HEADER TRANSFERASE 17-JUN-21 7N9D TITLE I74A MUTANT OF THE ISOPENTENYL PHOSPHATE KINASE FROM CANDIDATUS TITLE 2 METHANOMETHYLOPHILUS ALVUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENTENYL PHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IPK; COMPND 5 EC: 2.7.4.26; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATUS METHANOMETHYLOPHILUS ALVUS; SOURCE 3 ORGANISM_TAXID: 1291540; SOURCE 4 GENE: BKD89_07040; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRANSFERASE ATP BIOCATALYSIS ISOPRENOIDS ENZYME PROMISCUITY, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.THOMAS,S.SINGH,B.P.JOHNSON REVDAT 4 18-OCT-23 7N9D 1 REMARK REVDAT 3 02-FEB-22 7N9D 1 JRNL REVDAT 2 29-DEC-21 7N9D 1 JRNL REVDAT 1 22-DEC-21 7N9D 0 JRNL AUTH B.P.JOHNSON,V.KUMAR,E.M.SCULL,L.M.THOMAS,C.R.BOURNE,S.SINGH JRNL TITL MOLECULAR BASIS FOR THE SUBSTRATE PROMISCUITY OF ISOPENTENYL JRNL TITL 2 PHOSPHATE KINASE FROM CANDIDATUS METHANOMETHYLOPHILUS ALVUS JRNL TITL 3 . JRNL REF ACS CHEM.BIOL. V. 17 85 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 34905349 JRNL DOI 10.1021/ACSCHEMBIO.1C00655 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 41415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 3728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0600 - 6.2800 1.00 2779 142 0.1739 0.1747 REMARK 3 2 6.2800 - 4.9900 1.00 2780 140 0.1785 0.2157 REMARK 3 3 4.9900 - 4.3600 1.00 2769 138 0.1410 0.1573 REMARK 3 4 4.3600 - 3.9700 1.00 2746 140 0.1494 0.1595 REMARK 3 5 3.9700 - 3.6800 1.00 2763 144 0.1565 0.1939 REMARK 3 6 3.6800 - 3.4700 1.00 2762 142 0.1793 0.1852 REMARK 3 7 3.4700 - 3.2900 1.00 2779 143 0.1850 0.2182 REMARK 3 8 3.2900 - 3.1500 1.00 2762 138 0.1913 0.2101 REMARK 3 9 3.1500 - 3.0300 1.00 2747 140 0.2103 0.2239 REMARK 3 10 3.0300 - 2.9200 1.00 2770 143 0.2169 0.2891 REMARK 3 11 2.9200 - 2.8300 1.00 2782 137 0.2178 0.3031 REMARK 3 12 2.8300 - 2.7500 1.00 2757 145 0.2363 0.2954 REMARK 3 13 2.7500 - 2.6800 1.00 2765 144 0.2498 0.3782 REMARK 3 14 2.6800 - 2.6100 1.00 2748 142 0.2560 0.3085 REMARK 3 15 2.6100 - 2.5500 1.00 2770 141 0.2510 0.3177 REMARK 3 16 2.5500 - 2.5000 0.99 2727 135 0.2570 0.3359 REMARK 3 17 2.5000 - 2.4500 0.99 2733 142 0.2521 0.2270 REMARK 3 18 2.4500 - 2.4000 0.98 2747 136 0.2494 0.3037 REMARK 3 19 2.4000 - 2.3600 0.98 2666 138 0.2495 0.3187 REMARK 3 20 2.3600 - 2.3200 0.98 2728 141 0.2620 0.2806 REMARK 3 21 2.3200 - 2.2800 0.97 2696 134 0.2622 0.2985 REMARK 3 22 2.2800 - 2.2500 0.96 2650 132 0.2691 0.3114 REMARK 3 23 2.2500 - 2.2200 0.95 2626 132 0.2839 0.3552 REMARK 3 24 2.2200 - 2.1800 0.94 2581 132 0.2744 0.2840 REMARK 3 25 2.1800 - 2.1500 0.94 2636 132 0.2893 0.3491 REMARK 3 26 2.1500 - 2.1300 0.95 2601 131 0.2903 0.3390 REMARK 3 27 2.1300 - 2.1000 0.90 2507 124 0.2958 0.3697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.292 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.491 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4023 REMARK 3 ANGLE : 0.645 5430 REMARK 3 CHIRALITY : 0.045 624 REMARK 3 PLANARITY : 0.004 693 REMARK 3 DIHEDRAL : 12.489 581 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41416 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 12.