HEADER HYDROLASE/DNA 16-JUN-21 7N94 TITLE LINE-1 ENDONUCLEASE DOMAIN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINE-1 RETROTRANSPOSABLE ELEMENT ORF2 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ORF2P; COMPND 5 EC: 2.7.7.49,3.1.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*GP*CP*TP*CP*CP*TP*TP*TP*TP*TP*AP*AP*GP*GP*GP*CP*TP*A)-3'); COMPND 11 CHAIN: D, F; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*AP*GP*CP*CP*CP*TP*TP*AP*AP*AP*AP*AP*GP*GP*AP*GP*CP*T)-3'); COMPND 16 CHAIN: E, G; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS ENDONUCLEASE, NON-LTR RETROTRANSPOSON, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.KOROLEV,I.MILLER REVDAT 3 18-OCT-23 7N94 1 REMARK REVDAT 2 17-NOV-21 7N94 1 JRNL REVDAT 1 13-OCT-21 7N94 0 JRNL AUTH I.MILLER,M.TOTROV,L.KOROTCHKINA,D.N.KAZYULKIN,A.V.GUDKOV, JRNL AUTH 2 S.KOROLEV JRNL TITL STRUCTURAL DISSECTION OF SEQUENCE RECOGNITION AND CATALYTIC JRNL TITL 2 MECHANISM OF HUMAN LINE-1 ENDONUCLEASE. JRNL REF NUCLEIC ACIDS RES. V. 49 11350 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34554261 JRNL DOI 10.1093/NAR/GKAB826 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9200 - 6.5200 1.00 1443 161 0.1866 0.2240 REMARK 3 2 6.5200 - 5.1800 1.00 1355 150 0.1937 0.2448 REMARK 3 3 5.1800 - 4.5200 1.00 1324 148 0.1736 0.2215 REMARK 3 4 4.5200 - 4.1100 1.00 1322 146 0.1765 0.2483 REMARK 3 5 4.1100 - 3.8200 1.00 1310 146 0.2103 0.2733 REMARK 3 6 3.8200 - 3.5900 1.00 1290 143 0.2216 0.3125 REMARK 3 7 3.5900 - 3.4100 1.00 1301 144 0.2257 0.2963 REMARK 3 8 3.4100 - 3.2600 1.00 1301 144 0.2261 0.3256 REMARK 3 9 3.2600 - 3.1400 1.00 1288 143 0.2663 0.3303 REMARK 3 10 3.1400 - 3.0300 1.00 1287 144 0.2801 0.3639 REMARK 3 11 3.0300 - 2.9300 1.00 1283 143 0.2902 0.3832 REMARK 3 12 2.9300 - 2.8500 0.93 1191 132 0.3325 0.4148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.393 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.026 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5386 REMARK 3 ANGLE : 1.263 7565 REMARK 3 CHIRALITY : 0.061 872 REMARK 3 PLANARITY : 0.007 708 REMARK 3 DIHEDRAL : 17.784 3024 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 17) REMARK 3 SELECTION : CHAIN 'F' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'E' REMARK 3 SELECTION : (CHAIN 'G' AND RESID 1 THROUGH 17) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 1.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1VYB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 0.2M NACL, 30% REMARK 280 JEFFAMINE ED-2003, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.38500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.38700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.38700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.57750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.38700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.38700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.19250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.38700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.38700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.57750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.38700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.38700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.19250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 DT E 18 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 SER B 6 REMARK 465 DA F 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 