNL DOI 10.1016/J.IMMUNI.2021.07.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, REMARK 1 AUTH 2 D.SCHAEFER-BABAJEW,J.C.C.LORENZI,A.I.FLYAK,A.T.DELAITSCH, REMARK 1 AUTH 3 K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER,Z.WANG, REMARK 1 AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, REMARK 1 AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, REMARK 1 AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ REMARK 1 TITL DEVELOPMENT OF POTENCY, BREADTH AND RESILIENCE TO VIRAL REMARK 1 TITL 2 ESCAPE MUTATIONS IN SARS-COV-2 NEUTRALIZING ANTIBODIES REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 33758864 REMARK 1 DOI 10.1101/2021.03.07.434227 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 92886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 4566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0500 - 4.4200 0.98 3250 164 0.2216 0.2521 REMARK 3 2 4.4200 - 3.5100 1.00 3130 151 0.1642 0.1789 REMARK 3 3 3.5100 - 3.0700 0.97 2967 145 0.1736 0.1919 REMARK 3 4 3.0700 - 2.7900 1.00 3045 139 0.1743 0.1883 REMARK 3 5 2.7800 - 2.5900 1.00 2977 169 0.1728 0.1921 REMARK 3 6 2.5900 - 2.4300 1.00 2989 178 0.1757 0.2046 REMARK 3 7 2.4300 - 2.3100 0.99 2921 154 0.1693 0.1557 REMARK 3 8 2.3100 - 2.2100 1.00 2976 161 0.1690 0.2100 REMARK 3 9 2.2100 - 2.1300 1.00 2960 171 0.1635 0.1799 REMARK 3 10 2.1300 - 2.0500 1.00 2900 175 0.1632 0.1843 REMARK 3 11 2.0500 - 1.9900 1.00 2967 146 0.1661 0.1785 REMARK 3 12 1.9900 - 1.9300 1.00 2929 148 0.1726 0.1960 REMARK 3 13 1.9300 - 1.8800 1.00 2959 137 0.1812 0.1789 REMARK 3 14 1.8800 - 1.8300 0.99 2887 169 0.1778 0.2131 REMARK 3 15 1.8300 - 1.7900 1.00 2925 167 0.1858 0.1700 REMARK 3 16 1.7900 - 1.7500 1.00 2917 144 0.1828 0.2289 REMARK 3 17 1.7500 - 1.7200 1.00 2943 149 0.1844 0.2250 REMARK 3 18 1.7200 - 1.6900 1.00 2941 142 0.1892 0.2255 REMARK 3 19 1.6900 - 1.6600 1.00 2899 144 0.1950 0.2348 REMARK 3 20 1.6600 - 1.6300 1.00 2897 167 0.2020 0.2175 REMARK 3 21 1.6300 - 1.6000 1.00 2896 150 0.2147 0.2486 REMARK 3 22 1.6000 - 1.5800 0.99 2912 150 0.2157 0.2566 REMARK 3 23 1.5800 - 1.5500 0.99 2914 151 0.2222 0.2054 REMARK 3 24 1.5500 - 1.5300 0.99 2902 150 0.2324 0.2546 REMARK 3 25 1.5300 - 1.5100 0.99 2891 142 0.2376 0.2861 REMARK 3 26 1.5100 - 1.4900 0.99 2863 164 0.2497 0.2606 REMARK 3 27 1.4900 - 1.4700 0.99 2948 113 0.2562 0.2681 REMARK 3 28 1.4700 - 1.4600 0.99 2884 143 0.2654 0.3059 REMARK 3 29 1.4600 - 1.4400 0.99 2864 134 0.2798 0.3365 REMARK 3 30 1.4400 - 1.4200 0.99 2867 149 0.2824 0.3073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3447 REMARK 3 ANGLE : 1.169 4725 REMARK 3 CHIRALITY : 0.090 539 REMARK 3 PLANARITY : 0.007 611 REMARK 3 DIHEDRAL : 20.264 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.508 -48.084 18.751 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.1222 REMARK 3 T33: 0.1134 T12: -0.0150 REMARK 3 T13: -0.0030 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.9478 L22: 2.4968 REMARK 3 L33: 1.5979 L12: 1.3224 REMARK 3 L13: 0.0178 L23: -0.6083 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: 0.0223 S13: -0.0271 REMARK 3 S21: -0.1340 S22: 0.0487 S23: -0.0969 REMARK 3 S31: 0.0201 S32: -0.0412 S33: 0.0387 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 119:215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.970 -23.885 7.359 REMARK 3 T TENSOR REMARK 3 T11: 0.4080 T22: 0.4136 REMARK 3 T33: 0.3223 T12: 0.1016 REMARK 3 T13: -0.0961 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 4.4490 L22: 2.1719 REMARK 3 L33: 2.3845 L12: -0.7950 REMARK 3 L13: 2.4197 L23: -0.9240 REMARK 3 S TENSOR REMARK 3 S11: -0.2040 S12: -0.8955 S13: -0.0036 REMARK 3 S21: 0.5862 S22: 0.3625 S23: -0.1210 REMARK 3 S31: -0.2438 S32: -0.2679 