data_7N9A # _entry.id 7N9A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.347 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7N9A ? ? WWPDB D_1000256095 ? ? EMDB EMD-24253 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details ;Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes-CovS RBD with NB21 ; _pdbx_database_related.db_id EMD-24253 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7N9A _pdbx_database_status.recvd_initial_deposition_date 2021-06-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sun, D.' 1 ? 'Zhang, C.' 2 ? 'Shi, Y.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, D.' 1 ? primary 'Shi, Y.' 2 ? primary 'Zhang, C.' 3 ? primary 'Huang, W.' 4 ? primary 'Dina, S.D.' 5 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7N9A _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7N9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nanobody Nb21' 12593.007 1 ? ? ? ? 2 polymer man 'Spike protein S1' 21901.570 1 ? ? 'Receptor Binding Domain' ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Spike glycoprotein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QVQLVESGGGLVQAGGSLRLSCAVSGLGAHRVGWFRRAPGKEREFVAAIGANGGNTNYLDSVKGRFTISRDNAKNTIYLQ MNSLKPQDTAVYYCAARDIETAEYTYWGQGTQVTVSS ; ;QVQLVESGGGLVQAGGSLRLSCAVSGLGAHRVGWFRRAPGKEREFVAAIGANGGNTNYLDSVKGRFTISRDNAKNTIYLQ MNSLKPQDTAVYYCAARDIETAEYTYWGQGTQVTVSS ; A ? 2 'polypeptide(L)' no no ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK ; ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 ALA n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 ALA n 1 24 VAL n 1 25 SER n 1 26 GLY n 1 27 LEU n 1 28 GLY n 1 29 ALA n 1 30 HIS n 1 31 ARG n 1 32 VAL n 1 33 GLY n 1 34 TRP n 1 35 PHE n 1 36 ARG n 1 37 ARG n 1 38 ALA n 1 39 PRO n 1 40 GLY n 1 41 LYS n 1 42 GLU n 1 43 ARG n 1 44 GLU n 1 45 PHE n 1 46 VAL n 1 47 ALA n 1 48 ALA n 1 49 ILE n 1 50 GLY n 1 51 ALA n 1 52 ASN n 1 53 GLY n 1 54 GLY n 1 55 ASN n 1 56 THR n 1 57 ASN n 1 58 TYR n 1 59 LEU n 1 60 ASP n 1 61 SER n 1 62 VAL n 1 63 LYS n 1 64 GLY n 1 65 ARG n 1 66 PHE n 1 67 THR n 1 68 ILE n 1 69 SER n 1 70 ARG n 1 71 ASP n 1 72 ASN n 1 73 ALA n 1 74 LYS n 1 75 ASN n 1 76 THR n 1 77 ILE n 1 78 TYR n 1 79 LEU n 1 80 GLN n 1 81 MET n 1 82 ASN n 1 83 SER n 1 84 LEU n 1 85 LYS n 1 86 PRO n 1 87 GLN n 1 88 ASP n 1 89 THR n 1 90 ALA n 1 91 VAL n 1 92 TYR n 1 93 TYR n 1 94 CYS n 1 95 ALA n 1 96 ALA n 1 97 ARG n 1 98 ASP n 1 99 ILE n 1 100 GLU n 1 101 THR n 1 102 ALA n 1 103 GLU n 1 104 TYR n 1 105 THR n 1 106 TYR n 1 107 TRP n 1 108 GLY n 1 109 GLN n 1 110 GLY n 1 111 THR n 1 112 GLN