data_7N7D # _entry.id 7N7D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7N7D pdb_00007n7d 10.2210/pdb7n7d/pdb WWPDB D_1000257469 ? ? BMRB 30923 ? 10.13018/BMR30923 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-11-03 2 'Structure model' 1 1 2021-11-24 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7N7D _pdbx_database_status.recvd_initial_deposition_date 2021-06-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of the MYC promoter G-quadruplex in complex with berberine: conformer A' _pdbx_database_related.db_id 30923 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Dickerhoff, J.' 1 0000-0002-3197-9472 'Yang, D.' 2 0000-0001-7489-7111 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first 16205 _citation.page_last 16212 _citation.title 'Berberine Molecular Recognition of the Parallel MYC G-Quadruplex in Solution.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.1c01508 _citation.pdbx_database_id_PubMed 34677968 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dickerhoff, J.' 1 ? primary 'Brundridge, N.' 2 ? primary 'McLuckey, S.A.' 3 ? primary 'Yang, D.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Myc2345 7033.523 1 ? ? ? ? 2 non-polymer syn BERBERINE 336.361 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DG) (DA)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGAGGGTGGGTAGGGTGGGGAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name BERBERINE _pdbx_entity_nonpoly.comp_id BER # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DG n 1 21 DA n 1 22 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 4 1 DT DT A . n A 1 2 DG 2 5 2 DG DG A . n A 1 3 DA 3 6 3 DA DA A . n A 1 4 DG 4 7 4 DG DG A . n A 1 5 DG 5 8 5 DG DG A . n A 1 6 DG 6 9 6 DG DG A . n A 1 7 DT 7 10 7 DT DT A . n A 1 8 DG 8 11 8 DG DG A . n A 1 9 DG 9 12 9 DG DG A . n A 1 10 DG 10 13 10 DG DG A . n A 1 11 DT 11 14 11 DT DT A . n A 1 12 DA 12 15 12 DA DA A . n A 1 13 DG 13 16 13 DG DG A . n A 1 14 DG 14 17 14 DG DG A . n A 1 15 DG 15 18 15 DG DG A . n A 1 16 DT 16 19 16 DT DT A . n A 1 17 DG 17 20 17 DG DG A . n A 1 18 DG 18 21 18 DG DG A . n A 1 19 DG 19 22 19 DG DG A . n A 1 20 DG 20 23 20 DG DG A . n A 1 21 DA 21 24 21 DA DA A . n A 1 22 DA 22 25 22 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BER 1 101 23 BER LIG A . C 2 BER 1 102 24 BER LIG A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7N7D _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7N7D _struct.title 'Solution structure of the MYC promoter G-quadruplex in complex with berberine: conformer A' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7N7D _struct_keywords.text 'G-QUADRUPLEX DNA, DRUG-DNA COMPLEX, BERBERINE, CANCER, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7N7D _struct_ref.pdbx_db_accession 7N7D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7N7D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7N7D _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 25 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 25 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1140 ? 1 MORE 17 ? 1 'SSA (A^2)' 4390 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 7 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 8 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 8 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 9 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 9 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 9 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 11 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 11 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 17 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 17 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 18 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 18 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.23 122.90 -3.67 0.60 N 2 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.10 108.30 2.80 0.30 N 3 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.69 117.00 -3.31 0.50 N 4 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.43 117.70 3.73 0.50 N 5 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.31 118.60 -5.29 0.60 N 6 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.43 108.30 2.13 0.30 N 7 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.03 108.30 2.73 0.30 N 8 1 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.17 122.90 -3.73 0.60 N 9 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.16 108.30 2.86 0.30 N 10 1 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.93 108.30 2.63 