HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-JUN-21 7N7N TITLE CRYSTAL STRUCTURE OF PI5P4KIIALPHA COMPLEX WITH VOLASERTIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE TYPE-2 ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1-PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE 2-ALPHA, COMPND 5 DIPHOSPHOINOSITIDE KINASE 2-ALPHA,PIP5KIII,PHOSPHATIDYLINOSITOL 5- COMPND 6 PHOSPHATE 4-KINASE,PI5P4KALPHA,PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4- COMPND 7 KINASE TYPE II ALPHA,PI(5)P 4-KINASE TYPE II ALPHA,PIP4KII-ALPHA, COMPND 8 PTDINS(4)P-5-KINASE B ISOFORM,PTDINS(4)P-5-KINASE C ISOFORM, COMPND 9 PTDINS(5)P-4-KINASE ISOFORM 2-ALPHA; COMPND 10 EC: 2.7.1.149; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIP4K2A, PI5P4KA, PIP5K2, PIP5K2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.CHEN,Y.HA REVDAT 4 18-OCT-23 7N7N 1 REMARK REVDAT 3 04-OCT-23 7N7N 1 REMARK REVDAT 2 28-JUL-21 7N7N 1 JRNL REVDAT 1 30-JUN-21 7N7N 0 JRNL AUTH S.CHEN,C.CHANDRA TJIN,X.GAO,Y.XUE,H.JIAO,R.ZHANG,M.WU,Z.HE, JRNL AUTH 2 J.ELLMAN,Y.HA JRNL TITL PHARMACOLOGICAL INHIBITION OF PI5P4K ALPHA / BETA DISRUPTS JRNL TITL 2 CELL ENERGY METABOLISM AND SELECTIVELY KILLS P53-NULL TUMOR JRNL TITL 3 CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34001596 JRNL DOI 10.1073/PNAS.2002486118 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0218 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1174 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -2.49000 REMARK 3 B12 (A**2) : 0.38000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.984 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2495 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3388 ; 1.088 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 5.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;35.891 ;24.018 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 396 ;16.047 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1877 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7N7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0218 REMARK 200 STARTING MODEL: 2YBX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M HEPES PH 7.5, 25% (W/V) POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.72833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.45667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.59250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.32083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.86417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.72833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 63.45667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.32083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.59250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.86417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 204.10500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -353.52023 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 206.23417 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 SER A 30 REMARK 465 HIS A 31 REMARK 465 MET A 32 REMARK 465 ALA A 33 REMARK 465 SER A 126 REMARK 465 GLN A 127 REMARK 465 ALA A 128 REMARK 465 ARG A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 GLU A 287 