HEADER HYDROLASE 08-JUN-21 7N6N TITLE SARS-COV-2 MAIN PROTEASE C145S MUTANT IN COMPLEX WITH N AND C-TERMINAL TITLE 2 RESIDUES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3259-3569; COMPND 5 SYNONYM: 3CL-PRO, 3CLP, MAIN PROTEASE, MPRO, NON-STRUCTURAL PROTEIN COMPND 6 5, NSP5, SARS CORONAVIRUS MAIN PROTEINASE; COMPND 7 EC: 3.4.22.69; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 3C-LIKE PROTEINASE; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 3259-3263); COMPND 14 SYNONYM: 3CL-PRO, 3CLP, MAIN PROTEASE, MPRO, NON-STRUCTURAL PROTEIN COMPND 15 5, NSP5, SARS CORONAVIRUS MAIN PROTEINASE; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 11 2; SOURCE 12 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 13 ORGANISM_TAXID: 2697049; SOURCE 14 GENE: REP, 1A-1B; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MPRO, MAIN PROTEASE, COVID-19, SARS-COV-2, 3CL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.D.NOSKE,A.M.NAKAMURA,V.O.GAWRILJUK,G.M.A.LIMA,A.C.M.ZERI, AUTHOR 2 A.F.Z.NASCIMENTO,R.S.FERNANDES,G.OLIVA,A.S.GODOY REVDAT 4 18-OCT-23 7N6N 1 REMARK REVDAT 3 28-JUL-21 7N6N 1 JRNL REVDAT 2 07-JUL-21 7N6N 1 JRNL REVDAT 1 16-JUN-21 7N6N 0 SPRSDE 16-JUN-21 7N6N 7KVG JRNL AUTH G.D.NOSKE,A.M.NAKAMURA,V.O.GAWRILJUK,R.S.FERNANDES, JRNL AUTH 2 G.M.A.LIMA,H.V.D.ROSA,H.D.PEREIRA,A.C.M.ZERI, JRNL AUTH 3 A.F.Z.NASCIMENTO,M.C.L.C.FREIRE,D.FEARON,A.DOUANGAMATH, JRNL AUTH 4 F.VON DELFT,G.OLIVA,A.S.GODOY JRNL TITL A CRYSTALLOGRAPHIC SNAPSHOT OF SARS-COV-2 MAIN PROTEASE JRNL TITL 2 MATURATION PROCESS. JRNL REF J.MOL.BIOL. V. 433 67118 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 34174328 JRNL DOI 10.1016/J.JMB.2021.167118 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.2300 - 6.0300 0.99 1262 143 0.1720 0.2121 REMARK 3 2 6.0300 - 4.7900 1.00 1236 141 0.1736 0.2380 REMARK 3 3 4.7900 - 4.1800 1.00 1225 133 0.1572 0.1905 REMARK 3 4 4.1800 - 3.8000 1.00 1238 139 0.1714 0.2304 REMARK 3 5 3.8000 - 3.5300 1.00 1229 137 0.1941 0.2946 REMARK 3 6 3.5300 - 3.3200 0.99 1212 132 0.2159 0.2824 REMARK 3 7 3.3200 - 3.1500 1.00 1223 134 0.2432 0.3026 REMARK 3 8 3.1500 - 3.0200 0.99 1227 139 0.2652 0.2909 REMARK 3 9 3.0200 - 2.9000 0.99 1200 139 0.2887 0.3913 REMARK 3 10 2.9000 - 2.8000 0.98 1207 127 0.2941 0.3073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 21.4768 4.5661 19.3795 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.1763 REMARK 3 T33: 0.2738 T12: 0.0031 REMARK 3 T13: 0.0239 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.7330 L22: 0.2372 REMARK 3 L33: 0.8800 L12: 0.0953 REMARK 3 L13: -0.2098 L23: 0.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: 0.0415 S13: 0.0384 REMARK 3 S21: -0.0220 S22: 0.0003 S23: -0.0023 REMARK 3 S31: -0.1115 S32: -0.0293 S33: -0.0744 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS SIRUS REMARK 200 BEAMLINE : MANACA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.32363 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 60.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.27900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 7KFI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE/CITRATE, PH 5.5, 20% REMARK 280 V/V PEG SMEAR HIGH (BCS SCREEN A08), VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.66550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 ALA A -6 REMARK 465 MET A -5 REMARK 465 SER A -4 REMARK 465 ALA A -3 REMARK 465 VAL A -2 REMARK 465 LEU A -1 REMARK 465 GLN A 0 REMARK 465 GLY B -7 REMARK 465 ALA B -6 REMARK 465 MET B -5 REMARK 465 SER B -4 REMARK 465 ALA B -3 REMARK 465 VAL B -2 REMARK 465 LEU B -1 REMARK 465 GLN B 0 REMARK 465 GLY