0.30 N 11 1 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.16 122.90 -3.74 0.60 N 12 1 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.91 117.00 -3.09 0.50 N 13 1 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.26 117.70 3.56 0.50 N 14 1 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.27 118.60 -5.33 0.60 N 15 1 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.58 108.30 2.28 0.30 N 16 1 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.20 122.90 -3.70 0.60 N 17 1 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 111.44 108.30 3.14 0.30 N 18 1 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.48 108.30 3.18 0.30 N 19 1 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 112.30 108.30 4.00 0.30 N 20 1 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.19 108.30 1.89 0.30 N 21 1 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.73 117.00 -3.27 0.50 N 22 1 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.39 117.70 3.69 0.50 N 23 1 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.00 118.60 -5.60 0.60 N 24 1 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.68 117.00 -3.32 0.50 N 25 1 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.41 117.70 3.71 0.50 N 26 1 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 113.14 118.60 -5.46 0.60 N 27 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.38 108.30 2.08 0.30 N 28 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.32 122.90 -4.58 0.60 N 29 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.92 108.30 2.62 0.30 N 30 2 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.60 117.00 -3.40 0.50 N 31 2 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.46 117.70 3.76 0.50 N 32 2 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.27 118.60 -5.33 0.60 N 33 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.40 108.30 2.10 0.30 N 34 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.28 108.30 1.98 0.30 N 35 2 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.20 122.90 -3.70 0.60 N 36 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.98 108.30 2.68 0.30 N 37 2 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.11 108.30 1.81 0.30 N 38 2 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.14 122.90 -3.76 0.60 N 39 2 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.85 117.00 -3.15 0.50 N 40 2 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.28 117.70 3.58 0.50 N 41 2 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.15 118.60 -5.45 0.60 N 42 2 N3 A DG 16 ? ? C2 A DG 16 ? ? N2 A DG 16 ? ? 115.62 119.90 -4.28 0.70 N 43 2 "C3'" A DG 16 ? ? "O3'" A DG 16 ? ? P A DG 17 ? ? 127.01 119.70 7.31 1.20 Y 44 2 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.31 108.30 2.01 0.30 N 45 2 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.58 108.30 2.28 0.30 N 46 2 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.18 122.90 -3.72 0.60 N 47 2 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.46 108.30 2.16 0.30 N 48 2 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.18 108.30 2.88 0.30 N 49 2 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.92 108.30 3.62 0.30 N 50 2 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.13 108.30 1.83 0.30 N 51 2 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.69 117.00 -3.31 0.50 N 52 2 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.38 117.70 3.68 0.50 N 53 2 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.15 118.60 -5.45 0.60 N 54 2 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.62 117.00 -3.38 0.50 N 55 2 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.51 117.70 3.81 0.50 N 56 2 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 113.07 118.60 -5.53 0.60 N 57 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.10 108.30 4.80 0.30 N 58 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.24 122.90 -3.66 0.60 N 59 3 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.67 117.00 -3.33 0.50 N 60 3 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.25 117.70 3.55 0.50 N 61 3 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.33 118.60 -5.27 0.60 N 62 3 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.43 108.30 2.13 0.30 N 63 3 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.20 122.90 -3.70 0.60 N 64 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.88 108.30 2.58 0.30 N 65 3 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.08 122.90 -3.82 0.60 N 66 3 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.89 