HEADER VIRAL PROTEIN, HYDROLASE/INHIBITOR 03-JUN-21 7N47 TITLE THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988514 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 GENE: PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN, HYDROLASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 25-OCT-23 7N47 1 REMARK REVDAT 2 29-MAR-23 7N47 1 JRNL REVDAT 1 08-JUN-22 7N47 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 11234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3700 - 3.7600 0.97 2759 140 0.1911 0.2264 REMARK 3 2 3.7600 - 2.9900 0.99 2663 132 0.2387 0.2849 REMARK 3 3 2.9900 - 2.6100 0.99 2664 107 0.2861 0.3133 REMARK 3 4 2.6100 - 2.3700 0.99 2627 142 0.2902 0.3553 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.673 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1560 REMARK 3 ANGLE : 0.511 2111 REMARK 3 CHIRALITY : 0.039 219 REMARK 3 PLANARITY : 0.003 264 REMARK 3 DIHEDRAL : 16.440 224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7121 22.7852 -4.0379 REMARK 3 T TENSOR REMARK 3 T11: 0.8235 T22: 0.6144 REMARK 3 T33: 0.4567 T12: 0.0417 REMARK 3 T13: -0.1853 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 9.7221 L22: 4.9853 REMARK 3 L33: 5.0684 L12: 0.9121 REMARK 3 L13: -1.4964 L23: -3.3180 REMARK 3 S TENSOR REMARK 3 S11: 0.5946 S12: -1.4650 S13: -0.1861 REMARK 3 S21: 0.9081 S22: -0.4975 S23: -0.1843 REMARK 3 S31: -0.6497 S32: 0.2533 S33: -0.0633 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6025 25.1971 -10.8902 REMARK 3 T TENSOR REMARK 3 T11: 0.6693 T22: 0.4106 REMARK 3 T33: 0.5910 T12: -0.0018 REMARK 3 T13: -0.2783 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 6.9459 L22: 5.4821 REMARK 3 L33: 8.2446 L12: -1.0940 REMARK 3 L13: -2.8539 L23: 1.4505 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: -0.5770 S13: 0.5359 REMARK 3 S21: 0.3011 S22: -0.0262 S23: 0.0476 REMARK 3 S31: -1.0262 S32: 0.7506 S33: 0.3160 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6879 23.6278 -22.1625 REMARK 3 T TENSOR REMARK 3 T11: 0.6424 T22: 0.4617 REMARK 3 T33: 0.4655 T12: 0.0236 REMARK 3 T13: -0.1738 T23: 0.2052 REMARK 3 L TENSOR REMARK 3 L11: 7.6488 L22: 3.5928 REMARK 3 L33: 3.7330 L12: 0.7393 REMARK 3 L13: 0.4097 L23: -0.0806 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.4191 S13: 0.2379 REMARK 3 S21: -0.5867 S22: -0.2727 S23: -0.1457 REMARK 3 S31: -0.4879 S32: 0.3221 S33: 0.3157 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8302 34.2606 -27.3570 REMARK 3 T TENSOR REMARK 3 T11: 1.9196 T22: 0.8182 REMARK 3 T33: 0.6877 T12: 0.4938 REMARK 3 T13: -0.1631 T23: 0.1732 REMARK 3 L TENSOR REMARK 3 L11: 6.8908 L22: 9.1658 REMARK 3 L33: 8.0278 L12: 7.7936 REMARK 3 L13: -1.1774 L23: 0.2261 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.9710 S13: 1.3964 REMARK 3 S21: 0.4992 S22: 0.3100 S23: 1.5509 REMARK 3 S31: -0.2438 S32: -0.2295 S33: -0.5330 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9383 24.2135 -29.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.8071 T22: 0.5738 REMARK 3 T33: 0.5512 T12: 0.1418 REMARK 3 T13: -0.2676 T23: 0.1284 REMARK 3 L TENSOR REMARK 3 L11: 8.7925 L22: 3.2778 REMARK 3 L33: 8.7228 L12: 2.3723 REMARK 3 L13: -6.3388 L23: -1.5454 REMARK 3 S TENSOR REMARK 3 S11: 0.1641 S12: 1.0729 S13: 0.1203 REMARK 3 S21: -0.5765 S22: -0.2051 S23: 0.3924 REMARK 3 S31: 0.0351 S32: -0.1193 S33: 0.0444 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7749 21.5207 -16.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.5722 T22: 0.4804 REMARK 3 T33: 0.5585 T12: 0.2389 REMARK 3 T13: -0.3258 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 4.6902 L22: 1.1978 REMARK 3 L33: 5.7957 L12: 2.1539 REMARK 3 L13: -1.8382 L23: 0.2418 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: -0.0256 S13: -0.0658 REMARK 3 S21: 0.4130 S22: -0.2506 S23: 0.3020 REMARK 3 S31: -0.2507 S32: -0.6761 S33: 0.2918 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11241 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 74.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.79800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.57950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.79800 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.57950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.79800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.57950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.79800 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.57950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.79800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.57950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.79800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.57950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.79800 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.57950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.79800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.79800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.57950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -726.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 ILE A 85 CD1 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 137 CD CE NZ REMARK 470 ILE A 138 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 165 CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 93 OG1 THR A 97 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 97 -63.02 -95.98 REMARK 500 ARG A 125 -166.56 -106.98 REMARK 500 THR A 162 -66.66 62.93 REMARK 500 SER A 194 -9.16 -155.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 96.8 REMARK 620 3 GLU A 119 OE2 175.5 83.6 REMARK 620 4 ILE A 120 O 88.2 93.1 87.3 REMARK 620 5 09Y A 207 O15 80.4 172.6 98.6 80.1 REMARK 620 6 09Y A 207 O13 97.3 104.0 86.9 161.2 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 86.8 REMARK 620 3 09Y A 207 O13 115.3 77.9 REMARK 620 4 09Y A 207 O10 112.9 149.3 72.5 REMARK 620 5 HOH A 302 O 93.8 97.1 149.9 104.3 REMARK 620 6 HOH A 303 O 165.9 82.0 70.8 80.8 79.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MTY RELATED DB: PDB DBREF 7N47 A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 7N47 A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 7N47 MET A -19 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 7N47 GLY A 51 UNP C3W5S0 LINKER SEQADV 7N47 GLY A 52 UNP C3W5S0 LINKER SEQADV 7N47 SER A 53 UNP C3W5S0 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET QQ4 A 206 41 HET 09Y A 207 28 HET SO4 A 208 5 HET SO4 A 209 5 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM 09Y 5-HYDROXY-N-[2-(2-METHOXYPYRIDIN-4-YL)ETHYL]-2-(2- HETNAM 2 09Y METHYLPHENYL)-6-OXO-1,6-DIHYDROPYRIMIDINE-4- HETNAM 3 09Y CARBOXAMIDE HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 5(O4 S 2-) FORMUL 7 QQ4 C36 H56 N6 O6 FORMUL 8 09Y C20 H20 N4 O4 FORMUL 11 HOH *16(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.29 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.12 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.12 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.17 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.17 LINK O ILE A 120 MN MN A 201 1555 1555 2.08 LINK MN MN A 201 O15 09Y A 207 1555 1555 2.35 LINK MN MN A 201 O13 09Y A 207 1555 1555 1.81 LINK MN MN A 202 O13 09Y A 207 1555 1555 2.56 LINK MN MN A 202 O10 09Y A 207 1555 1555 1.78 LINK MN MN A 202 O HOH A 302 1555 1555 2.27 LINK MN MN A 202 O HOH A 303 1555 1555 2.07 CRYST1 89.596 89.596 133.159 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007510 0.00000