S33: -0.2132 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.238 -58.328 1.659 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.0962 REMARK 3 T33: 0.1034 T12: -0.0012 REMARK 3 T13: -0.0034 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 3.0705 L22: 1.7981 REMARK 3 L33: 2.5621 L12: -0.1205 REMARK 3 L13: 1.1256 L23: -0.0914 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0361 S13: -0.1339 REMARK 3 S21: 0.0030 S22: -0.0779 S23: -0.0630 REMARK 3 S31: -0.0445 S32: 0.1667 S33: 0.0621 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 109:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.170 -23.498 -8.666 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.1745 REMARK 3 T33: 0.2669 T12: 0.0332 REMARK 3 T13: -0.0571 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.2171 L22: 2.7450 REMARK 3 L33: 2.4583 L12: 0.4599 REMARK 3 L13: 0.2592 L23: 0.5678 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0120 S13: 0.3436 REMARK 3 S21: 0.1394 S22: 0.0399 S23: -0.3189 REMARK 3 S31: -0.2345 S32: 0.2633 S33: -0.0067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000255110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93013 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 76.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 17.00 REMARK 200 R MERGE FOR SHELL (I) : 2.07900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6XC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, CITRIC ACID PH REMARK 280 3.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.16400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.08200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.12300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.04100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 180.20500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 144.16400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.08200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.04100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.12300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 180.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 431 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 157 REMARK 465 ALA H 158 REMARK 465 LEU H 159 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 CYS L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG L 55 O HOH L 301 1.38 REMARK 500 HH12 ARG L 55 O PHE L 63 1.53 REMARK 500 HH21 ARG L 55 O HOH L 301 1.58 REMARK 500 O HOH L 396 O HOH L 431 1.80 REMARK 500 O HOH L 453 O HOH L 464 1.85 REMARK 500 NE ARG L 55 O HOH L 301 1.88 REMARK 500 O HOH H 362 O HOH H 388 1.88 REMARK 500 O HOH H 347 O HOH H 424 1.90 REMARK 500 O HOH H 414 O HOH H 427 1.90 REMARK 500 O HOH L 449 O HOH L 481 1.91 REMARK 500 O HOH L 438 O HOH L 454 1.94 REMARK 500 O HOH L 446 O HOH L 474 1.99 REMARK 500 O HOH L 339 O HOH L 369 1.99 REMARK 500 O HOH H 428 O HOH H 443 1.99 REMARK 500 O HOH H 397 O HOH H 409 1.99 REMARK 500 NH2 ARG L 55 O HOH L 301 2.01 REMARK 500 OG SER L 115 OD1 ASN L 138 2.05 REMARK 500 O HOH L 365 O HOH L 463 2.06 REMARK 500 OD2 ASP L 71 O HOH L 302 2.07 REMARK 500 O HOH L 433 O HOH L 473 2.09 REMARK 500 O HOH L 329 O HOH L 466 2.13 REMARK 500 NH1 ARG L 55 O PHE L 63 2.13 REMARK 500 O HOH H 438 O HOH H 449 2.18 REMARK 500 O HOH H 363 O HOH H 409 2.19 REMARK 500 CZ ARG L 55 O HOH L 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 443 O HOH H 443 10445 1.42 REMARK 500 O HOH H 309 O HOH L 474 8545 1.75 REMARK 500 O HOH L 470 O HOH L 470 10445 1.80 REMARK 500 O HOH H 432 O HOH L 431 5655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS L 40 CD - CE - NZ ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 144 66.59 65.57 REMARK 500 ALA L 52 -36.72 72.19 REMARK 500 ALA L 85 172.19 177.