C -7 REMARK 465 ALA C -6 REMARK 465 MET C -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 ASN B 277 CG OD1 ND2 REMARK 470 GLN B 306 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 240 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 127 NH2 ARG B 4 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 97 CE LYS A 97 NZ 0.218 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 97 CD - CE - NZ ANGL. DEV. = -31.4 DEGREES REMARK 500 LEU A 232 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 GLU A 240 C - N - CA ANGL. DEV. = -17.3 DEGREES REMARK 500 LEU B 58 CB - CG - CD2 ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG B 279 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG B 279 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG B 279 CD - NE - CZ ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -122.72 56.59 REMARK 500 ASP A 48 70.77 -108.00 REMARK 500 MET A 49 20.74 -153.26 REMARK 500 ASN A 51 86.49 -163.86 REMARK 500 ASN A 84 -117.43 55.75 REMARK 500 LYS A 137 86.03 -64.09 REMARK 500 ASP A 153 -95.79 -112.02 REMARK 500 TYR A 154 60.34 -105.89 REMARK 500 ASP A 155 14.35 58.53 REMARK 500 HIS A 164 -51.95 -127.03 REMARK 500 LEU A 177 1.43 -66.98 REMARK 500 ARG A 217 32.92 -146.23 REMARK 500 ASP B 33 -119.77 52.43 REMARK 500 ASN B 84 -107.36 57.73 REMARK 500 TYR B 154 -107.50 53.64 REMARK 500 HIS B 164 -55.93 -121.05 REMARK 500 ASN B 238 68.61 31.70 REMARK 500 VAL B 303 116.30 82.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 270 LEU A 271 149.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N6N A -4 306 UNP P0DTD1 R1AB_SARS2 3259 3569 DBREF 7N6N B -4 306 UNP P0DTD1 R1AB_SARS2 3259 3569 DBREF 7N6N C -4 0 UNP P0DTD1 R1AB_SARS2 3259 3263 SEQADV 7N6N GLY A -7 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N ALA A -6 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N MET A -5 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N SER A 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQADV 7N6N GLY B -7 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N ALA B -6 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N MET B -5 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N SER B 145 UNP P0DTD1 CYS 3408 ENGINEERED MUTATION SEQADV 7N6N GLY C -7 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N ALA C -6 UNP P0DTD1 EXPRESSION TAG SEQADV 7N6N MET C -5 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 314 GLY ALA MET SER ALA VAL LEU GLN SER GLY PHE ARG LYS SEQRES 2 A 314 MET ALA PHE PRO SER GLY LYS VAL GLU GLY CYS MET VAL SEQRES 3 A 314 GLN VAL THR CYS GLY THR THR THR LEU ASN GLY LEU TRP SEQRES 4 A 314 LEU ASP ASP VAL VAL TYR CYS PRO ARG HIS VAL ILE CYS SEQRES 5 A 314 THR SER GLU ASP MET LEU ASN PRO ASN TYR GLU ASP LEU SEQRES 6 A 314 LEU ILE ARG LYS SER ASN HIS ASN PHE LEU VAL GLN ALA SEQRES 7 A 314 GLY ASN VAL GLN LEU ARG VAL ILE GLY HIS SER MET GLN SEQRES 8 A 314 ASN CYS VAL LEU LYS LEU LYS VAL ASP THR ALA ASN PRO SEQRES 9 A 314 LYS THR PRO LYS TYR LYS PHE VAL ARG ILE GLN PRO GLY SEQRES 10 A 314 GLN THR PHE SER VAL LEU ALA CYS TYR ASN GLY SER PRO SEQRES 11 A 314 SER GLY VAL TYR GLN CYS ALA MET ARG PRO ASN PHE THR SEQRES 12 A 314 ILE LYS GLY SER PHE LEU ASN GLY SER SER GLY SER VAL SEQRES 13 A 314 GLY PHE ASN ILE ASP TYR ASP CYS VAL SER PHE CYS TYR SEQRES 14 A 314 MET HIS HIS MET GLU LEU PRO THR GLY VAL HIS ALA GLY SEQRES 15 A 314 THR ASP LEU GLU GLY ASN PHE TYR GLY PRO PHE VAL ASP SEQRES 16 A 314 ARG GLN THR ALA GLN ALA ALA GLY THR ASP THR THR ILE SEQRES 17 A 314 THR VAL ASN VAL LEU ALA TRP LEU TYR ALA ALA VAL ILE SEQRES 18 A 314 ASN GLY ASP ARG TRP PHE LEU ASN ARG PHE THR