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : 0.74500 REMARK 200 FOR SHELL : 1.189 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7LNV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 197 REMARK 465 GLU A 198 REMARK 465 LYS A 255 REMARK 465 GLY A 256 REMARK 465 GLY A 257 REMARK 465 MET A 258 REMARK 465 GLU A 259 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 ASP B 202 REMARK 465 ILE B 203 REMARK 465 THR B 204 REMARK 465 VAL B 205 REMARK 465 ALA B 206 REMARK 465 GLY B 256 REMARK 465 GLY B 257 REMARK 465 MET B 258 REMARK 465 GLU B 259 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 186 CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 188 CB CG1 CG2 CD1 REMARK 480 GLU A 190 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 64 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 161 72.91 50.73 REMARK 500 PRO A 179 45.18 -58.87 REMARK 500 VAL A 208 -15.01 -140.61 REMARK 500 ASN B 238 -1.58 76.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LNV RELATED DB: PDB REMARK 900 APO VERSION OF NATIVE PROTEIN REMARK 900 RELATED ID: 7LNU RELATED DB: PDB REMARK 900 NATIVE PROTEN REMARK 900 RELATED ID: 7LNT RELATED DB: PDB REMARK 900 NATIVE PROTEIN BOUND TO UNNATURAL LIGAND REMARK 900 RELATED ID: 7LNW RELATED DB: PDB REMARK 900 MUTANT PROTEIN BOUND TO UNNATURAL LIGAND REMARK 900 RELATED ID: 7LNX RELATED DB: PDB REMARK 900 MUTANT PROTEIN BOUND TO UNNATURAL LIGAND DBREF1 7N9D A 1 259 UNP A0A3G3II74_9EURY DBREF2 7N9D A A0A3G3II74 1 259 DBREF1 7N9D B 1 259 UNP A0A3G3II74_9EURY DBREF2 7N9D B A0A3G3II74 1 259 SEQADV 7N9D MET A -19 UNP A0A3G3II7 INITIATING METHIONINE SEQADV 7N9D GLY A -18 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER A -17 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER A -16 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS A -15 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS A -14 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS A -13 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS A -12 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS A -11 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS A -10 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER A -9 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER A -8 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D GLY A -7 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D LEU A -6 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D VAL A -5 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D PRO A -4 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D ARG A -3 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D GLY A -2 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER A -1 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS A 0 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D ALA A 74 UNP A0A3G3II7 ILE 74 ENGINEERED MUTATION SEQADV 7N9D MET B -19 UNP A0A3G3II7 INITIATING METHIONINE SEQADV 7N9D GLY B -18 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER B -17 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER B -16 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS B -15 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS B -14 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS B -13 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS B -12 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS B -11 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS B -10 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER B -9 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER B -8 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D GLY B -7 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D LEU B -6 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D VAL B -5 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D PRO B -4 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D ARG B -3 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D GLY B -2 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D SER B -1 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D HIS B 0 UNP A0A3G3II7 EXPRESSION TAG SEQADV 7N9D ALA B 74 UNP A0A3G3II7 ILE 74 ENGINEERED MUTATION SEQRES 1 A 279 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 279 LEU VAL PRO ARG GLY SER HIS MET ILE LEU ILE LYS LEU SEQRES 3 A 279 GLY GLY SER VAL ILE THR ASP LYS SER GLU TYR HIS LYS SEQRES 4 A 279 PHE ASN LYS GLU THR VAL SER ARG LEU ALA ASP GLU ILE SEQRES 5 A 279 ARG ARG SER GLY GLN ASP VAL MET VAL VAL HIS GLY ALA SEQRES 6 A 279 GLY SER PHE GLY HIS VAL ILE ALA LYS LYS TYR ALA ILE SEQRES 7 A 279 GLN ASP GLY HIS VAL ASP ASP GLY GLN ILE PRO ALA ALA SEQRES 8 A 279 ALA ARG ALA MET CYS ASP THR ARG GLU LEU SER SER MET SEQRES 9 A 279 VAL VAL GLU GLU LEU LEU ALA GLN GLY ILE PRO ALA VAL SEQRES 10 A 279 SER VAL ALA PRO GLY SER CYS PHE VAL MET GLU ASP GLY SEQRES 11 A 279 LYS LEU ILE VAL ASP ASN GLU GLU PRO ILE ARG ARG LEU SEQRES 12 A 279 ALA ASP LEU GLY ILE MET PRO VAL MET PHE GLY ASP VAL SEQRES 13 A 279 VAL PRO ASP ARG LYS LYS GLY PHE ALA ILE VAL SER GLY SEQRES 14 A 279 ASP GLN CYS MET GLU VAL LEU CYS ARG MET PHE ASP PRO SEQRES 15 A 279 GLU LYS VAL VAL PHE VAL SER ASP ILE ASP GLY LEU TYR SEQRES 16 A 279 THR ALA ASP PRO LYS THR ASP LYS LYS ALA ARG LEU ILE SEQRES 17 A 279 GLY GLU VAL THR ARG LYS LYS LEU ASP GLU ALA LEU THR SEQRES 18 A 279 ASP ILE THR VAL ALA ASP VAL THR GLY GLY VAL HIS SER SEQRES 19 A 279 LYS MET GLU ALA MET LEU ARG MET THR ASP ARG ASN ARG SEQRES 20 A 279 ARG CYS TYR LEU VAL ASN GLY ASN ALA PRO ASN ARG LEU SEQRES 21 A 279 TYR SER LEU LEU LYS GLY GLU THR VAL THR CYS THR VAL SEQRES 22 A 279 ALA LYS GLY GLY MET GLU SEQRES 1 B 279 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 279 LEU VAL PRO ARG GLY SER HIS MET ILE LEU ILE LYS LEU SEQRES 3 B 279 GLY GLY SER VAL ILE THR ASP LYS SER GLU TYR HIS LYS SEQRES 4 B 279 PHE ASN LYS GLU THR VAL SER ARG LEU ALA ASP GLU ILE SEQRES 5 B 279 ARG ARG SER GLY GLN ASP VAL MET VAL VAL HIS GLY ALA SEQRES 6 B 279 GLY SER PHE GLY HIS VAL ILE ALA LYS LYS TYR ALA ILE SEQRES 7 B 279 GLN ASP GLY HIS VAL ASP ASP GLY GLN ILE PRO ALA ALA SEQRES 8 B 279 ALA ARG ALA MET CYS ASP THR ARG GLU LEU SER SER MET SEQRES 9 B 279 VAL VAL GLU GLU LEU LEU ALA GLN GLY ILE PRO ALA VAL SEQRES 10 B 279 SER VAL ALA PRO GLY SER CYS PHE VAL MET GLU ASP GLY SEQRES 11 B 279 LYS LEU ILE VAL ASP ASN GLU GLU PRO ILE ARG ARG LEU SEQRES 12 B 279 ALA