HEADER TRANSFERASE 07-JUN-21 7N63 TITLE X-RAY STRUCTURE OF HCAN_0200, AN AMINOTRANSFERASE FROM HELICOBACTER TITLE 2 CANADENSIS IN COMPLEX WITH ITS EXTERNAL ALDIMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER CANADENSIS MIT 98-5491; SOURCE 3 ORGANISM_TAXID: 537970; SOURCE 4 GENE: HCAN_0204; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOTRANSFERASE, PYRIDOXYL PHOSPHATE, EXTERNAL ALDIMINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.A.GRIFFITHS,C.J.HEISDORF,J.B.THODEN,H.M.HOLDEN REVDAT 4 18-OCT-23 7N63 1 REMARK REVDAT 3 22-SEP-21 7N63 1 JRNL REVDAT 2 25-AUG-21 7N63 1 JRNL REVDAT 1 23-JUN-21 7N63 0 JRNL AUTH C.J.HEISDORF,W.A.GRIFFITHS,J.B.THODEN,H.M.HOLDEN JRNL TITL INVESTIGATION OF THE ENZYMES REQUIRED FOR THE BIOSYNTHESIS JRNL TITL 2 OF AN UNUSUAL FORMYLATED SUGAR IN THE EMERGING HUMAN JRNL TITL 3 PATHOGEN HELICOBACTER CANADENSIS. JRNL REF PROTEIN SCI. V. 30 2144 2021 JRNL REFN ESSN 1469-896X JRNL PMID 34379357 JRNL DOI 10.1002/PRO.4169 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 77505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4146 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE SET COUNT : 282 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 511 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.274 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3166 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2991 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4295 ; 1.782 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6985 ; 1.542 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 6.445 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;35.642 ;24.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;11.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.447 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3465 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 604 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7N63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81651 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5U1Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ENZYME INCUBATED WITH 1 MM PLP AND 5 REMARK 280 MM DTDP-3-AMINO-3,6-DIDEOXYGLUCOSE. PRECIPITANT = 15-18 % PEG REMARK 280 3350, 100 MM MGCL2, 100 MM MES, PH 6., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.52900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.52900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.50250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.38300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.50250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.38300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.52900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.50250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.38300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.52900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.50250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.38300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 547 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 