HEADER VIRAL PROTEIN/INHIBITOR 07-JUN-21 7N68 TITLE THE CRYSTAL STRUCTURE OF WILD TYPE PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988288 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN,POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2,RNA-DIRECTED RNA COMPND 5 POLYMERASE SUBUNIT P2; COMPND 6 EC: 3.1.-.-,3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 GENE: PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 4 20-DEC-23 7N68 1 JRNL REVDAT 3 18-OCT-23 7N68 1 REMARK REVDAT 2 11-OCT-23 7N68 1 JRNL REVDAT 1 08-JUN-22 7N68 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 12486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7200 - 3.5900 0.93 3054 148 0.1716 0.1754 REMARK 3 2 3.5900 - 2.8500 0.96 2999 161 0.2339 0.2821 REMARK 3 3 2.8500 - 2.4900 0.93 2859 179 0.2816 0.3310 REMARK 3 4 2.4900 - 2.2600 0.95 2954 132 0.3022 0.3119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.314 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.844 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1575 REMARK 3 ANGLE : 0.698 2131 REMARK 3 CHIRALITY : 0.044 221 REMARK 3 PLANARITY : 0.005 270 REMARK 3 DIHEDRAL : 9.909 232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4288 23.7688 7.1092 REMARK 3 T TENSOR REMARK 3 T11: 0.6391 T22: 0.4605 REMARK 3 T33: 0.5446 T12: -0.0155 REMARK 3 T13: -0.2234 T23: 0.0678 REMARK 3 L TENSOR REMARK 3 L11: 5.7362 L22: 1.6066 REMARK 3 L33: 4.3132 L12: -0.5072 REMARK 3 L13: -1.4622 L23: 1.8227 REMARK 3 S TENSOR REMARK 3 S11: 0.1033 S12: 0.9636 S13: 0.5400 REMARK 3 S21: -0.4499 S22: -0.2537 S23: -0.0292 REMARK 3 S31: -0.5369 S32: -0.4613 S33: 0.1198 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6781 23.8373 21.9842 REMARK 3 T TENSOR REMARK 3 T11: 0.6605 T22: 0.4570 REMARK 3 T33: 0.5585 T12: -0.0290 REMARK 3 T13: -0.1610 T23: -0.2110 REMARK 3 L TENSOR REMARK 3 L11: 5.5649 L22: 1.7864 REMARK 3 L33: 3.2785 L12: -0.3617 REMARK 3 L13: -0.7357 L23: 0.7487 REMARK 3 S TENSOR REMARK 3 S11: -0.1319 S12: -0.3260 S13: 0.2534 REMARK 3 S21: 0.5212 S22: -0.1736 S23: -0.0142 REMARK 3 S31: -0.3495 S32: -0.1823 S33: 0.2401 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9257 31.2662 27.6925 REMARK 3 T TENSOR REMARK 3 T11: 1.1908 T22: 0.6083 REMARK 3 T33: 0.6383 T12: -0.0887 REMARK 3 T13: -0.2864 T23: -0.1457 REMARK 3 L TENSOR REMARK 3 L11: 5.2147 L22: 4.4478 REMARK 3 L33: 6.3015 L12: -0.4377 REMARK 3 L13: -3.4823 L23: 2.0945 REMARK 3 S TENSOR REMARK 3 S11: 0.5888 S12: -0.4676 S13: 1.0072 REMARK 3 S21: 0.1419 S22: -0.2943 S23: -0.1533 REMARK 3 S31: -1.3359 S32: 0.2041 S33: -0.2040 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9621 21.7140 20.7555 REMARK 3 T TENSOR REMARK 3 T11: 0.6787 T22: 0.4655 REMARK 3 T33: 0.6098 T12: -0.1958 REMARK 3 T13: -0.2667 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 4.8005 L22: 0.7196 REMARK 3 L33: 6.5128 L12: -0.4288 REMARK 3 L13: -2.5770 L23: -0.1824 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.4270 S13: 0.6163 REMARK 3 S21: 0.3677 S22: -0.2090 S23: -0.1980 REMARK 3 S31: -0.7518 S32: 0.6941 S33: 0.0981 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 46.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 45.16500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.34500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 45.16500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.34500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 45.16500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.34500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 45.16500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.34500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 45.16500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.34500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 45.16500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.34500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 45.16500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.34500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 45.16500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -343.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 73 CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 139 CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 158 CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN A 202 O3 0VL A 204 1.53 REMARK 500 O HOH A 320 O HOH A 322 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -154.70 -92.79 REMARK 500 LYS A 139 -57.06 60.31 REMARK 500 SER A 140 104.32 -58.64 REMARK 500 THR A 162 -54.54 68.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 203 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 99.7 REMARK 620 3 GLU A 119 OE2 167.7 89.9 REMARK 620 4 ILE A 120 O 82.8 95.7 88.6 REMARK 620 5 0VL A 204 O4 109.2 97.3 76.9 160.4 REMARK 620 6 0VL A 204 O5 79.3 178.1 91.3 85.8 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 94.9 REMARK 620 3 0VL A 204 O4 112.1 84.4 REMARK 620 4 HOH A 301 O 107.5 99.1 139.8 REMARK 620 5 HOH A 302 O 176.1 88.5 66.3 73.7 REMARK 620 N 1 2 3 4 DBREF 7N68 A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 7N68 A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 7N68 MET A -19 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 7N68 GLY A 51 UNP C3W5S0 LINKER SEQADV 7N68 GLY A 52 UNP C3W5S0 LINKER SEQADV 7N68 SER A 53 UNP C3W5S0 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET QQ4 A 203 41 HET 0VL A 204 33 HET SO4 A 205 5 HET SO4 A 206 5 HETNAM MN MANGANESE (II) ION HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM 0VL BENZYL {2-[(5S)-5-HYDROXY-4-OXO-6-{[2-(PYRIDIN-4-YL) HETNAM 2 0VL ETHYL]CARBAMOYL}-4,5-DIHYDROPYRIMIDIN-2-YL]PROPAN-2- HETNAM 3 0VL YL}CARBAMATE HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 QQ4 C36 H56 N6 O6 FORMUL 5 0VL C23 H25 N5 O5 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *22(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLU A 195 1 9 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.21 LINK OE2 GLU A 80 MN MN A 202 1555 1555 2.59 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.10 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.13 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.21 LINK O ILE A 120 MN MN A 201 1555 1555 2.06 LINK MN MN A 201 O4 0VL A 204 1555 1555 2.06 LINK MN MN A 201 O5 0VL A 204 1555 1555 2.01 LINK MN MN A 202 O4 0VL A 204 1555 1555 2.36 LINK MN MN A 202 O HOH A 301 1555 1555 2.46 LINK MN MN A 202 O HOH A 302 1555 1555 2.42 CRYST1 90.330 90.330 132.690 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007536 0.00000