HEADER ANTIVIRAL PROTEIN 10-JUN-21 7N7H TITLE X-RAY CRYSTAL STRUCTURE OF VIPERIN-LIKE ENZYME FROM NEMATOSTELLA TITLE 2 VECTENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIPERIN-LIKE ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEMATOSTELLA VECTENSIS; SOURCE 3 ORGANISM_COMMON: STARLET SEA ANEMONE; SOURCE 4 ORGANISM_TAXID: 45351; SOURCE 5 GENE: V1G87644; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RADICAL SAM PROTEIN, METALLOPROTEIN, ANTIVIRAL, DDH-SYNTHASE, KEYWDS 2 ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.L.GROVE,S.C.ALMO,J.B.BONANNO,J.C.LACHOWICZ,A.G.GIZZI REVDAT 3 18-OCT-23 7N7H 1 REMARK REVDAT 2 28-JUL-21 7N7H 1 JRNL REVDAT 1 07-JUL-21 7N7H 0 JRNL AUTH J.C.LACHOWICZ,A.S.GIZZI,S.C.ALMO,T.L.GROVE JRNL TITL STRUCTURAL INSIGHT INTO THE SUBSTRATE SCOPE OF VIPERIN AND JRNL TITL 2 VIPERIN-LIKE ENZYMES FROM THREE DOMAINS OF LIFE. JRNL REF BIOCHEMISTRY V. 60 2116 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 34156827 JRNL DOI 10.1021/ACS.BIOCHEM.0C00958 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3128 41.1669 144.4238 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.2383 REMARK 3 T33: 0.1968 T12: -0.0024 REMARK 3 T13: -0.0448 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.7213 L22: 1.5078 REMARK 3 L33: 1.2085 L12: 0.1778 REMARK 3 L13: -0.2562 L23: -0.7773 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.3429 S13: -0.0617 REMARK 3 S21: -0.4392 S22: -0.0091 S23: 0.2682 REMARK 3 S31: 0.3225 S32: -0.2522 S33: -0.0169 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6897 47.2727 159.1264 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.0998 REMARK 3 T33: 0.0903 T12: -0.0024 REMARK 3 T13: -0.0213 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.3586 L22: 1.4164 REMARK 3 L33: 1.0589 L12: 0.0411 REMARK 3 L13: 0.0453 L23: -0.2356 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0030 S13: -0.0178 REMARK 3 S21: 0.1027 S22: -0.0059 S23: -0.1016 REMARK 3 S31: -0.0193 S32: 0.0698 S33: 0.0167 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2879 58.8896 148.7912 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1270 REMARK 3 T33: 0.1109 T12: 0.0019 REMARK 3 T13: -0.0178 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.6971 L22: 1.0669 REMARK 3 L33: 0.8243 L12: 0.0393 REMARK 3 L13: -0.0179 L23: -0.2352 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0962 S13: 0.0495 REMARK 3 S21: -0.0588 S22: -0.0077 S23: -0.0061 REMARK 3 S31: -0.1628 S32: -0.0062 S33: 0.0285 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9893 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49635 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 29.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 7, 20% (W/V) PEG REMARK 280 2000-MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.43750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.87300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.26650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.87300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.43750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.26650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 289 REMARK 465 LEU A 290 REMARK 465 ASP A 291 REMARK 465 TRP A 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 127 O HOH A 401 1.63 REMARK 500 O HOH A 677 O HOH A 721 1.91 REMARK 500 OE1 GLU A 35 O HOH A 402 2.08 REMARK 500 O HOH A 605 O HOH A 656 2.13 REMARK 500 O HOH A 715 O HOH A 721 2.14 REMARK 500 OD1 ASP A 287 O HOH A 403 2.17 REMARK 500 OG1 THR A 1 O HOH A 404 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 172 CB CYS A 172 SG -0.097 REMARK 500 GLU A 226 CG GLU A 226 CD 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 172 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 17 34.19 -141.06 REMARK 500 VAL A 132 -66.13 -107.37 REMARK 500 SER A 248 -163.66 -117.