844 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 963 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 362 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 663 O HOH A 742 1.71 REMARK 500 O HOH A 508 O HOH A 895 1.87 REMARK 500 OE1 GLU A 277 O HOH A 501 1.95 REMARK 500 O HOH A 627 O HOH A 795 1.96 REMARK 500 OE1 GLU A 254 O HOH A 502 2.02 REMARK 500 O PHE A 361 O HOH A 503 2.04 REMARK 500 O HOH A 868 O HOH A 872 2.04 REMARK 500 ND1 HIS A 64 O HOH A 504 2.09 REMARK 500 O HOH A 848 O HOH A 917 2.09 REMARK 500 O HOH A 533 O HOH A 562 2.13 REMARK 500 OE1 GLN A 251 O HOH A 505 2.13 REMARK 500 O HOH A 886 O HOH A 939 2.15 REMARK 500 O HOH A 922 O HOH A 928 2.15 REMARK 500 OD1 ASN A 150 O HOH A 506 2.15 REMARK 500 OG SER A 278 O HOH A 507 2.16 REMARK 500 O HOH A 800 O HOH A 882 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 350 CD GLU A 350 OE2 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 213 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 213 CB - CG - CD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 133 -1.14 69.85 REMARK 500 ASN A 212 56.29 -113.92 REMARK 500 TYR A 219 -6.74 81.64 REMARK 500 ASP A 290 53.82 -113.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 556 O REMARK 620 2 HOH A 556 O 87.8 REMARK 620 3 HOH A 696 O 85.7 95.7 REMARK 620 4 HOH A 696 O 95.7 85.7 178.1 REMARK 620 5 HOH A 737 O 172.5 90.2 87.3 91.4 REMARK 620 6 HOH A 737 O 90.2 172.5 91.4 87.3 92.6 REMARK 620 N 1 2 3 4 5 DBREF 7N63 A 1 361 UNP C5ZW06 C5ZW06_9HELI 1 361 SEQADV 7N63 LEU A 362 UNP C5ZW06 EXPRESSION TAG SEQADV 7N63 GLU A 363 UNP C5ZW06 EXPRESSION TAG SEQADV 7N63 HIS A 364 UNP C5ZW06 EXPRESSION TAG SEQADV 7N63 HIS A 365 UNP C5ZW06 EXPRESSION TAG SEQADV 7N63 HIS A 366 UNP C5ZW06 EXPRESSION TAG SEQADV 7N63 HIS A 367 UNP C5ZW06 EXPRESSION TAG SEQADV 7N63 HIS A 368 UNP C5ZW06 EXPRESSION TAG SEQADV 7N63 HIS A 369 UNP C5ZW06 EXPRESSION TAG SEQRES 1 A 369 MET ILE LYS PHE LEU ASP LEU HIS LYS ILE ASN GLN ARG SEQRES 2 A 369 PHE LYS SER GLU ILE ASP LEU ALA ILE ARG GLU VAL LEU SEQRES 3 A 369 GLU SER GLY TRP TYR LEU LEU GLY GLU LYS ASN LYS ALA SEQRES 4 A 369 PHE GLU GLU ASN PHE ALA LYS TYR CYS GLU THR LYS PHE SEQRES 5 A 369 SER VAL GLY CYS ALA ASN GLY LEU ASP ALA LEU HIS LEU SEQRES 6 A 369 ALA ILE ARG ALA TYR ASP PHE PRO LYS ASP SER GLU ILE SEQRES 7 A 369 ILE VAL PRO ALA ASN THR TYR ILE ALA SER ILE LEU ALA SEQRES 8 A 369 ILE SER ASN CYS GLY LEU LYS PRO ILE LEU VAL GLU PRO SEQRES 9 A 369 ASN LEU GLU THR TYR ASN ILE ASP ALA ASP LEU ILE GLU SEQRES 10 A 369 ALA LYS ILE THR GLU LYS THR LYS ALA ILE VAL VAL VAL SEQRES 11 A 369 HIS LEU TYR GLY GLN ALA VAL GLU MET GLU LYS ILE TRP SEQRES 12 A 369 GLU LEU ALA LYS LYS TYR ASN LEU LYS ILE ILE GLU ASP SEQRES 13 A 369 CYS ALA GLN ALA HIS GLY ALA ILE TYR GLN GLY LYS LYS SEQRES 14 A 369 VAL GLY ASN LEU GLY ASP ILE GLY CYS PHE SER PHE TYR SEQRES 15 A 369 PRO GLY LYS ASN LEU GLY ALA LEU GLY ASP GLY GLY CYS SEQRES 16 A 369 ILE THR THR ASN ASP GLU GLU MET ALA THR LYS ILE ARG SEQRES 17 A 369 ALA ILE ALA ASN TYR GLY SER LEU ILE LYS TYR GLU ASN SEQRES 18 A 369 