HEADER IMMUNE SYSTEM 01-JUN-21 7N3H TITLE CRYSTAL STRUCTURE OF AN ANTI-SARS-COV-2 HUMAN NEUTRALIZING ANTIBODY TITLE 2 FAB FRAGMENT C099 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C099 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: C099 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS-2, SPIKE PROTEIN, KEYWDS 2 NEUTRALIZING ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.I.FLYAK,P.J.BJORKMAN,C.O.BARNES REVDAT 4 18-OCT-23 7N3H 1 JRNL REVDAT 3 25-AUG-21 7N3H 1 JRNL REVDAT 2 11-AUG-21 7N3H 1 JRNL REVDAT 1 04-AUG-21 7N3H 0 JRNL AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, JRNL AUTH 2 D.SCHAEFER-BABAJEW,Z.WANG,J.C.C LORENZI,A.I.FLYAK, JRNL AUTH 3 A.T.DELAITSCH,K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER, JRNL AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, JRNL AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, JRNL AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ JRNL TITL AFFINITY MATURATION OF SARS-COV-2 NEUTRALIZING ANTIBODIES JRNL TITL 2 CONFERS POTENCY, BREADTH, AND RESILIENCE TO VIRAL ESCAPE JRNL TITL 3 MUTATIONS. JRNL REF IMMUNITY V. 54 1853 2021 JRNL REFN ISSN 1074-7613 JRNL PMID 34331873 JRNL DOI 10.1016/J.IMMUNI.2021.07.008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.MUECKSCH,Y.WEISBLUM,C.O.BARNES,F.SCHMIDT, REMARK 1 AUTH 2 D.SCHAEFER-BABAJEW,J.C.C.LORENZI,A.I.FLYAK,A.T.DELAITSCH, REMARK 1 AUTH 3 K.E.HUEY-TUBMAN,S.HOU,C.A.SCHIFFER,C.GAEBLER,Z.WANG, REMARK 1 AUTH 4 J.DA SILVA,D.POSTON,S.FINKIN,A.CHO,M.CIPOLLA,T.Y.OLIVEIRA, REMARK 1 AUTH 5 K.G.MILLARD,V.RAMOS,A.GAZUMYAN,M.RUTKOWSKA,M.CASKEY, REMARK 1 AUTH 6 M.C.NUSSENZWEIG,P.J.BJORKMAN,T.HATZIIOANNOU,P.D.BIENIASZ REMARK 1 TITL DEVELOPMENT OF POTENCY, BREADTH AND RESILIENCE TO VIRAL REMARK 1 TITL 2 ESCAPE MUTATIONS IN SARS-COV-2 NEUTRALIZING ANTIBODIES REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 33758864 REMARK 1 DOI 10.1101/2021.03.07.434227 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 115665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9500 - 3.9300 0.96 4126 226 0.1687 0.1623 REMARK 3 2 3.8900 - 3.1100 0.91 3771 166 0.1542 0.1980 REMARK 3 3 3.1100 - 2.7100 0.97 4035 201 0.1649 0.1862 REMARK 3 4 2.7100 - 2.4700 0.90 3676 205 0.1632 0.1870 REMARK 3 5 2.4700 - 2.2900 0.99 4068 201 0.1649 0.1936 REMARK 3 6 2.2900 - 2.1500 0.80 3238 202 0.1915 0.2414 REMARK 3 7 2.1500 - 2.0500 0.83 3376 169 0.1491 0.1633 REMARK 3 8 2.0500 - 1.9600 0.97 3592 206 0.1499 0.1836 REMARK 3 9 1.9500 - 1.8800 0.44 1584 79 0.2178 0.2658 REMARK 3 10 1.8800 - 1.8200 0.98 3968 211 0.1599 0.1625 REMARK 3 11 1.8200 - 1.7600 0.98 3956 206 0.1539 0.1707 REMARK 3 12 1.7600 - 1.7100 0.99 3975 227 0.1580 0.1937 REMARK 3 13 1.7100 - 1.6700 0.99 4010 209 0.1665 0.1963 REMARK 3 14 1.6700 - 1.6200 1.00 3965 229 0.1688 0.1833 REMARK 3 15 1.6200 - 1.5900 0.99 4028 202 0.1780 0.1922 REMARK 3 16 1.5900 - 1.5500 0.93 3735 223 0.1849 0.1887 REMARK 3 17 1.5500 - 1.5200 0.67 2680 136 0.1898 0.2298 REMARK 3 18 1.5200 - 1.4900 0.97 3950 205 0.1960 0.2178 REMARK 3 19 1.4900 - 1.4700 0.64 2573 124 0.2130 0.2544 REMARK 3 20 1.4700 - 1.4400 0.64 2601 130 0.2315 0.2286 REMARK 3 21 1.4400 - 1.4200 0.99 3949 195 0.2300 0.2413 REMARK 3 22 1.4200 - 1.4000 0.99 3959 242 0.2292 0.2460 REMARK 3 23 1.4000 - 1.3800 0.99 3953 190 0.2371 0.2864 REMARK 3 24 1.3800 - 1.3600 0.98 3929 222 0.2571 0.2767 REMARK 3 25 1.3600 - 1.3400 0.93 3721 185 0.2653 0.2910 REMARK 3 26 1.3400 - 1.3200 0.96 3847 210 0.2716 0.2860 REMARK 3 27 1.3200 - 1.3100 0.97 3854 218 0.2917 0.2901 REMARK 3 28 1.3100 - 1.2900 0.98 3962 201 0.3602 0.3665 REMARK 3 29 1.2900 - 1.2700 0.97 3910 193 0.3469 0.3824 REMARK 3 30 1.2700 - 1.2600 0.98 3851 210 0.3083 0.2795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3354 REMARK 3 ANGLE : 1.070 4587 REMARK 3 CHIRALITY : 0.082 524 REMARK 3 PLANARITY : 0.007 590 REMARK 3 DIHEDRAL : 19.959 1232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 2:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.121 39.388 30.232 