HEADER RNA BINDING PROTEIN 03-JUN-21 7N45 TITLE SOLUTION NMR STRUCTURE OF THE N-TERMINAL GLOBULAR DOMAIN OF THE TITLE 2 ENDEMIC HKU1 CORONAVIRUS NUCLEOCAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CORONAVIRUS HKU1; SOURCE 3 ORGANISM_COMMON: HCOV-HKU1; SOURCE 4 ORGANISM_TAXID: 290028; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEOCAPSID, N-TERMINAL DOMAIN, RNA BINDING DOMAIN, RNA BINDING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR I.P.CARUSO,A.L.MARQUES,M.C.SANTANA-SILVA,F.C.L.ALMEIDA,G.C.AMORIM REVDAT 2 14-JUN-23 7N45 1 REMARK REVDAT 1 08-JUN-22 7N45 0 JRNL AUTH I.P.CARUSO,A.L.MARQUES,M.C.SANTANA-SILVA,F.C.L.ALMEIDA, JRNL AUTH 2 G.C.AMORIM JRNL TITL SOLUTION NMR STRUCTURE OF THE N-TERMINAL GLOBULAR DOMAIN OF JRNL TITL 2 THE ENDEMIC HKU1 CORONAVIRUS NUCLEOCAPSID PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257273. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 250 UM [U-13C; U-15N] REMARK 210 NUCLEOCAPSID PROTEIN NTD, 50 MM REMARK 210 SODIUM PHOSPHATE, 3 MM SODIUM REMARK 210 AZIDE, 3 MM EDTA, 50 MM SODIUM REMARK 210 CHLORIDE, 500 UM PMSF, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HCCH-TOCSY HCCH; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, ARIA, CS REMARK 210 -ROSETTA, NMRPIPE REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 74 HG SER A 106 1.21 REMARK 500 HH TYR A 44 H TYR A 77 1.33 REMARK 500 HH11 ARG A 66 O SER A 138 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 50 69.00 -118.74 REMARK 500 1 GLU A 84 76.35 -64.69 REMARK 500 1 ALA A 93 163.07 179.92 REMARK 500 1 THR A 101 145.28 -170.81 REMARK 500 1 SER A 106 -170.23 -176.33 REMARK 500 1 SER A 107 76.47 57.17 REMARK 500 1 GLU A 133 -92.62 -135.88 REMARK 500 1 SER A 135 65.11 -69.69 REMARK 500 2 ASP A 104 39.88 -85.68 REMARK 500 2 ALA A 115 75.33 48.14 REMARK 500 3 LYS A 54 -169.85 -100.70 REMARK 500 3 GLU A 84 74.40 -66.06 REMARK 500 3 GLN A 96 -1.74 86.14 REMARK 500 3 THR A 101 149.27 -170.03 REMARK 500 4 THR A 3 -158.61 -152.01 REMARK 500 4 ILE A 4 133.27 -37.77 REMARK 500 4 GLU A 84 78.65 -66.58 REMARK 500 4 ASP A 104 47.71 -88.93 REMARK 500 4 VAL A 105 -39.21 -154.09 REMARK 500 4 SER A 106 -139.49 49.51 REMARK 500 5 THR A 3 -156.02 -150.18 REMARK 500 6 ILE A 4 133.64 -38.76 REMARK 500 6 TYR A 7 -94.52 -107.90 REMARK 500 6 ALA A 93 159.82 179.21 REMARK 500 6 ASP A 104 31.21 -86.27 REMARK 500 6 SER A 107 86.81 -62.33 REMARK 500 6 ARG A 137 -151.55 -116.06 REMARK 500 7 GLU A 84 83.19 -65.15 REMARK 500 7 ASP A 104 30.43 -87.49 REMARK 500 8 ARG A 51 112.85 -160.42 REMARK 500 8 TYR A 82 108.33 -58.16 REMARK 500 8 GLU A 84 68.86 -68.17 REMARK 500 8 THR A 101 148.99 -170.03 REMARK 500 8 ASP A 104 38.95 -86.75 REMARK 500 8 PRO A 122 86.36 -55.72 REMARK 500 9 TYR A 7 31.08 -99.73 REMARK 500 9 GLU A 84 76.62 -64.26 REMARK 500 10 THR A 3 -159.16 -137.01 REMARK 500 10 ILE A 4 132.84 -36.20 REMARK 500 10 PRO A 5 28.42 -77.70 REMARK 500 10 HIS A 6 58.00 -156.56 REMARK 500 10 SER A 11 -177.89 -66.86 REMARK 500 10 TYR A 82 