117.00 -3.11 0.50 N 67 3 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.35 117.70 3.65 0.50 N 68 3 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.22 118.60 -5.38 0.60 N 69 3 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.89 108.30 2.59 0.30 N 70 3 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 111.33 108.30 3.03 0.30 N 71 3 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.20 122.90 -3.70 0.60 N 72 3 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.96 108.30 2.66 0.30 N 73 3 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 110.42 108.30 2.12 0.30 N 74 3 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.55 108.30 3.25 0.30 N 75 3 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.82 117.00 -3.18 0.50 N 76 3 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.41 117.70 3.71 0.50 N 77 3 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.01 118.60 -5.59 0.60 N 78 3 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.70 117.00 -3.30 0.50 N 79 3 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.45 117.70 3.75 0.50 N 80 3 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 113.19 118.60 -5.41 0.60 N 81 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.21 108.30 1.91 0.30 N 82 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.13 122.90 -3.77 0.60 N 83 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.06 108.30 2.76 0.30 N 84 4 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.65 117.00 -3.35 0.50 N 85 4 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.49 117.70 3.79 0.50 N 86 4 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.14 118.60 -5.46 0.60 N 87 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.60 108.30 2.30 0.30 N 88 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.60 108.30 2.30 0.30 N 89 4 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.20 122.90 -3.70 0.60 N 90 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.31 108.30 3.01 0.30 N 91 4 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.52 108.30 3.22 0.30 N 92 4 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.14 122.90 -3.76 0.60 N 93 4 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.87 117.00 -3.13 0.50 N 94 4 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.38 117.70 3.68 0.50 N 95 4 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.19 118.60 -5.41 0.60 N 96 4 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.34 108.30 3.04 0.30 N 97 4 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.70 108.30 2.40 0.30 N 98 4 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.35 108.30 2.05 0.30 N 99 4 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.19 122.90 -3.71 0.60 N 100 4 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 111.53 108.30 3.23 0.30 N 101 4 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.34 108.30 3.04 0.30 N 102 4 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.51 108.30 3.21 0.30 N 103 4 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.66 108.30 2.36 0.30 N 104 4 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.81 117.00 -3.19 0.50 N 105 4 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.41 117.70 3.71 0.50 N 106 4 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.07 118.60 -5.53 0.60 N 107 4 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.71 117.00 -3.29 0.50 N 108 4 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.40 117.70 3.70 0.50 N 109 4 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 113.01 118.60 -5.59 0.60 N 110 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.22 122.90 -3.68 0.60 N 111 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.48 108.30 2.18 0.30 N 112 5 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.75 117.00 -3.25 0.50 N 113 5 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.43 117.70 3.73 0.50 N 114 5 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.22 118.60 -5.38 0.60 N 115 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.61 108.30 2.31 0.30 N 116 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.88 108.30 2.58 0.30 N 117 5 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.01 108.30 2.71 0.30 N 118 5 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.23 122.90 -3.67 0.60 N 119 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.73 108.30 2.43 0.30 N 120 5 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.59 108.30 3.29 0.30 N 121 5 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.06 122.90 -3.84 0.60 N 122 5 