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0914 REMARK 3 T33: 0.0970 T12: 0.0047 REMARK 3 T13: 0.0057 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.9993 L22: 2.2259 REMARK 3 L33: 0.9630 L12: 0.1805 REMARK 3 L13: -0.3661 L23: 0.6188 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.0625 S13: -0.1416 REMARK 3 S21: 0.0098 S22: 0.0264 S23: -0.0124 REMARK 3 S31: 0.0593 S32: 0.0417 S33: 0.0248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 119:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.800 15.366 18.696 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0875 REMARK 3 T33: 0.0756 T12: 0.0095 REMARK 3 T13: -0.0109 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.3912 L22: 0.6655 REMARK 3 L33: 0.9538 L12: 0.3135 REMARK 3 L13: -0.5541 L23: 0.1368 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0669 S13: -0.0461 REMARK 3 S21: 0.0319 S22: 0.0340 S23: -0.0731 REMARK 3 S31: 0.0134 S32: 0.1352 S33: -0.0261 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.059 49.055 12.538 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.0946 REMARK 3 T33: 0.0867 T12: -0.0145 REMARK 3 T13: 0.0154 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.9214 L22: 1.7198 REMARK 3 L33: 1.5524 L12: -0.3562 REMARK 3 L13: -0.5661 L23: 0.2372 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0216 S13: 0.1186 REMARK 3 S21: -0.0908 S22: -0.0159 S23: -0.1159 REMARK 3 S31: -0.0737 S32: 0.0730 S33: -0.0049 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 109:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.793 12.964 2.511 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.1050 REMARK 3 T33: 0.0686 T12: 0.0043 REMARK 3 T13: -0.0019 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.7116 L22: 3.3611 REMARK 3 L33: 1.0433 L12: 0.3617 REMARK 3 L13: -0.2534 L23: 0.3172 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0461 S13: -0.0235 REMARK 3 S21: -0.0288 S22: -0.0027 S23: 0.0918 REMARK 3 S31: 0.1033 S32: -0.0235 S33: 0.0156 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000255111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 57.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.88800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6XC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 M AMMONIUM SULFATE, CITRIC ACID PH REMARK 280 3.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER H 187 O HOH H 302 1.42 REMARK 500 HH TYR L 92 O HOH L 305 1.45 REMARK 500 HZ2 LYS L 150 O HOH L 310 1.58 REMARK 500 O HOH L 391 O HOH L 596 1.64 REMARK 500 O HOH L 452 O HOH L 608 1.82 REMARK 500 O HOH L 518 O HOH L 562 1.88 REMARK 500 O HOH L 618 O HOH L 621 1.88 REMARK 500 O HOH L 303 O HOH L 356 1.91 REMARK 500 O HOH H 407 O HOH L 305 1.92 REMARK 500 O HOH L 537 O HOH L 577 1.92 REMARK 500 O HOH L 496 O HOH L 600 1.97 REMARK 500 O HOH H 316 O HOH H 412 1.97 REMARK 500 OD1 ASN H 204 O HOH H 301 1.98 REMARK 500 OE1 GLN L 156 O HOH L 301 1.98 REMARK 500 O HOH L 543 O HOH L 547 1.98 REMARK 500 O HOH L 521 O HOH L 606 2.00 REMARK 500 O HOH L 514 O HOH L 592 2.02 REMARK 500 O HOH L 317 O HOH L 435 2.02 REMARK 500 O HOH L 495 O HOH L 546 2.04 REMARK 500 O HOH H 590 O HOH H 600 2.05 REMARK 500 O HOH H 329 O HOH H 392 2.05 REMARK 500 O HOH L 437 O HOH L 478 2.06 REMARK 500 OG SER H 187 O HOH H 302 2.07 REMARK 500 NE2 GLN L 101 O HOH L 302 2.07 REMARK 500 OE1 GLU L 124 O HOH L 303 2.07 REMARK 500 O HOH L 426 O HOH L 558 2.10 REMARK 500 O HOH H 532 O HOH H 550 2.12 REMARK 500 OE1 GLU L 82 O HOH L 304 2.13 REMARK 500 O HOH H 514 O HOH H 586 2.14 REMARK 500 O PRO H 126 O HOH H 303 2.15 REMARK 500 O HOH H 447 O HOH H 577 2.16 REMARK 500 OH TYR L 92 O HOH L 305 2.16 REMARK 500 O HOH H 329 O HOH H 550 2.17 REMARK 500 O HOH H 307 O HOH L 356 2.18 REMARK 500 O HOH H 533 O HOH H 570 2.19 REMARK 500 O HOH H 439 O HOH H 584 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 412 O HOH L 554 4455 1.81 REMARK 500 O HOH H 504 O HOH H 570 3555 1.98 REMARK 500 O HOH H 485 O HOH L 337 3555 2.00 REMARK 500 OG1 THR L 5 OD1 ASN L 153 4455 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 97 -136.18 56.08 REMARK 500 ASP H 144 70.41 58.96 REMARK 500 ALA L 52 -33.51 70.20 REMARK 500 SER L 53 -1.57 -140.