108.06 -57.91 REMARK 500 10 GLU A 84 77.73 -64.12 REMARK 500 11 LEU A 63 -150.09 -113.04 REMARK 500 11 GLU A 84 73.88 -67.30 REMARK 500 11 ALA A 93 163.06 178.24 REMARK 500 12 THR A 3 -158.68 -136.83 REMARK 500 12 ARG A 108 147.81 -39.00 REMARK 500 13 ILE A 4 133.87 -39.82 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 33 PHE A 34 1 147.45 REMARK 500 VAL A 92 ALA A 93 1 148.55 REMARK 500 PHE A 10 SER A 11 2 149.81 REMARK 500 TRP A 45 TYR A 46 2 147.25 REMARK 500 TRP A 45 TYR A 46 3 147.34 REMARK 500 VAL A 92 ALA A 93 3 147.57 REMARK 500 TYR A 130 TYR A 131 3 149.68 REMARK 500 TRP A 45 TYR A 46 4 147.36 REMARK 500 VAL A 92 ALA A 93 4 147.04 REMARK 500 VAL A 92 ALA A 93 5 146.95 REMARK 500 VAL A 92 ALA A 93 6 148.00 REMARK 500 ARG A 137 SER A 138 6 -148.60 REMARK 500 LYS A 23 PHE A 24 7 147.13 REMARK 500 VAL A 92 ALA A 93 7 148.05 REMARK 500 VAL A 92 ALA A 93 8 145.72 REMARK 500 TYR A 130 TYR A 131 8 138.50 REMARK 500 TRP A 45 TYR A 46 9 149.59 REMARK 500 VAL A 92 ALA A 93 9 146.67 REMARK 500 PHE A 10 SER A 11 10 149.48 REMARK 500 VAL A 92 ALA A 93 10 149.04 REMARK 500 TYR A 130 TYR A 131 10 147.04 REMARK 500 ALA A 33 PHE A 34 11 147.75 REMARK 500 VAL A 92 ALA A 93 12 144.16 REMARK 500 PHE A 10 SER A 11 13 149.00 REMARK 500 VAL A 92 ALA A 93 13 148.03 REMARK 500 TRP A 45 TYR A 46 14 149.98 REMARK 500 LEU A 63 LEU A 64 14 -148.53 REMARK 500 VAL A 92 ALA A 93 14 147.65 REMARK 500 GLY A 134 SER A 135 14 -148.48 REMARK 500 TRP A 45 TYR A 46 15 149.41 REMARK 500 VAL A 92 ALA A 93 15 148.64 REMARK 500 VAL A 92 ALA A 93 16 146.74 REMARK 500 VAL A 92 ALA A 93 17 146.01 REMARK 500 ALA A 33 PHE A 34 18 147.31 REMARK 500 VAL A 92 ALA A 93 18 148.34 REMARK 500 VAL A 92 ALA A 93 19 148.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50507 RELATED DB: BMRB DBREF 7N45 A 1 138 UNP U3NAH8 U3NAH8_CVHK1 56 193 SEQRES 1 A 138 GLY ASN THR ILE PRO HIS TYR SER TRP PHE SER GLY ILE SEQRES 2 A 138 THR GLN PHE GLN LYS GLY ARG ASP PHE LYS PHE SER ASP SEQRES 3 A 138 GLY GLN GLY VAL PRO ILE ALA PHE GLY VAL PRO PRO SER SEQRES 4 A 138 GLU ALA LYS GLY TYR TRP TYR ARG HIS SER ARG ARG SER SEQRES 5 A 138 PHE LYS THR ALA ASP GLY GLN GLN LYS GLN LEU LEU PRO SEQRES 6 A 138 ARG TRP TYR PHE TYR TYR LEU GLY THR GLY PRO TYR ALA SEQRES 7 A 138 ASN ALA SER TYR GLY GLU SER LEU GLU GLY VAL PHE TRP SEQRES 8 A 138 VAL ALA ASN HIS GLN ALA ASP THR SER THR PRO SER ASP SEQRES 9 A 138 VAL SER SER ARG ASP PRO THR THR GLN GLU ALA ILE PRO SEQRES 10 A 138 THR ARG PHE PRO PRO GLY THR ILE LEU PRO GLN GLY TYR SEQRES 11 A 138 TYR VAL GLU GLY SER GLY ARG SER HELIX 1 AA1 PRO A 37 GLU A 40 5 4 SHEET 1 AA1 4 ARG A 47 HIS A 48 0 SHEET 2 AA1 4 ARG A 66 TRP A 67 -1 O ARG A 66 N HIS A 48 SHEET 3 AA1 4 ILE A 13 GLN A 15 -1 N ILE A 13 O TRP A 67 SHEET 4 AA1 4 TYR A 130 VAL A 132 -1 O TYR A 131 N THR A 14 SHEET 1 AA2 3 TYR A 70 TYR A 71 0 SHEET 2 AA2 3 LYS A 42 TYR A 44 -1 N TYR A 44 O TYR A 70 SHEET 3 AA2 3 VAL A 92 ALA A 93 -1 O VAL A 92 N GLY A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1