n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 SER n 1 117 SER n 2 1 ASN n 2 2 LEU n 2 3 CYS n 2 4 PRO n 2 5 PHE n 2 6 GLY n 2 7 GLU n 2 8 VAL n 2 9 PHE n 2 10 ASN n 2 11 ALA n 2 12 THR n 2 13 ARG n 2 14 PHE n 2 15 ALA n 2 16 SER n 2 17 VAL n 2 18 TYR n 2 19 ALA n 2 20 TRP n 2 21 ASN n 2 22 ARG n 2 23 LYS n 2 24 ARG n 2 25 ILE n 2 26 SER n 2 27 ASN n 2 28 CYS n 2 29 VAL n 2 30 ALA n 2 31 ASP n 2 32 TYR n 2 33 SER n 2 34 VAL n 2 35 LEU n 2 36 TYR n 2 37 ASN n 2 38 SER n 2 39 ALA n 2 40 SER n 2 41 PHE n 2 42 SER n 2 43 THR n 2 44 PHE n 2 45 LYS n 2 46 CYS n 2 47 TYR n 2 48 GLY n 2 49 VAL n 2 50 SER n 2 51 PRO n 2 52 THR n 2 53 LYS n 2 54 LEU n 2 55 ASN n 2 56 ASP n 2 57 LEU n 2 58 CYS n 2 59 PHE n 2 60 THR n 2 61 ASN n 2 62 VAL n 2 63 TYR n 2 64 ALA n 2 65 ASP n 2 66 SER n 2 67 PHE n 2 68 VAL n 2 69 ILE n 2 70 ARG n 2 71 GLY n 2 72 ASP n 2 73 GLU n 2 74 VAL n 2 75 ARG n 2 76 GLN n 2 77 ILE n 2 78 ALA n 2 79 PRO n 2 80 GLY n 2 81 GLN n 2 82 THR n 2 83 GLY n 2 84 LYS n 2 85 ILE n 2 86 ALA n 2 87 ASP n 2 88 TYR n 2 89 ASN n 2 90 TYR n 2 91 LYS n 2 92 LEU n 2 93 PRO n 2 94 ASP n 2 95 ASP n 2 96 PHE n 2 97 THR n 2 98 GLY n 2 99 CYS n 2 100 VAL n 2 101 ILE n 2 102 ALA n 2 103 TRP n 2 104 ASN n 2 105 SER n 2 106 ASN n 2 107 ASN n 2 108 LEU n 2 109 ASP n 2 110 SER n 2 111 LYS n 2 112 VAL n 2 113 GLY n 2 114 GLY n 2 115 ASN n 2 116 TYR n 2 117 ASN n 2 118 TYR n 2 119 LEU n 2 120 TYR n 2 121 ARG n 2 122 LEU n 2 123 PHE n 2 124 ARG n 2 125 LYS n 2 126 SER n 2 127 ASN n 2 128 LEU n 2 129 LYS n 2 130 PRO n 2 131 PHE n 2 132 GLU n 2 133 ARG n 2 134 ASP n 2 135 ILE n 2 136 SER n 2 137 THR n 2 138 GLU n 2 139 ILE n 2 140 TYR n 2 141 GLN n 2 142 ALA n 2 143 GLY n 2 144 SER n 2 145 THR n 2 146 PRO n 2 147 CYS n 2 148 ASN n 2 149 GLY n 2 150 VAL n 2 151 GLU n 2 152 GLY n 2 153 PHE n 2 154 ASN n 2 155 CYS n 2 156 TYR n 2 157 PHE n 2 158 PRO n 2 159 LEU n 2 160 GLN n 2 161 SER n 2 162 TYR n 2 163 GLY n 2 164 PHE n 2 165 GLN n 2 166 PRO n 2 167 THR n 2 168 ASN n 2 169 GLY n 2 170 VAL n 2 171 GLY n 2 172 TYR n 2 173 GLN n 2 174 PRO n 2 175 TYR n 2 176 ARG n 2 177 VAL n 2 178 VAL n 2 179 VAL n 2 180 LEU n 2 181 SER n 2 182 PHE n 2 183 GLU n 2 184 LEU n 2 185 LEU n 2 186 HIS n 2 187 ALA n 2 188 PRO n 2 189 ALA n 2 190 THR n 2 191 VAL n 2 192 CYS n 2 193 GLY n 2 194 PRO n 2 195 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 117 ? ? ? ? ? ? ? ? ? 'Lama glama' 9844 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 195 '2019-nCoV, SARS-CoV-2, COVID-19 virus' ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7N9A 7N9A ? 1 ? 1 2 UNP SPIKE_SARS2 P0DTC2 ? 