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 621 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH L 622 DISTANCE = 6.50 ANGSTROMS DBREF 7N3H H 1 225 PDB 7N3H 7N3H 1 225 DBREF 7N3H L 1 215 PDB 7N3H 7N3H 1 215 SEQRES 1 H 230 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 230 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 ILE THR VAL SER SER ASN TYR MET SER TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL MET TYR SEQRES 5 H 230 ALA GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 230 ARG PHE THR ILE SER ARG ASP ASP SER LYS ASN THR LEU SEQRES 7 H 230 PHE LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 230 ILE TYR TYR CYS ALA ARG ASP LEU TYR SER SER GLY GLY SEQRES 9 H 230 THR ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SEQRES 10 H 230 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 230 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 230 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 230 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 230 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 230 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 230 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 230 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 18 H 230 ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER ILE GLY SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY LEU ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER ARG ARG ALA THR GLY ILE PRO ASP LYS PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY ALA ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY SER SER PRO GLY THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *632(H2 O) HELIX 1 AA1 THR H 28 ASN H 32 5 5 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 TYR H 97 GLY H 100 5 4 HELIX 4 AA4 SER H 156 ALA H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLY L 30 SER L 32 5 3 HELIX 8 AA8 GLU L 80 PHE L 84 5 5 HELIX 9 AA9 SER L 122 GLY L 129 1 8 HELIX 10 AB1 LYS L 184 GLU L 188 1 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 ILE H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA2 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 MET H 51 -1 O MET H 51 N MET H 34 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O PHE H 58 N VAL H 50 SHEET 1 AA3 4 GLY H 10 ILE H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA3 4 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 THR H 100B TRP H 103 -1 O ILE H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 71 ILE L 76 -1 O LEU L 74 N LEU L 21 SHEET 4 AA7 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA8 6 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA8 6 LEU L 34 GLN L 39 -1 N GLN L 39 O VAL L 86 SHEET 5 AA8 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 ARG L 54 ARG L 55 -1 O ARG L 54 N TYR L 50 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 11 SHEET 3 AA9 4 ALA L 85 GLN L 91 -1 N ALA L 85 O VAL L 105 SHEET 4 AA9 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 THR L 130 PHE L 140 -1 O ASN L 138 N SER L 115 SHEET 3 AB1 4 TYR L 174 SER L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 AB1 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB2 4 ALA L 154 LEU L 155 0 SHEET 2 AB2 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB2 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB2 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.07 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 89 1555 1555 2.13 SSBOND 4 CYS L 135 CYS L 195 1555 1555 2.09 CISPEP 1 PHE H 146 PRO H 147 0 -4.30 CISPEP 2 GLU H 148 PRO H 149 0 2.55 CISPEP 3 SER L 7 PRO L 8 0 -7.46 CISPEP 4 SER L 7 PRO L 8 0 -7.37 CISPEP 5 SER L 95 PRO L 96 0 -8.53 CISPEP 6 TYR L 141 PRO L 142 0 -0.20 CRYST1 44.100 92.580 115.150 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008684 0.00000