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.91 117.00 -3.09 0.50 N 123 5 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.36 117.70 3.66 0.50 N 124 5 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.25 118.60 -5.35 0.60 N 125 5 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.18 108.30 2.88 0.30 N 126 5 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.42 108.30 2.12 0.30 N 127 5 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.28 108.30 1.98 0.30 N 128 5 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.12 122.90 -3.78 0.60 N 129 5 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 111.36 108.30 3.06 0.30 N 130 5 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.41 108.30 3.11 0.30 N 131 5 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.57 108.30 3.27 0.30 N 132 5 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.81 117.00 -3.19 0.50 N 133 5 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.42 117.70 3.72 0.50 N 134 5 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.11 118.60 -5.49 0.60 N 135 5 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.98 108.30 2.68 0.30 N 136 5 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.60 117.00 -3.40 0.50 N 137 5 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.42 117.70 3.72 0.50 N 138 5 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 112.98 118.60 -5.62 0.60 N 139 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.21 122.90 -3.69 0.60 N 140 6 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.15 108.30 1.85 0.30 N 141 6 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.67 117.00 -3.33 0.50 N 142 6 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.41 117.70 3.71 0.50 N 143 6 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.34 118.60 -5.26 0.60 N 144 6 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.39 108.30 2.09 0.30 N 145 6 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.04 122.90 -3.86 0.60 N 146 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.46 108.30 2.16 0.30 N 147 6 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.39 108.30 2.09 0.30 N 148 6 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.94 117.00 -3.06 0.50 N 149 6 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.31 117.70 3.61 0.50 N 150 6 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.33 118.60 -5.27 0.60 N 151 6 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.83 108.30 2.53 0.30 N 152 6 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.78 108.30 2.48 0.30 N 153 6 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.08 122.90 -3.82 0.60 N 154 6 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.59 108.30 3.29 0.30 N 155 6 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 111.50 108.30 3.20 0.30 N 156 6 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.74 117.00 -3.26 0.50 N 157 6 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.49 117.70 3.79 0.50 N 158 6 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.06 118.60 -5.54 0.60 N 159 6 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.53 108.30 2.23 0.30 N 160 6 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.66 117.00 -3.34 0.50 N 161 6 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.38 117.70 3.68 0.50 N 162 6 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 112.98 118.60 -5.62 0.60 N 163 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.66 108.30 2.36 0.30 N 164 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.08 122.90 -3.82 0.60 N 165 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.44 108.30 2.14 0.30 N 166 7 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.64 117.00 -3.36 0.50 N 167 7 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.43 117.70 3.73 0.50 N 168 7 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.47 118.60 -5.13 0.60 N 169 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.67 108.30 2.37 0.30 N 170 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.11 108.30 1.81 0.30 N 171 7 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.41 108.30 2.11 0.30 N 172 7 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.08 122.90 -3.82 0.60 N 173 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.83 108.30 2.53 0.30 N 174 7 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.62 108.30 2.32 0.30 N 175 7 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.20 122.90 -3.70 0.60 N 176 7 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.80 117.00 -3.20 0.50 N 177 7 