2 ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK ; 334 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7N9A A 1 ? 117 ? 7N9A 1 ? 117 ? 1 117 2 2 7N9A E 1 ? 195 ? P0DTC2 334 ? 528 ? 334 528 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7N9A _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7N9A _struct.title ;Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes-CovS RBD with NB21 ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7N9A _struct_keywords.text 'CovS NB21 nanobody, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 85 ? THR A 89 ? LYS A 85 THR A 89 5 ? 5 HELX_P HELX_P2 AA2 PRO B 4 ? ASN B 10 ? PRO E 337 ASN E 343 1 ? 7 HELX_P HELX_P3 AA3 ASP B 31 ? SER B 38 ? ASP E 364 SER E 371 1 ? 8 HELX_P HELX_P4 AA4 PRO B 51 ? LEU B 57 ? PRO E 384 LEU E 390 5 ? 7 HELX_P HELX_P5 AA5 ASP B 72 ? ARG B 75 ? ASP E 405 ARG E 408 5 ? 4 HELX_P HELX_P6 AA6 GLY B 83 ? ASN B 89 ? GLY E 416 ASN E 422 1 ? 7 HELX_P HELX_P7 AA7 GLY B 169 ? TYR B 172 ? GLY E 502 TYR E 505 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 22 A CYS 94 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf2 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 28 SG ? ? E CYS 336 E CYS 361 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf3 disulf ? ? B CYS 46 SG ? ? ? 1_555 B CYS 99 SG ? ? E CYS 379 E CYS 432 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? B CYS 58 SG ? ? ? 1_555 B CYS 192 SG ? ? E CYS 391 E CYS 525 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf5 disulf ? ? B CYS 147 SG ? ? ? 1_555 B CYS 155 SG ? ? E CYS 480 E CYS 488 1_555 ? ? ? ? ? ? ? 2.037 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 5 ? AA3 ? 4 ? AA4 ? 5 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 4 ? SER A 7 ? LEU A 4 SER A 7 AA1 2 ARG A 19 ? VAL A 24 ? ARG A 19 VAL A 24 AA1 3 THR A 76 ? MET A 81 ? THR A 76 MET A 81 AA1 4 PHE A 66 ? ARG A 70 ? PHE A 66 ARG A 70 AA2 1 LEU A 11 ? GLN A 13 ? LEU A 11 GLN A 13 AA2 2 THR A 111 ? SER A 116 ? THR A 111 SER A 116 AA2 3 ALA A 90 ? ALA A 96 ? ALA A 90 ALA A 96 AA2 4 VAL A 32 ? ARG A 37 ? VAL A 32 ARG A 37 AA2 5 GLU A 44 ? ILE A 49 ? GLU A 44 ILE A 49 AA3 1 LEU A 11 ? GLN A 13 ? LEU A 11 GLN A 13 AA3 2 THR A 111 ? SER A 116 ? THR A 111 SER A 116 AA3 3 ALA A 90 ? ALA A 96 ? ALA A 90 ALA A 96 AA3 4 TYR A 106 ? TRP A 107 ? TYR A 106 TRP A 107 AA4 1 ASN B 21 ? ILE B 25 ? ASN E 354 ILE E 358 AA4 2 ASN B 61 ? ARG B 70 ? ASN E 394 ARG E 403 AA4 3 PRO B 174 ? GLU B 183 ? PRO E 507 GLU E 516 AA4 4 GLY B 98 ? ASN B 104 ? GLY E 431 ASN E 437 AA4 5 THR B 43 ? TYR B 47 ? THR E 376 TYR E 380 AA5 1 LEU B 119 ? ARG B 121 ? LEU E 452 ARG