HEADER PEPTIDE BINDING PROTEIN 13-JUN-21 7N87 TITLE SOLUTION NMR STRUCTURE OF PEPTIDASE DOMAIN FROM CLOSTRIDIUM TITLE 2 THERMOCELLUM PCAT1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC-TYPE BACTERIOCIN TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUNGATEICLOSTRIDIUM THERMOCELLUM (STRAIN ATCC SOURCE 3 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B- SOURCE 4 4536 / VPI 7372); SOURCE 5 ORGANISM_COMMON: CLOSTRIDIUM THERMOCELLUM; SOURCE 6 ORGANISM_TAXID: 203119; SOURCE 7 STRAIN: ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 SOURCE 8 / NRRL B-4536 / VPI 7372; SOURCE 9 GENE: CTHE_0534; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3) RIL; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PMSCG20 KEYWDS C39 PEPTIDASE DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.BHATTACHARYA,A.PALILLO REVDAT 3 15-MAY-24 7N87 1 REMARK REVDAT 2 23-FEB-22 7N87 1 JRNL REVDAT 1 29-DEC-21 7N87 0 JRNL AUTH S.BHATTACHARYA,A.PALILLO JRNL TITL STRUCTURAL AND DYNAMIC STUDIES OF THE PEPTIDASE DOMAIN FROM JRNL TITL 2 CLOSTRIDIUM THERMOCELLUM PCAT1. JRNL REF PROTEIN SCI. V. 31 498 2022 JRNL REFN ESSN 1469-896X JRNL PMID 34865273 JRNL DOI 10.1002/PRO.4248 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257331. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 675 UM [U-100% 13C; U-100% 15N] REMARK 210 C39 PEPTIDASE DOMAIN, 50 UM REMARK 210 SODIUM PHOSPHATE, 150 UM SODIUM REMARK 210 CHLORIDE, 5 MM DTT, 50 MM PBS REMARK 210 BUFFER, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HN(CO) REMARK 210 CA; 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900.03 MHZ; 800.23 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, 3.5, TOPSPIN 2.1, REMARK 210 3.6, CARA 1.5, CYANA 2.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 20 HE2 HIS A 102 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 37.06 -96.03 REMARK 500 1 LYS A 11 73.80 62.14 REMARK 500 1 LEU A 21 -90.33 -166.71 REMARK 500 1 LYS A 39 96.31 59.73 REMARK 500 1 THR A 56 157.30 -49.08 REMARK 500 1 ASP A 85 -72.43 -72.17 REMARK 500 1 ASP A 97 17.72 59.10 REMARK 500 1 ARG A 99 -53.00 -152.61 REMARK 500 2 TYR A 13 42.80 -84.76 REMARK 500 2 THR A 22 -42.58 75.78 REMARK 500 2 LYS A 39 80.54 60.32 REMARK 500 2 ASP A 85 -80.28 -88.74 REMARK 500 2 ARG A 87 -42.69 -150.13 REMARK 500 2 ARG A 99 -67.04 -127.77 REMARK 500 3 ASN A 2 -166.60 -113.91 REMARK 500 3 ALA A 3 -72.69 -102.61 REMARK 500 3 LYS A 10 -142.80 -79.04 REMARK 500 3 LEU A 21 -82.94 -155.30 REMARK 500 3 ASP A 23 39.04 -94.37 REMARK 500 3 LYS A 39 72.31 54.65 REMARK 500 3 LYS A 84 -36.25 -141.36 REMARK 500 3 ARG A 87 -79.50 -74.91 REMARK 500 3 LEU A 88 -59.11 -135.24 REMARK 500 3 ARG A 99 -46.63 -158.54 REMARK 500 3 PRO A 119 82.67 -63.72 REMARK 500 3 PRO A 144 89.85 -66.03 REMARK 500 4 ALA