REMARK 465 GLN A 288 REMARK 465 GLU A 289 REMARK 465 GLU A 290 REMARK 465 VAL A 291 REMARK 465 GLU A 292 REMARK 465 CYS A 293 REMARK 465 GLU A 294 REMARK 465 GLU A 295 REMARK 465 ASN A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 GLU A 301 REMARK 465 GLY A 302 REMARK 465 GLU A 303 REMARK 465 SER A 304 REMARK 465 ASP A 305 REMARK 465 GLY A 306 REMARK 465 THR A 307 REMARK 465 HIS A 308 REMARK 465 PRO A 309 REMARK 465 VAL A 310 REMARK 465 GLY A 311 REMARK 465 THR A 312 REMARK 465 PRO A 313 REMARK 465 PRO A 314 REMARK 465 ASP A 315 REMARK 465 SER A 316 REMARK 465 PRO A 317 REMARK 465 GLY A 318 REMARK 465 ASN A 319 REMARK 465 THR A 320 REMARK 465 LEU A 321 REMARK 465 ASN A 322 REMARK 465 SER A 323 REMARK 465 SER A 324 REMARK 465 PRO A 325 REMARK 465 PRO A 326 REMARK 465 LEU A 327 REMARK 465 ALA A 328 REMARK 465 PRO A 329 REMARK 465 LYS A 368 REMARK 465 LYS A 369 REMARK 465 ALA A 370 REMARK 465 ALA A 371 REMARK 465 HIS A 372 REMARK 465 ALA A 373 REMARK 465 ALA A 374 REMARK 465 LYS A 375 REMARK 465 THR A 376 REMARK 465 VAL A 377 REMARK 465 LYS A 378 REMARK 465 HIS A 379 REMARK 465 GLY A 380 REMARK 465 ALA A 381 REMARK 465 GLY A 382 REMARK 465 ALA A 383 REMARK 465 GLU A 384 REMARK 465 ILE A 385 REMARK 465 SER A 386 REMARK 465 THR A 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 72 CD1 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 GLN A 110 OE1 NE2 REMARK 470 ARG A 118 CD NE CZ NH1 NH2 REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 140 CE NZ REMARK 470 LYS A 145 CE NZ REMARK 470 LYS A 160 CE NZ REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 ARG A 203 CZ NH1 NH2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 VAL A 217 CG1 CG2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 LEU A 230 CG CD1 CD2 REMARK 470 LYS A 234 CD CE NZ REMARK 470 ILE A 239 CG1 CG2 CD1 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LYS A 244 CE NZ REMARK 470 LYS A 252 CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 257 CD OE1 OE2 REMARK 470 LYS A 261 CE NZ REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 ASN A 335 CG OD1 ND2 REMARK 470 LYS A 342 CD CE NZ REMARK 470 LYS A 350 CE NZ REMARK 470 TYR A 364 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 365 CG OD1 OD2 REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 GLN A 392 CG CD OE1 NE2 REMARK 470 LYS A 395 CG CD CE NZ REMARK 470 HIS A 403 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 615 O HOH A 712 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 643 O HOH A 643 12527 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 102 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 187 78.29 19.41 REMARK 500 ASN A 240 -43.59 -135.62 REMARK 500 HIS A 363 95.99 61.07 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N7N A 33 405 UNP P48426 PI42A_HUMAN 33 405 SEQADV 7N7N GLY A 29 UNP P48426 EXPRESSION TAG SEQADV 7N7N SER A 30 UNP P48426 EXPRESSION TAG SEQADV 7N7N HIS A 31 UNP P48426 EXPRESSION TAG SEQADV 7N7N MET A 32 UNP P48426 EXPRESSION TAG SEQRES 1 A 377 GLY SER HIS MET ALA SER ASP PRO LEU LEU SER VAL LEU SEQRES 2 A 377 MET TRP GLY VAL ASN HIS SER ILE ASN GLU LEU SER HIS SEQRES 3 A 377 VAL GLN ILE PRO VAL MET LEU MET PRO ASP ASP PHE LYS SEQRES 4 A 377 ALA TYR SER LYS ILE