E 454 AA5 2 LEU B 159 ? SER B 161 ? LEU E 492 SER E 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL A 5 O ALA A 23 ? O ALA A 23 AA1 2 3 N LEU A 20 ? N LEU A 20 O LEU A 79 ? O LEU A 79 AA1 3 4 O GLN A 80 ? O GLN A 80 N THR A 67 ? N THR A 67 AA2 1 2 N VAL A 12 ? N VAL A 12 O THR A 114 ? O THR A 114 AA2 2 3 O THR A 111 ? O THR A 111 N TYR A 92 ? N TYR A 92 AA2 3 4 O TYR A 93 ? O TYR A 93 N PHE A 35 ? N PHE A 35 AA2 4 5 N TRP A 34 ? N TRP A 34 O ALA A 47 ? O ALA A 47 AA3 1 2 N VAL A 12 ? N VAL A 12 O THR A 114 ? O THR A 114 AA3 2 3 O THR A 111 ? O THR A 111 N TYR A 92 ? N TYR A 92 AA3 3 4 N ALA A 96 ? N ALA A 96 O TYR A 106 ? O TYR A 106 AA4 1 2 N LYS B 23 ? N LYS E 356 O ALA B 64 ? O ALA E 397 AA4 2 3 N PHE B 67 ? N PHE E 400 O VAL B 177 ? O VAL E 510 AA4 3 4 O VAL B 178 ? O VAL E 511 N ILE B 101 ? N ILE E 434 AA4 4 5 O GLY B 98 ? O GLY E 431 N TYR B 47 ? N TYR E 380 AA5 1 2 N TYR B 120 ? N TYR E 453 O GLN B 160 ? O GLN E 493 # _atom_sites.entry_id 7N9A _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 TRP 34 34 34 TRP TRP A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 MET 81 81 81 MET MET A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 TRP 107 107 107 TRP TRP A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n B 2 1 ASN 1 334 334 ASN ASN E . n B 2 2 LEU 2 335 335 LEU LEU E . n B 2 3 CYS 3 336 336 CYS CYS E . n B 2 4 PRO 4 337 337 PRO PRO E . n B 2 5 PHE 5 338 338 PHE PHE E . n B 2 6 GLY 6 339 339 GLY GLY E . n B 2 7 GLU 7 340 340 GLU GLU E . n B 2 8 VAL 8 341 341 VAL VAL E . n B 2 9 PHE 9 342 342 PHE PHE E . n B 2 10 ASN 10 343 343 ASN ASN E . n B 2 11 ALA 11 344 344 ALA ALA E . n B 2 12 THR 12 345 345 THR THR E . n B 2 13 ARG 13 346 346 ARG ARG E . n B 2 14 PHE 14 347 347 PHE PHE E . n B 2 15 ALA 15 348 348 ALA ALA E . n B 2 16 SER 16 349 349 SER SER E . n B 2 17 VAL 17 350 350 VAL VAL E . n B 2 18 TYR 18 351 351 TYR TYR E . n B 2 19 ALA 19 352 352 ALA ALA E . n B 2 20 TRP 20 353 353 TRP TRP E . n B 2 21 ASN 21 354 354 ASN ASN E . n B 2 22 ARG 22 355 355 ARG ARG E . n B 2 23 LYS 23 356 356 LYS LYS E . n B 2 24 ARG 24 357 357 ARG ARG E . n B 2 25 ILE 25 358 358 ILE ILE E . n B 2 26 SER 26 359 359 SER SER E . n B 2 27 ASN 27 360 360 ASN ASN E . n B 2 28 CYS 28 361 361 CYS CYS E . n B 2 29 VAL 29 362 362 VAL VAL E . n B 2 30 ALA 30 363 363 ALA ALA E . n B 2 31 ASP 31 364 364 ASP ASP E . n B 2 32 TYR 32 365 365 TYR TYR E . n B 2 33 SER 33 366 366 SER SER E . n B 2 34 VAL 34 367 367 VAL VAL E . n B 2 35 LEU 35 368 368 LEU LEU E . n B 2 36 TYR 36 369 369 TYR TYR E . n B 2 37 ASN 37 370 370 ASN ASN E . n B 2 38 SER 38 