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.40 117.70 3.70 0.50 N 178 7 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.27 118.60 -5.33 0.60 N 179 7 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.05 108.30 2.75 0.30 N 180 7 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.46 108.30 2.16 0.30 N 181 7 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.07 122.90 -3.83 0.60 N 182 7 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.54 108.30 2.24 0.30 N 183 7 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.81 108.30 3.51 0.30 N 184 7 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.72 117.00 -3.28 0.50 N 185 7 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.42 117.70 3.72 0.50 N 186 7 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.20 118.60 -5.40 0.60 N 187 7 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.47 108.30 2.17 0.30 N 188 7 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.60 117.00 -3.40 0.50 N 189 7 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.46 117.70 3.76 0.50 N 190 7 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 113.34 118.60 -5.26 0.60 N 191 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.18 122.90 -3.72 0.60 N 192 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.67 108.30 2.37 0.30 N 193 8 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.66 117.00 -3.34 0.50 N 194 8 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.48 117.70 3.78 0.50 N 195 8 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.25 118.60 -5.35 0.60 N 196 8 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.92 108.30 2.62 0.30 N 197 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.64 108.30 2.34 0.30 N 198 8 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.79 108.30 3.49 0.30 N 199 8 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.16 122.90 -3.74 0.60 N 200 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.04 108.30 2.74 0.30 N 201 8 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.48 108.30 2.18 0.30 N 202 8 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.08 122.90 -3.82 0.60 N 203 8 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.95 117.00 -3.05 0.50 N 204 8 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.43 117.70 3.73 0.50 N 205 8 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.10 118.60 -5.50 0.60 N 206 8 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.34 108.30 3.04 0.30 N 207 8 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.31 108.30 3.01 0.30 N 208 8 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 111.05 108.30 2.75 0.30 N 209 8 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.20 122.90 -3.70 0.60 N 210 8 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.75 108.30 2.45 0.30 N 211 8 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.83 108.30 3.53 0.30 N 212 8 "O4'" A DG 23 ? ? "C1'" A DG 23 ? ? N9 A DG 23 ? ? 110.50 108.30 2.20 0.30 N 213 8 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.72 117.00 -3.28 0.50 N 214 8 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.26 117.70 3.56 0.50 N 215 8 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.21 118.60 -5.39 0.60 N 216 8 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.72 117.00 -3.28 0.50 N 217 8 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.41 117.70 3.71 0.50 N 218 8 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 113.13 118.60 -5.47 0.60 N 219 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.79 108.30 2.49 0.30 N 220 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.15 122.90 -3.75 0.60 N 221 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.60 108.30 2.30 0.30 N 222 9 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.63 117.00 -3.37 0.50 N 223 9 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.48 117.70 3.78 0.50 N 224 9 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.38 118.60 -5.22 0.60 N 225 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.40 108.30 2.10 0.30 N 226 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.38 108.30 2.08 0.30 N 227 9 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.20 108.30 1.90 0.30 N 228 9 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.22 122.90 -3.68 0.60 N 229 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.01 108.30 2.71 0.30 N 230 9 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.93 108.30 2.63 0.30 N 231 9 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.09 122.90 -3.81 0.60 N 232 9 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.85 