THR THR SEQRES 19 A 314 LEU ASN ASP PHE ASN LEU VAL ALA MET LYS TYR ASN TYR SEQRES 20 A 314 GLU PRO LEU THR GLN ASP HIS VAL ASP ILE LEU GLY PRO SEQRES 21 A 314 LEU SER ALA GLN THR GLY ILE ALA VAL LEU ASP MET CYS SEQRES 22 A 314 ALA SER LEU LYS GLU LEU LEU GLN ASN GLY MET ASN GLY SEQRES 23 A 314 ARG THR ILE LEU GLY SER ALA LEU LEU GLU ASP GLU PHE SEQRES 24 A 314 THR PRO PHE ASP VAL VAL ARG GLN CYS SER GLY VAL THR SEQRES 25 A 314 PHE GLN SEQRES 1 B 314 GLY ALA MET SER ALA VAL LEU GLN SER GLY PHE ARG LYS SEQRES 2 B 314 MET ALA PHE PRO SER GLY LYS VAL GLU GLY CYS MET VAL SEQRES 3 B 314 GLN VAL THR CYS GLY THR THR THR LEU ASN GLY LEU TRP SEQRES 4 B 314 LEU ASP ASP VAL VAL TYR CYS PRO ARG HIS VAL ILE CYS SEQRES 5 B 314 THR SER GLU ASP MET LEU ASN PRO ASN TYR GLU ASP LEU SEQRES 6 B 314 LEU ILE ARG LYS SER ASN HIS ASN PHE LEU VAL GLN ALA SEQRES 7 B 314 GLY ASN VAL GLN LEU ARG VAL ILE GLY HIS SER MET GLN SEQRES 8 B 314 ASN CYS VAL LEU LYS LEU LYS VAL ASP THR ALA ASN PRO SEQRES 9 B 314 LYS THR PRO LYS TYR LYS PHE VAL ARG ILE GLN PRO GLY SEQRES 10 B 314 GLN THR PHE SER VAL LEU ALA CYS TYR ASN GLY SER PRO SEQRES 11 B 314 SER GLY VAL TYR GLN CYS ALA MET ARG PRO ASN PHE THR SEQRES 12 B 314 ILE LYS GLY SER PHE LEU ASN GLY SER SER GLY SER VAL SEQRES 13 B 314 GLY PHE ASN ILE ASP TYR ASP CYS VAL SER PHE CYS TYR SEQRES 14 B 314 MET HIS HIS MET GLU LEU PRO THR GLY VAL HIS ALA GLY SEQRES 15 B 314 THR ASP LEU GLU GLY ASN PHE TYR GLY PRO PHE VAL ASP SEQRES 16 B 314 ARG GLN THR ALA GLN ALA ALA GLY THR ASP THR THR ILE SEQRES 17 B 314 THR VAL ASN VAL LEU ALA TRP LEU TYR ALA ALA VAL ILE SEQRES 18 B 314 ASN GLY ASP ARG TRP PHE LEU ASN ARG PHE THR THR THR SEQRES 19 B 314 LEU ASN ASP PHE ASN LEU VAL ALA MET LYS TYR ASN TYR SEQRES 20 B 314 GLU PRO LEU THR GLN ASP HIS VAL ASP ILE LEU GLY PRO SEQRES 21 B 314 LEU SER ALA GLN THR GLY ILE ALA VAL LEU ASP MET CYS SEQRES 22 B 314 ALA SER LEU LYS GLU LEU LEU GLN ASN GLY MET ASN GLY SEQRES 23 B 314 ARG THR ILE LEU GLY SER ALA LEU LEU GLU ASP GLU PHE SEQRES 24 B 314 THR PRO PHE ASP VAL VAL ARG GLN CYS SER GLY VAL THR SEQRES 25 B 314 PHE GLN SEQRES 1 C 8 GLY ALA MET SER ALA VAL LEU GLN HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 GLY A 215 1 16 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLN A 273 1 14 HELIX 10 AB1 THR A 292 SER A 301 1 10 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 ASN B 53 LYS B 61 1 9 HELIX 14 AB5 SER B 62 PHE B 66 5 5 HELIX 15 AB6 ILE B 200 GLY B 215 1 16 HELIX 16 AB7 THR B 226 TYR B 237 1 12 HELIX 17 AB8 THR B 243 LEU B 250 1 8 HELIX 18 AB9 LEU B 250 GLY B 258 1 9 HELIX 19 AC1 ALA B 260 GLY B 275 1 16 HELIX 20 AC2 THR B 292 CYS B 300 1 9 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O GLY A 29 N VAL A 18 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 3 TYR A 101 PHE A 103 0 SHEET 2 AA2 3 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 3 HIS A 172 THR A 175 -1 O THR A 175 N MET A 162 SHEET 1 AA3 5 SER A 121 ALA A 129 0 SHEET 2 AA3 5 THR A 111 TYR A 118 -1 N ALA A 116 O SER A 123 SHEET 3 AA3 5 VAL A 148 ILE A 152 -1 O PHE A 150 N SER A 113 SHEET 4 AA3 5 VAL A 157 GLU A 166 -1 O TYR A 161 N GLY A 149 SHEET 5 AA3 5 VAL C -2 LEU C -1 -1 O VAL C -2 N GLU A 166 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 LEU B 67 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 89 N VAL B 36 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O THR B 175 N MET B 162 CRYST1 58.624 79.331 62.805 90.00 106.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017058 0.000000 0.005043 0.00000 SCALE2 0.000000 0.012605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016604 0.00000