371 371 SER SER E . n B 2 39 ALA 39 372 372 ALA ALA E . n B 2 40 SER 40 373 373 SER SER E . n B 2 41 PHE 41 374 374 PHE PHE E . n B 2 42 SER 42 375 375 SER SER E . n B 2 43 THR 43 376 376 THR THR E . n B 2 44 PHE 44 377 377 PHE PHE E . n B 2 45 LYS 45 378 378 LYS LYS E . n B 2 46 CYS 46 379 379 CYS CYS E . n B 2 47 TYR 47 380 380 TYR TYR E . n B 2 48 GLY 48 381 381 GLY GLY E . n B 2 49 VAL 49 382 382 VAL VAL E . n B 2 50 SER 50 383 383 SER SER E . n B 2 51 PRO 51 384 384 PRO PRO E . n B 2 52 THR 52 385 385 THR THR E . n B 2 53 LYS 53 386 386 LYS LYS E . n B 2 54 LEU 54 387 387 LEU LEU E . n B 2 55 ASN 55 388 388 ASN ASN E . n B 2 56 ASP 56 389 389 ASP ASP E . n B 2 57 LEU 57 390 390 LEU LEU E . n B 2 58 CYS 58 391 391 CYS CYS E . n B 2 59 PHE 59 392 392 PHE PHE E . n B 2 60 THR 60 393 393 THR THR E . n B 2 61 ASN 61 394 394 ASN ASN E . n B 2 62 VAL 62 395 395 VAL VAL E . n B 2 63 TYR 63 396 396 TYR TYR E . n B 2 64 ALA 64 397 397 ALA ALA E . n B 2 65 ASP 65 398 398 ASP ASP E . n B 2 66 SER 66 399 399 SER SER E . n B 2 67 PHE 67 400 400 PHE PHE E . n B 2 68 VAL 68 401 401 VAL VAL E . n B 2 69 ILE 69 402 402 ILE ILE E . n B 2 70 ARG 70 403 403 ARG ARG E . n B 2 71 GLY 71 404 404 GLY GLY E . n B 2 72 ASP 72 405 405 ASP ASP E . n B 2 73 GLU 73 406 406 GLU GLU E . n B 2 74 VAL 74 407 407 VAL VAL E . n B 2 75 ARG 75 408 408 ARG ARG E . n B 2 76 GLN 76 409 409 GLN GLN E . n B 2 77 ILE 77 410 410 ILE ILE E . n B 2 78 ALA 78 411 411 ALA ALA E . n B 2 79 PRO 79 412 412 PRO PRO E . n B 2 80 GLY 80 413 413 GLY GLY E . n B 2 81 GLN 81 414 414 GLN GLN E . n B 2 82 THR 82 415 415 THR THR E . n B 2 83 GLY 83 416 416 GLY GLY E . n B 2 84 LYS 84 417 417 LYS LYS E . n B 2 85 ILE 85 418 418 ILE ILE E . n B 2 86 ALA 86 419 419 ALA ALA E . n B 2 87 ASP 87 420 420 ASP ASP E . n B 2 88 TYR 88 421 421 TYR TYR E . n B 2 89 ASN 89 422 422 ASN ASN E . n B 2 90 TYR 90 423 423 TYR TYR E . n B 2 91 LYS 91 424 424 LYS LYS E . n B 2 92 LEU 92 425 425 LEU LEU E . n B 2 93 PRO 93 426 426 PRO PRO E . n B 2 94 ASP 94 427 427 ASP ASP E . n B 2 95 ASP 95 428 428 ASP ASP E . n B 2 96 PHE 96 429 429 PHE PHE E . n B 2 97 THR 97 430 430 THR THR E . n B 2 98 GLY 98 431 431 GLY GLY E . n B 2 99 CYS 99 432 432 CYS CYS E . n B 2 100 VAL 100 433 433 VAL VAL E . n B 2 101 ILE 101 434 434 ILE ILE E . n B 2 102 ALA 102 435 435 ALA ALA E . n B 2 103 TRP 103 436 436 TRP TRP E . n B 2 104 ASN 104 437 437 ASN ASN E . n B 2 105 SER 105 438 438 SER SER E . n B 2 106 ASN 106 439 439 ASN ASN E . n B 2 107 ASN 107 440 440 ASN ASN E . n B 2 108 LEU 108 441 441 LEU LEU E . n B 2 109 ASP 109 442 442 ASP ASP