A 3 150.49 69.42 REMARK 500 4 TYR A 13 -87.33 -90.04 REMARK 500 4 CYS A 15 69.08 61.90 REMARK 500 4 THR A 22 -18.78 179.49 REMARK 500 4 ASP A 23 33.59 -98.58 REMARK 500 4 LYS A 39 86.25 55.86 REMARK 500 4 ARG A 99 -33.57 -151.69 REMARK 500 4 ARG A 112 -0.93 71.27 REMARK 500 4 THR A 136 30.95 -94.06 REMARK 500 4 PRO A 144 93.82 -64.31 REMARK 500 4 LYS A 150 -155.89 58.77 REMARK 500 5 ARG A 6 42.78 -90.33 REMARK 500 5 TYR A 13 -90.76 61.86 REMARK 500 5 ARG A 99 -52.59 -139.95 REMARK 500 5 PRO A 144 84.92 -69.30 REMARK 500 5 PHE A 148 55.40 -118.50 REMARK 500 6 LYS A 11 36.10 -94.36 REMARK 500 6 ARG A 17 68.04 -109.78 REMARK 500 6 ASP A 20 86.51 62.91 REMARK 500 6 ASP A 23 53.70 -114.34 REMARK 500 6 LYS A 84 -40.73 -144.07 REMARK 500 6 ARG A 99 -63.40 -147.30 REMARK 500 6 PRO A 144 82.33 -69.29 REMARK 500 7 ASN A 2 33.83 -155.49 REMARK 500 REMARK 500 THIS ENTRY HAS 189 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RY2 RELATED DB: PDB REMARK 900 INTACT PCAT1 STRUCTURE CONTAINING THE PEPTIDASE DOMAIN REMARK 900 RELATED ID: 30926 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF PEPTIDASE DOMAIN FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM PCAT1 DBREF 7N87 A 4 151 UNP A3DCU1 A3DCU1_HUNT2 1 148 SEQADV 7N87 SER A 1 UNP A3DCU1 EXPRESSION TAG SEQADV 7N87 ASN A 2 UNP A3DCU1 EXPRESSION TAG SEQADV 7N87 ALA A 3 UNP A3DCU1 EXPRESSION TAG SEQADV 7N87 ALA A 24 UNP A3DCU1 CYS 21 ENGINEERED MUTATION SEQRES 1 A 151 SER ASN ALA MET LEU ARG ARG LEU PHE LYS LYS LYS TYR SEQRES 2 A 151 VAL CYS VAL ARG GLN TYR ASP LEU THR ASP ALA GLY ALA SEQRES 3 A 151 ALA CYS LEU SER SER ILE ALA GLN TYR TYR GLY LEU LYS SEQRES 4 A 151 MET SER LEU ALA LYS ILE ARG GLU MET THR GLY THR ASP SEQRES 5 A 151 THR GLN GLY THR ASN ALA TYR GLY LEU ILE HIS ALA ALA SEQRES 6 A 151 LYS GLN LEU GLY PHE SER ALA LYS GLY VAL LYS ALA SER SEQRES 7 A 151 LYS GLU ASP LEU LEU LYS ASP PHE ARG LEU PRO ALA ILE SEQRES 8 A 151 ALA ASN VAL ILE VAL ASP ASN ARG LEU ALA HIS PHE VAL SEQRES 9 A 151 VAL ILE TYR SER ILE LYS ASN ARG ILE ILE THR VAL ALA SEQRES 10 A 151 ASP PRO GLY LYS GLY ILE VAL ARG TYR SER MET ASP ASP SEQRES 11 A 151 PHE CYS SER ILE TRP THR GLY GLY LEU VAL LEU LEU GLU SEQRES 12 A 151 PRO GLY GLU ALA PHE GLN LYS GLY HELIX 1 AA1 ASP A 23 TYR A 36 1 14 HELIX 2 AA2 SER A 41 GLY A 50 1 10 HELIX 3 AA3 ASN A 57 LYS A 66 1 10 HELIX 4 AA4 SER A 78 LYS A 84 5 7 HELIX 5 AA5 MET A 128 ILE A 134 1 7 SHEET 1 AA1 6 SER A 71 VAL A 75 0 SHEET 2 AA1 6 TRP A 135 GLU A 143 -1 O LEU A 139 N VAL A 75 SHEET 3 AA1 6 ALA A 90 VAL A 96 -1 N ASN A 93 O GLY A 138 SHEET 4 AA1 6 LEU A 100 LYS A 110 -1 O HIS A 102 N VAL A 94 SHEET 5 AA1 6 ILE A 113 ASP A 118 -1 O THR A 115 N SER A 108 SHEET 6 AA1 6 GLY A 122 SER A 127 -1 O TYR A 126 N ILE A 114 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1