ILE TYR LYS GLY LEU ASN SER ARG LEU ASP GLU ILE GLN SEQRES 19 A 369 ALA ALA ILE LEU ASP LEU LYS LEU GLN PHE LEU ASP ALA SEQRES 20 A 369 ASP ASN GLN GLN ARG ARG GLU ILE ALA LYS ILE TYR ARG SEQRES 21 A 369 GLU ASN ILE LYS ASN GLU LYS ILE ILE LEU PRO LYS PRO SEQRES 22 A 369 TYR GLU GLU GLU SER HIS VAL TRP HIS LEU PHE VAL ILE SEQRES 23 A 369 ARG THR LYS ASP ARG ASP LYS LEU GLN GLU TYR LEU LYS SEQRES 24 A 369 ILE LYS GLY ILE GLN THR LEU ILE HIS TYR PRO ILE PRO SEQRES 25 A 369 PRO HIS LYS GLN ASN ALA TYR LYS GLU TRP ASN ASN LEU SEQRES 26 A 369 SER PHE PRO ILE THR GLU LYS ILE HIS LYS GLU VAL LEU SEQRES 27 A 369 SER LEU PRO ILE SER PRO VAL MET ASN LYS GLU GLU ALA SEQRES 28 A 369 PHE TYR ILE ALA GLN ILE LEU ASN GLU PHE LEU GLU HIS SEQRES 29 A 369 HIS HIS HIS HIS HIS HET TQP A 401 55 HET MG A 402 1 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 8 HET CL A 409 1 HETNAM TQP (2R,3R,4S,5S,6R)-3,5-DIHYDROXY-4-{[(1E)-{3-HYDROXY-2- HETNAM 2 TQP METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4- HETNAM 3 TQP YL}METHYLIDENE]AMINO}-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL HETNAM 4 TQP [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4- HETNAM 5 TQP DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL HETNAM 6 TQP DIHYDROGEN DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 TQP C24 H35 N4 O19 P3 FORMUL 3 MG MG 2+ FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 CL CL 1- FORMUL 11 HOH *511(H2 O) HELIX 1 AA1 ASP A 6 ARG A 13 1 8 HELIX 2 AA2 PHE A 14 GLY A 29 1 16 HELIX 3 AA3 GLY A 34 GLU A 49 1 16 HELIX 4 AA4 ASN A 58 ASP A 71 1 14 HELIX 5 AA5 TYR A 85 CYS A 95 1 11 HELIX 6 AA6 ASP A 112 ILE A 120 5 9 HELIX 7 AA7 LEU A 132 GLN A 135 5 4 HELIX 8 AA8 MET A 139 TYR A 149 1 11 HELIX 9 AA9 ASP A 200 ASN A 212 1 13 HELIX 10 AB1 ASP A 231 GLN A 243 1 13 HELIX 11 AB2 PHE A 244 ILE A 263 1 20 HELIX 12 AB3 GLU A 275 HIS A 279 5 5 HELIX 13 AB4 ASP A 290 LYS A 301 1 12 HELIX 14 AB5 PRO A 312 ASN A 323 5 12 HELIX 15 AB6 PHE A 327 GLU A 336 1 10 HELIX 16 AB7 ASN A 347 GLU A 360 1 14 SHEET 1 AA1 7 PHE A 52 CYS A 56 0 SHEET 2 AA1 7 GLY A 194 THR A 198 -1 O GLY A 194 N CYS A 56 SHEET 3 AA1 7 ILE A 176 SER A 180 -1 N PHE A 179 O CYS A 195 SHEET 4 AA1 7 LYS A 152 ASP A 156 1 N GLU A 155 O ILE A 176 SHEET 5 AA1 7 THR A 124 VAL A 130 1 N VAL A 129 O ASP A 156 SHEET 6 AA1 7 GLU A 77 PRO A 81 1 N ILE A 79 O VAL A 128 SHEET 7 AA1 7 LYS A 98 VAL A 102 1 O ILE A 100 N ILE A 78 SHEET 1 AA2 2 ILE A 164 TYR A 165 0 SHEET 2 AA2 2 LYS A 168 LYS A 169 -1 O LYS A 168 N TYR A 165 SHEET 1 AA3 2 PHE A 284 ARG A 287 0 SHEET 2 AA3 2 VAL A 337 LEU A 340 -1 O LEU A 338 N ILE A 286 LINK MG MG A 402 O HOH A 556 1555 1555 2.01 LINK MG MG A 402 O HOH A 556 1555 4555 2.01 LINK MG MG A 402 O HOH A 696 1555 1555 2.10 LINK MG MG A 402 O HOH A 696 1555 4555 2.10 LINK MG MG A 402 O HOH A 737 1555 1555 2.06 LINK MG MG A 402 O HOH A 737 1555 4555 2.06 CISPEP 1 HIS A 308 TYR A 309 0 5.39 CRYST1 61.005 150.766 91.058 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016392 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010982 0.00000