ASP LEU GLY ILE MET PRO VAL MET PHE GLY ASP VAL SEQRES 13 B 279 VAL PRO ASP ARG LYS LYS GLY PHE ALA ILE VAL SER GLY SEQRES 14 B 279 ASP GLN CYS MET GLU VAL LEU CYS ARG MET PHE ASP PRO SEQRES 15 B 279 GLU LYS VAL VAL PHE VAL SER ASP ILE ASP GLY LEU TYR SEQRES 16 B 279 THR ALA ASP PRO LYS THR ASP LYS LYS ALA ARG LEU ILE SEQRES 17 B 279 GLY GLU VAL THR ARG LYS LYS LEU ASP GLU ALA LEU THR SEQRES 18 B 279 ASP ILE THR VAL ALA ASP VAL THR GLY GLY VAL HIS SER SEQRES 19 B 279 LYS MET GLU ALA MET LEU ARG MET THR ASP ARG ASN ARG SEQRES 20 B 279 ARG CYS TYR LEU VAL ASN GLY ASN ALA PRO ASN ARG LEU SEQRES 21 B 279 TYR SER LEU LEU LYS GLY GLU THR VAL THR CYS THR VAL SEQRES 22 B 279 ALA LYS GLY GLY MET GLU HET ADP A 301 27 HET 0XI A 302 15 HET ADP B 301 27 HET 0XI B 302 15 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM 0XI (2E)-3-PHENYLBUT-2-EN-1-YL DIHYDROGEN PHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 0XI 2(C10 H13 O4 P) FORMUL 7 HOH *303(H2 O) HELIX 1 AA1 GLY A 7 THR A 12 1 6 HELIX 2 AA2 ASN A 21 GLY A 36 1 16 HELIX 3 AA3 ALA A 45 PHE A 48 5 4 HELIX 4 AA4 GLY A 49 ALA A 57 1 9 HELIX 5 AA5 ILE A 58 GLY A 61 5 4 HELIX 6 AA6 GLY A 66 GLN A 92 1 27 HELIX 7 AA7 ALA A 100 PHE A 105 1 6 HELIX 8 AA8 GLU A 117 GLY A 127 1 11 HELIX 9 AA9 SER A 148 ASP A 161 1 14 HELIX 10 AB1 VAL A 191 LEU A 196 1 6 HELIX 11 AB2 GLY A 210 THR A 223 1 14 HELIX 12 AB3 ASN A 238 GLY A 246 1 9 HELIX 13 AB4 GLY B 7 THR B 12 1 6 HELIX 14 AB5 ASN B 21 GLY B 36 1 16 HELIX 15 AB6 ALA B 45 TYR B 56 1 12 HELIX 16 AB7 ALA B 57 GLY B 61 5 5 HELIX 17 AB8 GLY B 66 GLN B 92 1 27 HELIX 18 AB9 ALA B 100 PHE B 105 1 6 HELIX 19 AC1 GLU B 117 GLY B 127 1 11 HELIX 20 AC2 SER B 148 ASP B 161 1 14 HELIX 21 AC3 THR B 192 GLU B 198 1 7 HELIX 22 AC4 GLY B 211 THR B 223 1 13 HELIX 23 AC5 ASN B 238 LYS B 245 1 8 SHEET 1 AA1 7 ALA A 96 SER A 98 0 SHEET 2 AA1 7 MET A 129 PHE A 133 1 O VAL A 131 N VAL A 97 SHEET 3 AA1 7 VAL A 39 HIS A 43 1 N HIS A 43 O MET A 132 SHEET 4 AA1 7 ILE A 2 LEU A 6 1 N ILE A 4 O VAL A 42 SHEET 5 AA1 7 LYS A 164 SER A 169 1 O VAL A 166 N LEU A 3 SHEET 6 AA1 7 ARG A 228 ASN A 233 1 O TYR A 230 N VAL A 165 SHEET 7 AA1 7 THR A 252 VAL A 253 -1 O THR A 252 N LEU A 231 SHEET 1 AA2 2 VAL A 106 GLU A 108 0 SHEET 2 AA2 2 LYS A 111 ILE A 113 -1 O ILE A 113 N VAL A 106 SHEET 1 AA3 2 ASP A 135 ASP A 139 0 SHEET 2 AA3 2 GLY A 143 VAL A 147 -1 O ALA A 145 N VAL A 137 SHEET 1 AA4 7 ALA B 96 SER B 98 0 SHEET 2 AA4 7 MET B 129 PHE B 133 1 O VAL B 131 N VAL B 97 SHEET 3 AA4 7 VAL B 39 HIS B 43 1 N HIS B 43 O MET B 132 SHEET 4 AA4 7 ILE B 2 LEU B 6 1 N ILE B 4 O VAL B 42 SHEET 5 AA4 7 LYS B 164 SER B 169 1 O VAL B 166 N LEU B 3 SHEET 6 AA4 7 ARG B 228 ASN B 233 1 O TYR B 230 N PHE B 167 SHEET 7 AA4 7 THR B 252 ALA B 254 -1 O ALA B 254 N CYS B 229 SHEET 1 AA5 2 VAL B 106 GLU B 108 0 SHEET 2 AA5 2 LYS B 111 ILE B 113 -1 O ILE B 113 N VAL B 106 SHEET 1 AA6 2 ASP B 135 ASP B 139 0 SHEET 2 AA6 2 GLY B 143 VAL B 147 -1 O ALA B 145 N VAL B 137 CRYST1 172.293 172.293 80.958 90.00 90.00 120.00 P 6 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005804 0.003351 0.000000 0.00000 SCALE2 0.000000 0.006702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012352 0.00000