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N3G H 1 225 PDB 7N3G 7N3G 1 225 DBREF 7N3G L 1 215 PDB 7N3G 7N3G 1 215 SEQRES 1 H 230 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 230 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 PHE THR VAL SER SER ASN TYR MET SER TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TYR SEQRES 5 H 230 SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 230 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 230 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 230 VAL TYR TYR CYS ALA ARG ASP LEU TYR SER SER GLY GLY SEQRES 9 H 230 THR ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SEQRES 10 H 230 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 230 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 230 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 230 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 230 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 230 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 230 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 230 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 18 H 230 ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY SER SER PRO GLY THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *336(H2 O) HELIX 1 AA1 THR H 28 ASN H 32 5 5 HELIX 2 AA2 ASN H 73 LYS H 75 5 3 HELIX 3 AA3 ARG H 83 THR H 87 5 5 HELIX 4 AA4 SER H 127 LYS H 129 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 SER L 30 SER L 32 5 3 HELIX 8 AA8 GLU L 80 PHE L 84 5 5 HELIX 9 AA9 SER L 122 LYS L 127 1 6 HELIX 10 AB1 LYS L 184 HIS L 190 1 7 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 GLY H 10 ILE H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O MET H 108 N GLY H 10 SHEET 3 AA2 6 ALA H 88 TYR H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TYR H 58 N VAL H 50 SHEET 1 AA3 4 GLY H 10 ILE H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O MET H 108 N GLY H 10 SHEET 3 AA3 4 ALA H 88 TYR H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 GLY H 100 TRP H 103 -1 O GLY H 100A N LEU H 96 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA6 3 THR H 205 VAL H 211 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 3 LEU L 4 SER L 7 0 SHEET 2 AA7 3 ALA L 19 VAL L 29 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 3 PHE L 63 ILE L 76 -1 O LEU L 74 N LEU L 21 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA8 6 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA8 6 LEU L 34 GLN L 39 -1 N ALA L 35 O GLN L 90 SHEET 5 AA8 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA9 4 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA9 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 THR L 130 PHE L 140 -1 O ASN L 138 N SER L 115 SHEET 3 AB1 4 TYR L 174 SER L 183 -1 O SER L 178 N CYS L 135 SHEET 4 AB1 4 SER L 160 VAL L 164 -1 N SER L 163 O SER L 177 SHEET 1 AB2 4 ALA L 154 LEU L 155 0 SHEET 2 AB2 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB2 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB2 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.01 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 89 1555 1555 2.15 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.02 CISPEP 1 PHE H 146 PRO H 147 0 -3.66 CISPEP 2 GLU H 148 PRO H 149 0 5.74 CISPEP 3 SER L 7 PRO L 8 0 -6.92 CISPEP 4 SER L 7 PRO L 8 0 -10.01 CISPEP 5 SER L 95 PRO L 96 0 -3.92 CISPEP 6 SER L 95 PRO L 96 0 -6.21 CISPEP 7 TYR L 141 PRO L 142 0 3.47 CRYST1 88.100 88.100 216.246 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011351 0.006553 0.000000 0.00000 SCALE2 0.000000 0.013107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004624 0.00000