E . n B 2 110 SER 110 443 443 SER SER E . n B 2 111 LYS 111 444 444 LYS LYS E . n B 2 112 VAL 112 445 445 VAL VAL E . n B 2 113 GLY 113 446 446 GLY GLY E . n B 2 114 GLY 114 447 447 GLY GLY E . n B 2 115 ASN 115 448 448 ASN ASN E . n B 2 116 TYR 116 449 449 TYR TYR E . n B 2 117 ASN 117 450 450 ASN ASN E . n B 2 118 TYR 118 451 451 TYR TYR E . n B 2 119 LEU 119 452 452 LEU LEU E . n B 2 120 TYR 120 453 453 TYR TYR E . n B 2 121 ARG 121 454 454 ARG ARG E . n B 2 122 LEU 122 455 455 LEU LEU E . n B 2 123 PHE 123 456 456 PHE PHE E . n B 2 124 ARG 124 457 457 ARG ARG E . n B 2 125 LYS 125 458 458 LYS LYS E . n B 2 126 SER 126 459 459 SER SER E . n B 2 127 ASN 127 460 460 ASN ASN E . n B 2 128 LEU 128 461 461 LEU LEU E . n B 2 129 LYS 129 462 462 LYS LYS E . n B 2 130 PRO 130 463 463 PRO PRO E . n B 2 131 PHE 131 464 464 PHE PHE E . n B 2 132 GLU 132 465 465 GLU GLU E . n B 2 133 ARG 133 466 466 ARG ARG E . n B 2 134 ASP 134 467 467 ASP ASP E . n B 2 135 ILE 135 468 468 ILE ILE E . n B 2 136 SER 136 469 469 SER SER E . n B 2 137 THR 137 470 470 THR THR E . n B 2 138 GLU 138 471 471 GLU GLU E . n B 2 139 ILE 139 472 472 ILE ILE E . n B 2 140 TYR 140 473 473 TYR TYR E . n B 2 141 GLN 141 474 474 GLN GLN E . n B 2 142 ALA 142 475 475 ALA ALA E . n B 2 143 GLY 143 476 476 GLY GLY E . n B 2 144 SER 144 477 477 SER SER E . n B 2 145 THR 145 478 478 THR THR E . n B 2 146 PRO 146 479 479 PRO PRO E . n B 2 147 CYS 147 480 480 CYS CYS E . n B 2 148 ASN 148 481 481 ASN ASN E . n B 2 149 GLY 149 482 482 GLY GLY E . n B 2 150 VAL 150 483 483 VAL VAL E . n B 2 151 GLU 151 484 484 GLU GLU E . n B 2 152 GLY 152 485 485 GLY GLY E . n B 2 153 PHE 153 486 486 PHE PHE E . n B 2 154 ASN 154 487 487 ASN ASN E . n B 2 155 CYS 155 488 488 CYS CYS E . n B 2 156 TYR 156 489 489 TYR TYR E . n B 2 157 PHE 157 490 490 PHE PHE E . n B 2 158 PRO 158 491 491 PRO PRO E . n B 2 159 LEU 159 492 492 LEU LEU E . n B 2 160 GLN 160 493 493 GLN GLN E . n B 2 161 SER 161 494 494 SER SER E . n B 2 162 TYR 162 495 495 TYR TYR E . n B 2 163 GLY 163 496 496 GLY GLY E . n B 2 164 PHE 164 497 497 PHE PHE E . n B 2 165 GLN 165 498 498 GLN GLN E . n B 2 166 PRO 166 499 499 PRO PRO E . n B 2 167 THR 167 500 500 THR THR E . n B 2 168 ASN 168 501 501 ASN ASN E . n B 2 169 GLY 169 502 502 GLY GLY E . n B 2 170 VAL 170 503 503 VAL VAL E . n B 2 171 GLY 171 504 504 GLY GLY E . n B 2 172 TYR 172 505 505 TYR TYR E . n B 2 173 GLN 173 506 506 GLN GLN E . n B 2 174 PRO 174 507 507 PRO PRO E . n B 2 175 TYR 175 508 508 TYR TYR E . n B 2 176 ARG 176 509 509 ARG ARG E . n B 2 177 VAL 177 510 510 VAL VAL E . n