117.00 -3.15 0.50 N 233 9 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.23 117.70 3.53 0.50 N 234 9 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.16 118.60 -5.44 0.60 N 235 9 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.34 108.30 2.04 0.30 N 236 9 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.48 108.30 2.18 0.30 N 237 9 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.21 122.90 -3.69 0.60 N 238 9 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 111.48 108.30 3.18 0.30 N 239 9 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.60 108.30 3.30 0.30 N 240 9 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.68 117.00 -3.32 0.50 N 241 9 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.45 117.70 3.75 0.50 N 242 9 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.01 118.60 -5.59 0.60 N 243 9 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 111.05 108.30 2.75 0.30 N 244 9 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.68 117.00 -3.32 0.50 N 245 9 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.38 117.70 3.68 0.50 N 246 9 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 112.98 118.60 -5.62 0.60 N 247 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.22 108.30 1.92 0.30 N 248 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.15 122.90 -3.75 0.60 N 249 10 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.35 108.30 2.05 0.30 N 250 10 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.70 117.00 -3.30 0.50 N 251 10 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.41 117.70 3.71 0.50 N 252 10 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.18 118.60 -5.42 0.60 N 253 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.23 108.30 1.93 0.30 N 254 10 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.48 108.30 2.18 0.30 N 255 10 C6 A DT 10 ? ? C5 A DT 10 ? ? C7 A DT 10 ? ? 119.06 122.90 -3.84 0.60 N 256 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.29 108.30 1.99 0.30 N 257 10 "C3'" A DG 11 ? ? "O3'" A DG 11 ? ? P A DG 12 ? ? 126.98 119.70 7.28 1.20 Y 258 10 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 111.02 108.30 2.72 0.30 N 259 10 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.02 122.90 -3.88 0.60 N 260 10 C4 A DA 15 ? ? C5 A DA 15 ? ? C6 A DA 15 ? ? 113.93 117.00 -3.07 0.50 N 261 10 C5 A DA 15 ? ? C6 A DA 15 ? ? N1 A DA 15 ? ? 121.40 117.70 3.70 0.50 N 262 10 N1 A DA 15 ? ? C6 A DA 15 ? ? N6 A DA 15 ? ? 113.21 118.60 -5.39 0.60 N 263 10 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.91 108.30 2.61 0.30 N 264 10 "O4'" A DT 19 ? ? "C1'" A DT 19 ? ? N1 A DT 19 ? ? 110.42 108.30 2.12 0.30 N 265 10 C6 A DT 19 ? ? C5 A DT 19 ? ? C7 A DT 19 ? ? 119.26 122.90 -3.64 0.60 N 266 10 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.55 108.30 2.25 0.30 N 267 10 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 110.72 108.30 2.42 0.30 N 268 10 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.72 117.00 -3.28 0.50 N 269 10 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.37 117.70 3.67 0.50 N 270 10 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 112.99 118.60 -5.61 0.60 N 271 10 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.86 108.30 2.56 0.30 N 272 10 C4 A DA 25 ? ? C5 A DA 25 ? ? C6 A DA 25 ? ? 113.67 117.00 -3.33 0.50 N 273 10 C5 A DA 25 ? ? C6 A DA 25 ? ? N1 A DA 25 ? ? 121.40 117.70 3.70 0.50 N 274 10 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 113.02 118.60 -5.58 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 11 ? ? 0.060 'SIDE CHAIN' 2 2 DG A 11 ? ? 0.051 'SIDE CHAIN' 3 3 DG A 11 ? ? 0.069 'SIDE CHAIN' 4 4 DG A 11 ? ? 0.064 'SIDE CHAIN' 5 4 DG A 17 ? ? 0.055 'SIDE CHAIN' 6 5 DG A 17 ? ? 0.059 'SIDE CHAIN' 7 7 DG A 11 ? ? 0.062 'SIDE CHAIN' 8 7 DG A 17 ? ? 0.064 'SIDE CHAIN' 9 7 DG A 23 ? ? 0.067 'SIDE CHAIN' 10 8 DG A 9 ? ? 0.053 'SIDE CHAIN' 11 8 DG A 11 ? ? 0.078 'SIDE CHAIN' 12 8 DG A 21 ? ? 0.065 'SIDE CHAIN' 13 9 DG A 11 ? ? 0.062 'SIDE CHAIN' 14 10 DG A 13 ? ? 0.056 'SIDE CHAIN' 15 10 DG A 17 ? ? 0.058 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7N7D _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7N7D _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7N7D _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2 mM DNA, 3.6 mM Berberine, 10 mM potassium phosphate, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 DNA 1.2 ? mM 'natural abundance' 1 Berberine 3.6 ? mM 'natural abundance' 1 'potassium phosphate' 10 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 7 10 ? ? mM 298K ? pH ? ? K 2 308 atm 1 7 10 ? ? mM 308K ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 2 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 7N7D 'simulated annealing' ? 