92 N GLU B 94 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 123 OE2 GLU A 167 8554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 83 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 GLU A 167 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 GLN A 174 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 DA E 9 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 ARG B 60 CG - CD - NE ANGL. DEV. = -21.5 DEGREES REMARK 500 LYS B 81 CD - CE - NZ ANGL. DEV. = -20.3 DEGREES REMARK 500 LYS B 187 CD - CE - NZ ANGL. DEV. = 14.9 DEGREES REMARK 500 DG F 15 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG G 2 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG G 16 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 70 48.92 -74.53 REMARK 500 ALA A 72 -145.45 56.52 REMARK 500 GLN A 106 65.44 33.65 REMARK 500 ASP A 137 -150.77 -122.24 REMARK 500 LEU A 237 -169.42 -102.45 REMARK 500 ALA B 72 -145.79 54.22 REMARK 500 ASP B 137 -147.55 -121.86 REMARK 500 ARG B 158 19.61 57.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N94 A 1 238 UNP O00370 LORF2_HUMAN 1 238 DBREF 7N94 D 1 18 PDB 7N94 7N94 1 18 DBREF 7N94 E 1 18 PDB 7N94 7N94 1 18 DBREF 7N94 B 1 238 UNP O00370 LORF2_HUMAN 1 238 DBREF 7N94 F 1 18 PDB 7N94 7N94 1 18 DBREF 7N94 G 1 18 PDB 7N94 7N94 1 18 SEQADV 7N94 ILE A 15 UNP O00370 VAL 15 CONFLICT SEQADV 7N94 ALA A 21 UNP O00370 PRO 21 CONFLICT SEQADV 7N94 ALA A 145 UNP O00370 ASP 145 ENGINEERED MUTATION SEQADV 7N94 THR A 152 UNP O00370 ILE 152 CONFLICT SEQADV 7N94 ALA A 175 UNP O00370 THR 175 CONFLICT SEQADV 7N94 LYS A 226 UNP O00370 TYR 226 ENGINEERED MUTATION SEQADV 7N94 ILE B 15 UNP O00370 VAL 15 CONFLICT SEQADV 7N94 ALA B 21 UNP O00370 PRO 21 CONFLICT SEQADV 7N94 ALA B 145 UNP O00370 ASP 145 ENGINEERED MUTATION SEQADV 7N94 THR B 152 UNP O00370 ILE 152 CONFLICT SEQADV 7N94 ALA B 175 UNP O00370 THR 175 CONFLICT SEQADV 7N94 LYS B 226 UNP O00370 TYR 226 ENGINEERED MUTATION SEQRES 1 A 238 MET THR GLY SER ASN SER HIS ILE THR ILE LEU THR LEU SEQRES 2 A 238 ASN ILE ASN GLY LEU ASN SER ALA ILE LYS ARG HIS ARG SEQRES 3 A 238 LEU ALA SER TRP ILE LYS SER GLN ASP PRO SER VAL CYS SEQRES 4 A 238 CYS ILE GLN GLU THR HIS LEU THR CYS ARG ASP THR HIS SEQRES 5 A 238 ARG LEU LYS ILE LYS GLY TRP ARG LYS ILE TYR GLN ALA SEQRES 6 A 238 ASN GLY LYS GLN LYS LYS ALA GLY VAL ALA ILE LEU VAL SEQRES 7 A 238 SER ASP LYS THR ASP PHE LYS PRO THR LYS ILE LYS ARG SEQRES 8 A 238 ASP LYS GLU GLY HIS TYR ILE MET VAL LYS GLY SER ILE SEQRES 9 A 238 GLN GLN GLU GLU LEU THR ILE LEU ASN ILE TYR ALA PRO SEQRES 10 A 238 ASN THR GLY ALA PRO ARG PHE ILE LYS GLN VAL LEU SER SEQRES 11 A 238 ASP LEU GLN ARG ASP LEU ASP SER HIS THR LEU ILE MET SEQRES 12 A 238 GLY ALA PHE ASN THR PRO LEU SER THR LEU ASP ARG SER SEQRES 13 A 238 THR ARG GLN LYS VAL ASN LYS ASP THR GLN GLU LEU ASN SEQRES 14 A 238 SER ALA LEU HIS GLN ALA ASP LEU ILE ASP ILE TYR ARG SEQRES 15 A 238 THR LEU HIS PRO LYS SER THR GLU TYR THR PHE PHE SER SEQRES 16 A 238 ALA PRO HIS HIS THR TYR SER LYS ILE ASP HIS ILE VAL SEQRES 17 A 238 GLY SER LYS ALA LEU LEU SER LYS CYS LYS ARG THR GLU SEQRES 18 A 238 ILE ILE THR ASN LYS LEU SER ASP HIS SER ALA ILE LYS SEQRES 19 A 238 LEU GLU LEU ARG SEQRES 1 D 18 DG DC DT DC DC DT DT DT DT DT DA DA DG SEQRES 2 D 18 DG DG DC DT DA SEQRES 1 E 18 DA DG DC DC DC DT DT DA DA DA DA DA DG SEQRES 2 E 18 DG DA DG DC DT SEQRES 1 B 238 MET THR GLY SER ASN SER HIS ILE THR ILE LEU THR LEU SEQRES 2 B 238 ASN ILE ASN GLY LEU ASN SER ALA ILE LYS ARG