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 739 DISTANCE = 6.67 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 SF4 A 301 S2 114.6 REMARK 620 3 SF4 A 301 S3 100.4 109.9 REMARK 620 4 SF4 A 301 S4 124.3 103.2 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 SF4 A 301 S1 115.3 REMARK 620 3 SF4 A 301 S3 117.8 104.6 REMARK 620 4 SF4 A 301 S4 109.6 105.4 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 SF4 A 301 S1 120.2 REMARK 620 3 SF4 A 301 S2 115.1 103.5 REMARK 620 4 SF4 A 301 S4 107.5 105.5 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 OG1 REMARK 620 2 GLY A 186 O 108.2 REMARK 620 3 HOH A 526 O 131.2 85.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 302 N REMARK 620 2 SF4 A 301 S1 163.5 REMARK 620 3 SF4 A 301 S2 85.5 97.0 REMARK 620 4 SF4 A 301 S3 93.9 101.1 105.1 REMARK 620 5 SAM A 302 O 74.2 97.3 151.8 95.8 REMARK 620 N 1 2 3 4 DBREF 7N7H A 1 292 UNP A7RNF3 A7RNF3_NEMVE 1 292 SEQADV 7N7H MET A 0 UNP A7RNF3 INITIATING METHIONINE SEQRES 1 A 293 MET THR VAL PRO VAL SER VAL ASN TYR HIS PHE THR ARG SEQRES 2 A 293 GLN CYS ASN TYR GLN CYS GLY PHE CYS PHE HIS THR ALA SEQRES 3 A 293 LYS THR SER PHE VAL LEU PRO ILE GLU GLU ALA LYS LYS SEQRES 4 A 293 GLY LEU LEU MET LEU MET LYS ALA GLY MET GLU LYS VAL SEQRES 5 A 293 ASN PHE SER GLY GLY GLU PRO PHE LEU HIS ASP ARG GLY SEQRES 6 A 293 LYS PHE VAL GLY GLU LEU VAL ARG TYR CYS LYS GLN GLU SEQRES 7 A 293 LEU GLU LEU PRO SER VAL SER ILE VAL SER ASN GLY SER SEQRES 8 A 293 LEU ILE ARG ASP ASN TRP PHE ASN LYS TYR GLY GLU CYS SEQRES 9 A 293 LEU ASP ILE LEU ALA ILE SER CYS ASP SER PHE ASP GLU SEQRES 10 A 293 GLU THR ASN VAL LEU ILE GLY ARG ARG GLN LYS GLY LYS SEQRES 11 A 293 ASN HIS VAL GLU ALA LEU ARG ARG VAL ARG ASP MET CYS SEQRES 12 A 293 GLN GLN TYR LYS VAL ALA PHE LYS LEU ASN THR VAL VAL SEQRES 13 A 293 ASN THR TYR ASN LYS GLN GLU ASP MET THR SER HIS ILE SEQRES 14 A 293 GLN GLU LEU CYS PRO VAL ARG TRP LYS VAL PHE GLN CYS SEQRES 15 A 293 LEU VAL ILE ALA GLY GLU ASN SER GLY GLU ASP ALA LEU SEQRES 16 A 293 ARG ASP ALA GLU GLN PHE LEU VAL SER ASN HIS GLU PHE SEQRES 17 A 293 ASP GLN PHE ILE SER ARG HIS ALA SER LEU GLU CYS LEU SEQRES 18 A 293 VAL PRO GLU SER ASN GLU LYS MET GLN ASN SER TYR LEU SEQRES 19 A 293 ILE LEU ASP GLU TYR MET ARG PHE LEU ASP CYS THR GLY SEQRES 20 A 293 GLY SER LYS SER PRO SER LYS SER ILE LEU ASP VAL GLY SEQRES 21 A 293 VAL ASP GLN ALA MET LYS PHE SER GLY PHE ASP GLU LYS SEQRES 22 A 293 MET PHE LEU LYS ARG GLY GLY LYS TYR VAL TRP SER LYS SEQRES 23 A 293 ALA ASP MET LYS LEU ASP TRP HET SF4 A 301 8 HET SAM A 302 27 HET CTP A 303 29 HET NA A 304 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SAM S-ADENOSYLMETHIONINE HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE HETNAM NA SODIUM ION FORMUL 2 SF4 FE4 S4 FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 CTP C9 H16 N3 O14 P3 FORMUL 5 NA NA 1+ FORMUL 6 HOH *339(H2 O) HELIX 1 AA1 PRO A 32 ALA A 46 1 15 HELIX 2 AA2 GLU A 57 ARG A 63 5 7 HELIX 3 AA3 GLY A 64 GLU A 77 1 14 HELIX 4 AA4 ARG A 93 GLY A 101 1 9 HELIX 5 AA5 GLU A 102 LEU A 104 5 3 HELIX 6 AA6 ASP A 115 GLY A 123 1 9 HELIX 7 AA7 GLU A 133 LYS A 146 1 14 HELIX 8 AA8 MET A 164 CYS A 172 1 9 HELIX 9 AA9 ALA A 197 LEU A 201 5 5 HELIX 10 AB1 SER A 203 HIS A 214 1 12 HELIX 11 AB2 SER A 224 GLN A 229 1 6 HELIX 12 AB3 ILE A 255 GLY A 259 1 5 HELIX 13 AB4 GLY A 259 LYS A 265 1 7 HELIX 14 AB5 ASP A 270 ARG A 277 1 8 HELIX 15 AB6 SER A 284 MET A 288 5 5 SHEET 1 AA1 8 LEU A 220 GLU A 223 0 SHEET 2 AA1 8 ARG A 175 GLN A 180 1 N TRP A 176 O VAL A 221 SHEET 3 AA1 8 ALA A 148 VAL A 155 1 N VAL A 155 O PHE A 179 SHEET 4 AA1 8 ILE A 106 SER A 110 1 N LEU A 107 O LYS A 150 SHEET 5 AA1 8 SER A 82 SER A 87 1 N ILE A 85 O ALA A 108 SHEET 6 AA1 8 LYS A 50 SER A 54 1 N VAL A 51 O SER A 84 SHEET 7 AA1 8 SER A 5 HIS A 9 1 N TYR A 8 O ASN A 52 SHEET 8 AA1 8 LEU A 233 LEU A 235 1 O LEU A 235 N ASN A 7 SHEET 1 AA2 2 ARG A 240 ASP A 243 0 SHEET 2 AA2 2 SER A 250 SER A 254 -1 O SER A 250 N ASP A 243 LINK SG CYS A 14 FE1 SF4 A 301 1555 1555 2.24 LINK SG CYS A 18 FE2 SF4 A 301 1555 1555 2.30 LINK SG CYS A 21 FE3 SF4 A 301 1555 1555 2.28 LINK OG1 THR A 24 NA NA A 304 1555 1555 2.71 LINK O GLY A 186 NA NA A 304 1555 1555 2.93 LINK FE4 SF4 A 301 N SAM A 302 1555 1555 2.21 LINK FE4 SF4 A 301 O SAM A 302 1555 1555 2.14 LINK NA NA A 304 O HOH A 526 1555 1555 2.63 CISPEP 1 GLY A 55 GLY A 56 0 13.07 CRYST1 36.875 50.533 137.746 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007260 0.00000