2 7N7D 'simulated annealing' ? 6 7N7D 'molecular dynamics' ? 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber 16 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' 6 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' 2 'structure calculation' 'X-PLOR NIH' 2.48 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' 'CcpNmr Analysis' 2.4 CCPN 4 'peak picking' 'CcpNmr Analysis' 2.4 CCPN 5 processing TopSpin ? 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BER C1 C Y N 1 BER C2 C Y N 2 BER N1 N Y N 3 BER C3 C Y N 4 BER C4 C Y N 5 BER C5 C Y N 6 BER C6 C Y N 7 BER C7 C N N 8 BER C8 C Y N 9 BER C9 C Y N 10 BER C10 C N N 11 BER C11 C Y N 12 BER C12 C Y N 13 BER C13 C Y N 14 BER C14 C Y N 15 BER O1 O N N 16 BER C15 C Y N 17 BER C16 C Y N 18 BER O2 O N N 19 BER C17 C N N 20 BER C18 C Y N 21 BER O3 O N N 22 BER O4 O N N 23 BER C19 C N N 24 BER C20 C N N 25 BER H31 H N N 26 BER H51 H N N 27 BER H61 H N N 28 BER H71 H N N 29 BER H72 H N N 30 BER H91 H N N 31 BER H101 H N N 32 BER H102 H N N 33 BER H131 H N N 34 BER H161 H N N 35 BER H171 H N N 36 BER H172 H N N 37 BER H191 H N N 38 BER H192 H N N 39 BER H193 H N N 40 BER H201 H N N 41 BER H202 H N N 42 BER H203 H N N 43 DA OP3 O N N 44 DA P P N N 45 DA OP1 O N N 46 DA OP2 O N N 47 DA "O5'" O N N 48 DA "C5'" C N N 49 DA "C4'" C N R 50 DA "O4'" O N N 51 DA "C3'" C N S 52 DA "O3'" O N N 53 DA "C2'" C N N 54 DA "C1'" C N R 55 DA N9 N Y N 56 DA C8 C Y N 57 DA N7 N Y N 58 DA C5 C Y N 59 DA C6 C Y N 60 DA N6 N N N 61 DA N1 N Y N 62 DA C2 C Y N 63 DA N3 N Y N 64 DA C4 C Y N 65 DA HOP3 H N N 66 DA HOP2 H N N 67 DA "H5'" H N N 68 DA "H5''" H N N 69 DA "H4'" H N N 70 DA "H3'" H N N 71 DA "HO3'" H N N 72 DA "H2'" H N N 73 DA "H2''" H N N 74 DA "H1'" H N N 75 DA H8 H N N 76 DA H61 H N N 77 DA H62 H N N 78 DA H2 H N N 79 DG OP3 O N N 80 DG P P N N 81 DG OP1 O N N 82 DG OP2 O N N 83 DG "O5'" O N N 84 DG "C5'" C N N 85 DG "C4'" C N R 86 DG "O4'" O N N 87 DG "C3'" C N S 88 DG "O3'" O N N 89 DG "C2'" C N N 90 DG "C1'" C N R 91 DG N9 N Y N 92 DG C8 C Y N 93 DG N7 N Y N 94 DG C5 C Y N 95 DG C6 C N N 96 DG O6 O N N 97 DG N1 N N N 98 DG C2 C N N 99 DG N2 N N N 100 DG N3 N N N 101 DG C4 C Y N 102 DG HOP3 H N N 103 DG HOP2 H N N 104 DG "H5'" H N N 105 DG "H5''" H N N 106 DG "H4'" H N N 107 DG "H3'" H N N 108 DG "HO3'" H N N 109 DG "H2'" H N N 110 DG "H2''" H N N 111 DG "H1'" H N N 112 DG H8 H N N 113 DG H1 H N N 114 DG H21 H N N 115 DG H22 H N N 116 DT OP3 O N N 117 DT P P N N 118 DT OP1 O N N 119 DT OP2 O N N 120 DT "O5'" O N N 121 DT "C5'" C N N 122 DT "C4'" C N R 123 DT "O4'" O N N 124 DT "C3'" C N S 125 DT "O3'" O N N 126 DT "C2'" C N N 127 DT "C1'" C N R 128 DT N1 N N N 129 DT C2 C N N 130 DT O2 O N N 131 DT N3 N N N 132 DT C4 C N N 133 DT O4 O N N 134 DT C5 C N N 135 DT C7 C N N 136 DT C6 C N N 137 DT HOP3 H N N 138 DT HOP2 H N N 139 DT "H5'" H N N 140 DT "H5''" H N N 141 DT "H4'" H N N 142 DT "H3'" H N N 143 DT "HO3'" H N N 144 DT "H2'" H N N 145 DT "H2''" H N N 146 DT "H1'" H N N 147 DT H3 H N N 148 DT H71 H N N 149 DT H72 H N N 150 DT H73 H N N 151 DT H6 H N N 152 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BER C1 C2 sing Y N 1 BER C1 N1 doub Y N 2 BER C1 C3 sing Y N 3 BER C2 C4 doub Y N 4 BER C2 C5 sing Y N 5 BER N1 C6 sing Y N 6 BER N1 C7 sing N N 7 BER C3 C8 doub Y N 8 BER C3 H31 sing N N 9 BER C4 C9 sing Y N 10 BER C4 C10 sing N N 11 BER C5 C11 doub Y N 12 BER C5 H51 sing N N 13 BER C6 C12 doub Y N 14 BER C6 H61 sing N N 15 BER C7 C10 sing N N 16 BER C7 H71 sing N N 17 BER C7 H72 sing N N 18 BER C8 C12 sing Y N 19 BER C8 C13 sing Y N 20 BER C9 C14 doub Y N 21 BER C9 H91 sing N N 22 BER C10 H101 sing N N 23 BER C10 H102 sing N N 24 BER C11 C14 sing Y N 25 BER C11 O1 sing N N 26 BER C12 C15 sing Y N 27 BER C13 C16 doub Y N 28 BER C13 H131 sing N N 29 BER C14 O2 sing N N 30 BER O1 C17 sing N N 31 BER C15 C18 doub Y N 32 BER C15 O3 sing N N 33 BER C16 C18 sing Y N 34 BER C16 H161 sing N N 35 BER O2 C17 sing N N 36 BER C17 H171 sing N N 37 BER C17 H172 sing N N 38 BER C18 O4 sing N N 39 BER O3 C19 sing N N 40 BER O4 C20 sing N N 41 BER C19 H191 sing N N 42 BER C19 H192 sing N N 43 BER C19 H193 sing N N 44 BER C20 H201 sing N N 45 BER C20 H202 sing N N 46 BER C20 H203 sing N N 47 DA OP3 P sing N N 48 DA OP3 HOP3 sing N N 49 DA P OP1 doub N N 50 DA P OP2 sing N N 51 DA P "O5'" sing N N 52 DA OP2 HOP2 