HIS ARG SEQRES 3 B 238 LEU ALA SER TRP ILE LYS SER GLN ASP PRO SER VAL CYS SEQRES 4 B 238 CYS ILE GLN GLU THR HIS LEU THR CYS ARG ASP THR HIS SEQRES 5 B 238 ARG LEU LYS ILE LYS GLY TRP ARG LYS ILE TYR GLN ALA SEQRES 6 B 238 ASN GLY LYS GLN LYS LYS ALA GLY VAL ALA ILE LEU VAL SEQRES 7 B 238 SER ASP LYS THR ASP PHE LYS PRO THR LYS ILE LYS ARG SEQRES 8 B 238 ASP LYS GLU GLY HIS TYR ILE MET VAL LYS GLY SER ILE SEQRES 9 B 238 GLN GLN GLU GLU LEU THR ILE LEU ASN ILE TYR ALA PRO SEQRES 10 B 238 ASN THR GLY ALA PRO ARG PHE ILE LYS GLN VAL LEU SER SEQRES 11 B 238 ASP LEU GLN ARG ASP LEU ASP SER HIS THR LEU ILE MET SEQRES 12 B 238 GLY ALA PHE ASN THR PRO LEU SER THR LEU ASP ARG SER SEQRES 13 B 238 THR ARG GLN LYS VAL ASN LYS ASP THR GLN GLU LEU ASN SEQRES 14 B 238 SER ALA LEU HIS GLN ALA ASP LEU ILE ASP ILE TYR ARG SEQRES 15 B 238 THR LEU HIS PRO LYS SER THR GLU TYR THR PHE PHE SER SEQRES 16 B 238 ALA PRO HIS HIS THR TYR SER LYS ILE ASP HIS ILE VAL SEQRES 17 B 238 GLY SER LYS ALA LEU LEU SER LYS CYS LYS ARG THR GLU SEQRES 18 B 238 ILE ILE THR ASN LYS LEU SER ASP HIS SER ALA ILE LYS SEQRES 19 B 238 LEU GLU LEU ARG SEQRES 1 F 18 DG DC DT DC DC DT DT DT DT DT DA DA DG SEQRES 2 F 18 DG DG DC DT DA SEQRES 1 G 18 DA DG DC DC DC DT DT DA DA DA DA DA DG SEQRES 2 G 18 DG DA DG DC DT HELIX 1 AA1 SER A 20 ASP A 35 1 16 HELIX 2 AA2 ASP A 50 LEU A 54 5 5 HELIX 3 AA3 GLY A 120 LEU A 132 1 13 HELIX 4 AA4 GLN A 133 LEU A 136 5 4 HELIX 5 AA5 SER A 151 ARG A 155 5 5 HELIX 6 AA6 ASN A 162 ALA A 175 1 14 HELIX 7 AA7 ILE A 180 HIS A 185 1 6 HELIX 8 AA8 ALA A 212 CYS A 217 5 6 HELIX 9 AA9 SER B 20 ASP B 35 1 16 HELIX 10 AB1 THR B 47 LEU B 54 5 8 HELIX 11 AB2 GLY B 120 LEU B 132 1 13 HELIX 12 AB3 GLN B 133 LEU B 136 5 4 HELIX 13 AB4 SER B 151 ARG B 155 5 5 HELIX 14 AB5 ASN B 162 ALA B 175 1 14 HELIX 15 AB6 ILE B 180 HIS B 185 1 6 HELIX 16 AB7 ALA B 212 SER B 215 5 4 SHEET 1 AA1 6 LYS A 61 ALA A 65 0 SHEET 2 AA1 6 VAL A 74 VAL A 78 -1 O ILE A 76 N TYR A 63 SHEET 3 AA1 6 VAL A 38 GLN A 42 -1 N CYS A 39 O LEU A 77 SHEET 4 AA1 6 THR A 9 ASN A 14 1 N LEU A 11 O CYS A 40 SHEET 5 AA1 6 ALA A 232 GLU A 236 -1 O LEU A 235 N ILE A 10 SHEET 6 AA1 6 ARG A 219 ILE A 223 -1 N ILE A 223 O ALA A 232 SHEET 1 AA2 6 LYS A 88 ARG A 91 0 SHEET 2 AA2 6 TYR A 97 ILE A 104 -1 O MET A 99 N LYS A 90 SHEET 3 AA2 6 GLU A 107 TYR A 115 -1 O ASN A 113 N ILE A 98 SHEET 4 AA2 6 THR A 140 ALA A 145 1 O LEU A 141 N LEU A 112 SHEET 5 AA2 6 ASP A 205 SER A 210 -1 O VAL A 208 N ILE A 142 SHEET 6 AA2 6 LEU A 177 ASP A 179 -1 N ILE A 178 O GLY A 209 SHEET 1 AA3 2 PHE A 193 SER A 195 0 SHEET 2 AA3 2 THR A 200 SER A 202 -1 O THR A 200 N SER A 195 SHEET 1 AA4 6 LYS B 61 ALA B 65 0 SHEET 2 AA4 6 VAL B 74 VAL B 78 -1 O ILE B 76 N TYR B 63 SHEET 3 AA4 6 VAL B 38 GLN B 42 -1 N CYS B 39 O LEU B 77 SHEET 4 AA4 6 THR B 9 ASN B 14 1 N LEU B 11 O CYS B 40 SHEET 5 AA4 6 ALA B 232 LEU B 237 -1 O LEU B 235 N ILE B 10 SHEET 6 AA4 6 CYS B 217 ILE B 223 -1 N ILE B 223 O ALA B 232 SHEET 1 AA5 6 LYS B 88 ARG B 91 0 SHEET 2 AA5 6 TYR B 97 ILE B 104 -1 O MET B 99 N LYS B 90 SHEET 3 AA5 6 GLU B 107 TYR B 115 -1 O ASN B 113 N ILE B 98 SHEET 4 AA5 6 THR B 140 ALA B 145 1 O LEU B 141 N LEU B 112 SHEET 5 AA5 6 ASP B 205 SER B 210 -1 O VAL B 208 N ILE B 142 SHEET 6 AA5 6 LEU B 177 ASP B 179 -1 N ILE B 178 O GLY B 209 SHEET 1 AA6 2 PHE B 193 SER B 195 0 SHEET 2 AA6 2 THR B 200 SER B 202 -1 O SER B 202 N PHE B 193 CRYST1 100.774 100.774 140.770 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007104 0.00000