LYS VAL ASP ASN HIS LEU PHE ASN SEQRES 5 A 377 LYS GLU ASN MET PRO SER HIS PHE LYS PHE LYS GLU TYR SEQRES 6 A 377 CYS PRO MET VAL PHE ARG ASN LEU ARG GLU ARG PHE GLY SEQRES 7 A 377 ILE ASP ASP GLN ASP PHE GLN ASN SER LEU THR ARG SER SEQRES 8 A 377 ALA PRO LEU PRO ASN ASP SER GLN ALA ARG SER GLY ALA SEQRES 9 A 377 ARG PHE HIS THR SER TYR ASP LYS ARG TYR ILE ILE LYS SEQRES 10 A 377 THR ILE THR SER GLU ASP VAL ALA GLU MET HIS ASN ILE SEQRES 11 A 377 LEU LYS LYS TYR HIS GLN TYR ILE VAL GLU CYS HIS GLY SEQRES 12 A 377 ILE THR LEU LEU PRO GLN PHE LEU GLY MET TYR ARG LEU SEQRES 13 A 377 ASN VAL ASP GLY VAL GLU ILE TYR VAL ILE VAL THR ARG SEQRES 14 A 377 ASN VAL PHE SER HIS ARG LEU SER VAL TYR ARG LYS TYR SEQRES 15 A 377 ASP LEU LYS GLY SER THR VAL ALA ARG GLU ALA SER ASP SEQRES 16 A 377 LYS GLU LYS ALA LYS GLU LEU PRO THR LEU LYS ASP ASN SEQRES 17 A 377 ASP PHE ILE ASN GLU GLY GLN LYS ILE TYR ILE ASP ASP SEQRES 18 A 377 ASN ASN LYS LYS VAL PHE LEU GLU LYS LEU LYS LYS ASP SEQRES 19 A 377 VAL GLU PHE LEU ALA GLN LEU LYS LEU MET ASP TYR SER SEQRES 20 A 377 LEU LEU VAL GLY ILE HIS ASP VAL GLU ARG ALA GLU GLN SEQRES 21 A 377 GLU GLU VAL GLU CYS GLU GLU ASN ASP GLY GLU GLU GLU SEQRES 22 A 377 GLY GLU SER ASP GLY THR HIS PRO VAL GLY THR PRO PRO SEQRES 23 A 377 ASP SER PRO GLY ASN THR LEU ASN SER SER PRO PRO LEU SEQRES 24 A 377 ALA PRO GLY GLU PHE ASP PRO ASN ILE ASP VAL TYR GLY SEQRES 25 A 377 ILE LYS CYS HIS GLU ASN SER PRO ARG LYS GLU VAL TYR SEQRES 26 A 377 PHE MET ALA ILE ILE ASP ILE LEU THR HIS TYR ASP ALA SEQRES 27 A 377 LYS LYS LYS ALA ALA HIS ALA ALA LYS THR VAL LYS HIS SEQRES 28 A 377 GLY ALA GLY ALA GLU ILE SER THR VAL ASN PRO GLU GLN SEQRES 29 A 377 TYR SER LYS ARG PHE LEU ASP PHE ILE GLY HIS ILE LEU HET IBI A 501 45 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM IBI N-{TRANS-4-[4-(CYCLOPROPYLMETHYL)PIPERAZIN-1- HETNAM 2 IBI YL]CYCLOHEXYL}-4-{[(7R)-7-ETHYL-5-METHYL-8-(1- HETNAM 3 IBI METHYLETHYL)-6-OXO-5,6,7,8-TETRAHYDROPTERIDIN-2- HETNAM 4 IBI YL]AMINO}-3-METHOXYBENZAMIDE HETNAM SO4 SULFATE ION HETSYN IBI VOLASERTIB FORMUL 2 IBI C34 H50 N8 O3 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *120(H2 O) HELIX 1 AA1 ASP A 35 HIS A 54 1 20 HELIX 2 AA2 MET A 62 LYS A 67 5 6 HELIX 3 AA3 CYS A 94 PHE A 105 1 12 HELIX 4 AA4 ASP A 108 ARG A 118 1 11 HELIX 5 AA5 THR A 148 CYS A 169 1 22 HELIX 6 AA6 SER A 222 ALA A 227 1 6 HELIX 7 AA7 LYS A 234 ILE A 239 1 6 HELIX 8 AA8 ASP A 248 LEU A 269 1 22 HELIX 9 AA9 ASN A 389 LEU A 405 1 17 SHEET 1 AA1 6 TYR A 69 ASP A 75 0 SHEET 2 AA1 6 HIS A 87 TYR A 93 -1 O PHE A 88 N VAL A 74 SHEET 3 AA1 6 PHE A 178 VAL A 186 -1 O ARG A 183 N LYS A 91 SHEET 4 AA1 6 VAL A 189 ARG A 197 -1 O VAL A 195 N LEU A 179 SHEET 5 AA1 6 TYR A 142 ILE A 147 -1 N ILE A 143 O THR A 196 SHEET 6 AA1 6 PHE A 134 THR A 136 -1 N HIS A 135 O ILE A 144 SHEET 1 AA2 4 ARG A 208 LEU A 212 0 SHEET 2 AA2 4 SER A 275 ASP A 282 -1 O VAL A 278 N TYR A 210 SHEET 3 AA2 4 GLU A 351 ILE A 358 -1 O ALA A 356 N LEU A 277 SHEET 4 AA2 4 GLY A 340 LYS A 342 -1 N ILE A 341 O TYR A 353 CRYST1 136.070 136.070 95.185 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007349 0.004243 0.000000 0.00000 SCALE2 0.000000 0.008486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010506 0.00000