sing N N 53 DA "O5'" "C5'" sing N N 54 DA "C5'" "C4'" sing N N 55 DA "C5'" "H5'" sing N N 56 DA "C5'" "H5''" sing N N 57 DA "C4'" "O4'" sing N N 58 DA "C4'" "C3'" sing N N 59 DA "C4'" "H4'" sing N N 60 DA "O4'" "C1'" sing N N 61 DA "C3'" "O3'" sing N N 62 DA "C3'" "C2'" sing N N 63 DA "C3'" "H3'" sing N N 64 DA "O3'" "HO3'" sing N N 65 DA "C2'" "C1'" sing N N 66 DA "C2'" "H2'" sing N N 67 DA "C2'" "H2''" sing N N 68 DA "C1'" N9 sing N N 69 DA "C1'" "H1'" sing N N 70 DA N9 C8 sing Y N 71 DA N9 C4 sing Y N 72 DA C8 N7 doub Y N 73 DA C8 H8 sing N N 74 DA N7 C5 sing Y N 75 DA C5 C6 sing Y N 76 DA C5 C4 doub Y N 77 DA C6 N6 sing N N 78 DA C6 N1 doub Y N 79 DA N6 H61 sing N N 80 DA N6 H62 sing N N 81 DA N1 C2 sing Y N 82 DA C2 N3 doub Y N 83 DA C2 H2 sing N N 84 DA N3 C4 sing Y N 85 DG OP3 P sing N N 86 DG OP3 HOP3 sing N N 87 DG P OP1 doub N N 88 DG P OP2 sing N N 89 DG P "O5'" sing N N 90 DG OP2 HOP2 sing N N 91 DG "O5'" "C5'" sing N N 92 DG "C5'" "C4'" sing N N 93 DG "C5'" "H5'" sing N N 94 DG "C5'" "H5''" sing N N 95 DG "C4'" "O4'" sing N N 96 DG "C4'" "C3'" sing N N 97 DG "C4'" "H4'" sing N N 98 DG "O4'" "C1'" sing N N 99 DG "C3'" "O3'" sing N N 100 DG "C3'" "C2'" sing N N 101 DG "C3'" "H3'" sing N N 102 DG "O3'" "HO3'" sing N N 103 DG "C2'" "C1'" sing N N 104 DG "C2'" "H2'" sing N N 105 DG "C2'" "H2''" sing N N 106 DG "C1'" N9 sing N N 107 DG "C1'" "H1'" sing N N 108 DG N9 C8 sing Y N 109 DG N9 C4 sing Y N 110 DG C8 N7 doub Y N 111 DG C8 H8 sing N N 112 DG N7 C5 sing Y N 113 DG C5 C6 sing N N 114 DG C5 C4 doub Y N 115 DG C6 O6 doub N N 116 DG C6 N1 sing N N 117 DG N1 C2 sing N N 118 DG N1 H1 sing N N 119 DG C2 N2 sing N N 120 DG C2 N3 doub N N 121 DG N2 H21 sing N N 122 DG N2 H22 sing N N 123 DG N3 C4 sing N N 124 DT OP3 P sing N N 125 DT OP3 HOP3 sing N N 126 DT P OP1 doub N N 127 DT P OP2 sing N N 128 DT P "O5'" sing N N 129 DT OP2 HOP2 sing N N 130 DT "O5'" "C5'" sing N N 131 DT "C5'" "C4'" sing N N 132 DT "C5'" "H5'" sing N N 133 DT "C5'" "H5''" sing N N 134 DT "C4'" "O4'" sing N N 135 DT "C4'" "C3'" sing N N 136 DT "C4'" "H4'" sing N N 137 DT "O4'" "C1'" sing N N 138 DT "C3'" "O3'" sing N N 139 DT "C3'" "C2'" sing N N 140 DT "C3'" "H3'" sing N N 141 DT "O3'" "HO3'" sing N N 142 DT "C2'" "C1'" sing N N 143 DT "C2'" "H2'" sing N N 144 DT "C2'" "H2''" sing N N 145 DT "C1'" N1 sing N N 146 DT "C1'" "H1'" sing N N 147 DT N1 C2 sing N N 148 DT N1 C6 sing N N 149 DT C2 O2 doub N N 150 DT C2 N3 sing N N 151 DT N3 C4 sing N N 152 DT N3 H3 sing N N 153 DT C4 O4 doub N N 154 DT C4 C5 sing N N 155 DT C5 C7 sing N N 156 DT C5 C6 doub N N 157 DT C7 H71 sing N N 158 DT C7 H72 sing N N 159 DT C7 H73 sing N N 160 DT C6 H6 sing N N 161 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7N7D 'double helix' 7N7D 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 6 1_555 A DG 19 1_555 -2.024 -3.180 0.187 -0.281 -3.195 89.501 1 A_DG9:DG22_A A 9 ? A 22 ? 6 3 1 A DG 10 1_555 A DG 15 1_555 1.940 3.166 -0.227 -0.689 1.092 -91.733 2 A_DG13:DG18_A A 13 ? A 18 ? 6 3 1 A DG 18 1_555 A DG 14 1_555 -1.841 -3.300 0.131 2.375 4.399 89.739 3 A_DG21:DG17_A A 21 ? A 17 ? 6 3 1 A DG 17 1_555 A DG 13 1_555 -1.806 -3.260 -0.599 -6.366 -2.606 87.016 4 A_DG20:DG16_A A 20 ? A 16 ? 6 3 1 A DG 8 1_555 A DG 4 1_555 -1.822 -3.255 0.149 2.327 -1.787 91.882 5 A_DG11:DG7_A A 11 ? A 7 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 6 1_555 A DG 19 1_555 A DG 10 1_555 A DG 15 1_555 -1.906 -3.241 -0.280 5.493 3.850 179.805 -1.621 0.953 -0.281 1.925 -2.746 179.806 1 AA_DG9DG13:DG18DG22_AA A 9 ? A 22 ? A 13 ? A 18 ? 1 A DG 10 1_555 A DG 15 1_555 A DG 18 1_555 A DG 14 1_555 -1.204 -1.938 -3.073 -1.953 -1.550 66.266 -1.829 1.174 -3.000 -1.417 1.786 66.308 2 AA_DG13DG21:DG17DG18_AA A 13 ? A 18 ? A 21 ? A 17 ? 1 A DG 18 1_555 A DG 14 1_555 A DG 17 1_555 A DG 13 1_555 0.451 1.090 -3.299 -4.349 7.005 -33.507 -0.714 1.459 -3.368 -11.927 -7.404 -34.478 3 AA_DG21DG20:DG16DG17_AA A 21 ? A 17 ? A 20 ? A 16 ? 1 A DG 17 1_555 A DG 13 1_555 A DG 8 1_555 A DG 4 1_555 1.870 3.252 0.083 -3.926 8.090 -179.412 -1.626 0.935 0.082 -4.045 -1.963 -179.414 4 AA_DG20DG11:DG7DG16_AA A 20 ? A 16 ? A 11 ? A 7 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' R01CA177585 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' U01CA240346 2 'German Research Foundation (DFG)' Germany 427347592 3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id BER _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id BER _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 7N7D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_