B 2 178 VAL 178 511 511 VAL VAL E . n B 2 179 VAL 179 512 512 VAL VAL E . n B 2 180 LEU 180 513 513 LEU LEU E . n B 2 181 SER 181 514 514 SER SER E . n B 2 182 PHE 182 515 515 PHE PHE E . n B 2 183 GLU 183 516 516 GLU GLU E . n B 2 184 LEU 184 517 517 LEU LEU E . n B 2 185 LEU 185 518 518 LEU LEU E . n B 2 186 HIS 186 519 519 HIS HIS E . n B 2 187 ALA 187 520 520 ALA ALA E . n B 2 188 PRO 188 521 521 PRO PRO E . n B 2 189 ALA 189 522 522 ALA ALA E . n B 2 190 THR 190 523 523 THR THR E . n B 2 191 VAL 191 524 524 VAL VAL E . n B 2 192 CYS 192 525 525 CYS CYS E . n B 2 193 GLY 193 526 526 GLY GLY E . n B 2 194 PRO 194 527 527 PRO PRO E . n B 2 195 LYS 195 528 528 LYS LYS E . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-08-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _em_3d_fitting.entry_id 7N9A _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7N9A _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 97000 _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'SARS-CoV-2 Spike S with Nanobody Nb21' 'MULTIPLE SOURCES' COMPLEX '1, 2' ? ? 2 1 ? 'SARS-CoV-2 Spike Protein Receptor-Binding Domain' RECOMBINANT COMPLEX 2 ? ? 3 1 ? 'Nanobody Nb21' RECOMBINANT COMPLEX 1 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7N9A _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7N9A _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7N9A _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A THR 101 ? ? OH E TYR 489 ? ? 2.13 2 1 OD1 E ASN 448 ? ? ND2 E ASN 450 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 22 ? ? CB A CYS 22 ? ? SG A CYS 22 ? ? 125.79 114.20 11.59 1.10 N 2 1 CA E PRO 499 ? ? N E PRO 499 ? ? CD E PRO 499 ? ? 102.71 111.70 -8.99 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 98 ? ? -110.82 -108.59 2 1 THR A 101 ? ? -114.65 -101.51 3 1 PRO E 337 ? ? -80.41 45.57 4 1 ASN E 422 ? ? -132.32 -69.01 5 1 LEU E 441 ? ? -94.51 -63.07 6 1 LEU E 455 ? ? -128.97 -71.13 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 2 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 3 3 ? ? 9844 ? ? 'Lama glama' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 2 ? 9606 'Homo sapiens' 'Mammalian expression vector BsrGI-MCS-pcDNA3.1' ? 3 3 ? 469008 'Escherichia coli' ? 'BL21(DE3)' # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)' 'United States' 'R35 GM137905' 1 'National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)' 'United States' 'R35 GM128641' 2 'National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)' 'United States' 'U24 GM129539' 3 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #